mRNA_P-wetherbeei_contig18739.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18739.1.1
Unique NamemRNA_P-wetherbeei_contig18739.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18739.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18739contigP-wetherbeei_contig18739:316..1065 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1144275.COCOR_01751
Model size684
Max annot lvl2|Bacteria
KEGG koko:K00700,ko:K02404,ko:K02557,ko:K18376,ko:K18682
KEGG TC1.A.30.1,1.C.65.1
KEGG ReactionR02110
KEGG Pathwayko00500,ko01100,ko01110,ko02030,ko02040,ko03018,map00500,map01100,map01110,map02030,map02040,map03018
KEGG ModuleM00565,M00660
Hectar predicted targeting categoryother localisation
Exons2
Evalue9.2e-08
EggNOG OGsCOG1196@1|root,COG3170@1|root,COG1196@2|Bacteria,COG3170@2|Bacteria
EC2.4.1.18
Descriptiontranslation initiation factor activity
Cds size684
COG categoryNU
CAZyCBM48,GH13
BRITEko00000,ko00001,ko00002,ko01000,ko02000,ko02035,ko02044,ko03019,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186154.045533-CDS-P-wetherbeei_contig18739:315..5611683186154.045533-CDS-P-wetherbeei_contig18739:315..561Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18739 316..561 -
1683186154.0591533-CDS-P-wetherbeei_contig18739:627..10651683186154.0591533-CDS-P-wetherbeei_contig18739:627..1065Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18739 628..1065 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18739.1.1prot_P-wetherbeei_contig18739.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18739 316..1065 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18739.1.1

>prot_P-wetherbeei_contig18739.1.1 ID=prot_P-wetherbeei_contig18739.1.1|Name=mRNA_P-wetherbeei_contig18739.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=228bp
QRIHELEAAGKTQEAEAEKARLSKLVGYSQADVSNLRDAKDSAASTAGTV
AATAAGVAVIVCTAGTATPLVAVAAMATTGGALAKVATSGAIEGSGYSAD
DARHDAVTGAIDGGTAVIGMGGGAVAGKAVVAGSEVAAETAARKLLTAGD
MLEKKTANVMLEKTIEGAKIGFKGGAAGGGLSAAVDENTWKDGIGEGFER
IGASTLTGGATGFVAGGVLSGALSGLGA
back to top

mRNA from alignment at P-wetherbeei_contig18739:316..1065-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18739.1.1 ID=mRNA_P-wetherbeei_contig18739.1.1|Name=mRNA_P-wetherbeei_contig18739.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=750bp|location=Sequence derived from alignment at P-wetherbeei_contig18739:316..1065- (Phaeothamnion wetherbeei SAG_119_79)
CAGCGCATCCACGAGCTCGAGGCGGCGGGGAAGACTCAGGAGGCCGAGGC
CGAGAAGGCCAGGCTGTCCAAGCTGGTCGGCTACAGCCAGGCCGACGTCA
GTAACTTGCGCGATGCCAAGGACAGCGCCGCCAGCACGGCCGGCACGGTG
GCGGCGACGGCTGCGGGCGTGGCCGTCATTGTGTGCACGGCTGGAACGGC
AACTCCGCTTGTGGCGGTAGCGGCGATGGCGACTACGGGTGGAGCGCTGG
CCAAAGTTGCTACTTCGGGCGCCATCGAGGGGAGCGGATACAGCGCCGAC
GACGCACGCCACGACGCCGTAACAGGCGCTATCGACGGGGGCACCGCGGT
CATCGGCATGGGCGGGGGAGCGGTCGCCGGAAAGGCAGTGGTAGCCGGCT
CGGAAGTGGCCGCCGAGACGGCCGCCCGCAAGCTCCTGGTGGAAGCCGGG
GAAATCGGGACCGAACAGGTGCTGGGCAAGGCCGAGCAGCGGCTCGTCAT
CCAGACGGCCGGCGACATGCTCGAAAAGAAGACCGCCAATGTAATGCTCG
AGAAAACCATCGAGGGCGCCAAGATCGGCTTCAAGGGCGGTGCCGCGGGA
GGCGGCCTCTCGGCTGCGGTCGACGAGAACACCTGGAAAGACGGGATCGG
CGAGGGGTTCGAGCGCATCGGGGCCTCGACGCTGACGGGCGGAGCCACGG
GCTTTGTGGCGGGAGGCGTGCTAAGCGGAGCGCTCTCGGGCCTGGGGGCT
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig18739:316..1065-

>mRNA_P-wetherbeei_contig18739.1.1 ID=mRNA_P-wetherbeei_contig18739.1.1|Name=mRNA_P-wetherbeei_contig18739.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=684bp|location=Sequence derived from alignment at P-wetherbeei_contig18739:316..1065- (Phaeothamnion wetherbeei SAG_119_79)
CAGCGCATCCACGAGCTCGAGGCGGCGGGGAAGACTCAGGAGGCCGAGGC
CGAGAAGGCCAGGCTGTCCAAGCTGGTCGGCTACAGCCAGGCCGACGTCA
GTAACTTGCGCGATGCCAAGGACAGCGCCGCCAGCACGGCCGGCACGGTG
GCGGCGACGGCTGCGGGCGTGGCCGTCATTGTGTGCACGGCTGGAACGGC
AACTCCGCTTGTGGCGGTAGCGGCGATGGCGACTACGGGTGGAGCGCTGG
CCAAAGTTGCTACTTCGGGCGCCATCGAGGGGAGCGGATACAGCGCCGAC
GACGCACGCCACGACGCCGTAACAGGCGCTATCGACGGGGGCACCGCGGT
CATCGGCATGGGCGGGGGAGCGGTCGCCGGAAAGGCAGTGGTAGCCGGCT
CGGAAGTGGCCGCCGAGACGGCCGCCCGCAAGCTCCTGACGGCCGGCGAC
ATGCTCGAAAAGAAGACCGCCAATGTAATGCTCGAGAAAACCATCGAGGG
CGCCAAGATCGGCTTCAAGGGCGGTGCCGCGGGAGGCGGCCTCTCGGCTG
CGGTCGACGAGAACACCTGGAAAGACGGGATCGGCGAGGGGTTCGAGCGC
ATCGGGGCCTCGACGCTGACGGGCGGAGCCACGGGCTTTGTGGCGGGAGG
CGTGCTAAGCGGAGCGCTCTCGGGCCTGGGGGCT
back to top