mRNA_P-wetherbeei_contig1874.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1874.2.1
Unique NamemRNA_P-wetherbeei_contig1874.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1874.2.1 vs. uniprot
Match: D7G3W3_ECTSI (HECT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3W3_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 1.930e-12
Identity = 39/79 (49.37%), Postives = 52/79 (65.82%), Query Frame = 3 
Query:  180 HEGEMKVEANVPQAPAMAAAVDRHVAATIVRMLHLLHPVRPHRLLQRLLLNLCQAHPRLRLALVNALVSLADADRERLR 416
            HEGE K+EA++  +      V R     ++R+LHLL P+RPHRLLQR +LNLC  HP +R A+V ALV +  +D  RLR
Sbjct:  780 HEGEWKLEADLKGSDTTPPQVPRETVVMLIRLLHLLTPIRPHRLLQRTVLNLCAGHPLVRRAVVQALVHMIKSDPHRLR 858
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BLAST of mRNA_P-wetherbeei_contig1874.2.1 vs. uniprot
Match: A0A6H5L8R1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8R1_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 1.580e-7
Identity = 30/60 (50.00%), Postives = 39/60 (65.00%), Query Frame = 3 
Query:  180 HEGEMKVEANVPQAPAMAAAVDRHVAATIVRMLHLLHPVRPHRLLQRLLLNLCQAHPRLR 359
            HEGE K+EA+   +      V R     ++R+LHLL P+RPHRLLQR +LNLC  HP +R
Sbjct:  730 HEGEWKLEADPKGSDTTPPQVPRETVVMLIRLLHLLTPIRPHRLLQRTVLNLCAGHPLVR 789
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1874.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G3W3_ECTSI1.930e-1249.37HECT domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5L8R1_9PHAE1.580e-750.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1874contigP-wetherbeei_contig1874:541..1028 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G3W3
Preferred nameUPL1
PFAMsDUF4414,DUF908,DUF913,HECT,UBA
Model size490
Max annot lvl2759|Eukaryota
KEGG koko:K10592
KEGG Pathwayko04120,map04120
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005829,GO:0005911,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009506,GO:0009987,GO:0016020,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0030054,GO:0032446,GO:0032991,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0055044,GO:0061630,GO:0061659,GO:0070647,GO:0071704,GO:0140096,GO:1901564,GO:1902494,GO:1990234
Exons1
Evalue3.16e-13
EggNOG OGsCOG5021@1|root,KOG0939@2759|Eukaryota
EC2.3.2.26
Descriptionubiquitin protein ligase activity
Cds size486
COG categoryO
BRITEko00000,ko00001,ko01000,ko04121
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186154.2268848-UTR-P-wetherbeei_contig1874:540..5421683186154.2268848-UTR-P-wetherbeei_contig1874:540..542Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1874 541..542 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186154.2377079-CDS-P-wetherbeei_contig1874:542..10281683186154.2377079-CDS-P-wetherbeei_contig1874:542..1028Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1874 543..1028 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1874.2.1prot_P-wetherbeei_contig1874.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1874 543..1028 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1874.2.1

>prot_P-wetherbeei_contig1874.2.1 ID=prot_P-wetherbeei_contig1874.2.1|Name=mRNA_P-wetherbeei_contig1874.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=162bp
MFGGIAALAVEANGAAAARAAAAGGVGAASQWRGQPAPTAGAAGATGAAG
DKAAAALTPHEGEMKVEANVPQAPAMAAAVDRHVAATIVRMLHLLHPVRP
HRLLQRLLLNLCQAHPRLRLALVNALVSLADADRERLRDAVMLLPPPPAQ
HGPSAALAAAAV
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mRNA from alignment at P-wetherbeei_contig1874:541..1028+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1874.2.1 ID=mRNA_P-wetherbeei_contig1874.2.1|Name=mRNA_P-wetherbeei_contig1874.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=488bp|location=Sequence derived from alignment at P-wetherbeei_contig1874:541..1028+ (Phaeothamnion wetherbeei SAG_119_79)
ATATGTTTGGCGGGATCGCCGCGCTGGCCGTTGAGGCCAACGGCGCCGCG
GCAGCCCGCGCCGCGGCGGCGGGCGGCGTCGGCGCGGCCTCGCAATGGCG
AGGGCAGCCAGCCCCGACGGCTGGGGCGGCTGGAGCAACGGGGGCCGCCG
GAGACAAGGCCGCCGCGGCATTGACGCCGCACGAGGGCGAGATGAAGGTA
GAGGCGAACGTGCCGCAGGCGCCGGCGATGGCGGCGGCAGTGGACCGGCA
TGTGGCCGCGACCATCGTGCGCATGCTGCACCTGCTGCACCCGGTACGGC
CGCACCGCCTGCTGCAGCGGCTGCTACTCAACCTCTGCCAGGCGCATCCA
CGGTTGCGGCTGGCGCTCGTCAATGCCCTCGTTAGCCTAGCGGACGCCGA
CCGCGAGCGGCTGCGCGACGCCGTCATGCTGCTGCCGCCGCCGCCGGCGC
AGCACGGTCCGTCCGCGGCCCTCGCTGCGGCCGCCGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1874:541..1028+

>mRNA_P-wetherbeei_contig1874.2.1 ID=mRNA_P-wetherbeei_contig1874.2.1|Name=mRNA_P-wetherbeei_contig1874.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=486bp|location=Sequence derived from alignment at P-wetherbeei_contig1874:541..1028+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTTTGGCGGGATCGCCGCGCTGGCCGTTGAGGCCAACGGCGCCGCGGC
AGCCCGCGCCGCGGCGGCGGGCGGCGTCGGCGCGGCCTCGCAATGGCGAG
GGCAGCCAGCCCCGACGGCTGGGGCGGCTGGAGCAACGGGGGCCGCCGGA
GACAAGGCCGCCGCGGCATTGACGCCGCACGAGGGCGAGATGAAGGTAGA
GGCGAACGTGCCGCAGGCGCCGGCGATGGCGGCGGCAGTGGACCGGCATG
TGGCCGCGACCATCGTGCGCATGCTGCACCTGCTGCACCCGGTACGGCCG
CACCGCCTGCTGCAGCGGCTGCTACTCAACCTCTGCCAGGCGCATCCACG
GTTGCGGCTGGCGCTCGTCAATGCCCTCGTTAGCCTAGCGGACGCCGACC
GCGAGCGGCTGCGCGACGCCGTCATGCTGCTGCCGCCGCCGCCGGCGCAG
CACGGTCCGTCCGCGGCCCTCGCTGCGGCCGCCGTG
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