mRNA_P-wetherbeei_contig18734.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18734.1.1
Unique NamemRNA_P-wetherbeei_contig18734.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig18734.1.1 vs. uniprot
Match: A0A7X1P5S5_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7X1P5S5_9PROT)

HSP 1 Score: 183 bits (465), Expect = 6.450e-55
Identity = 79/128 (61.72%), Postives = 99/128 (77.34%), Query Frame = 1
Query:    1 EANGLITVWLHVPPERDEEFNAWYNLEHINQIVALPGFVSGRRYMVEDAKPKYLAWYDADDEKVEPGPHFQEVVAHPTPWSLRVRSFYGDDRERMNFRLMRDVGDKPATDTPWLYIVHTDIPDDIVRQ 384
            +ANGLITV LH  PE ++EFN WYNLEH+ Q+ ALPGFV  RRY    A  +YLAWY+  D+ VE GP+FQ +V++PTPWSLR+R  YG++RERMNFRLM +VG  P  D PW+YIVHTDIP+ IV++
Sbjct:    3 QANGLITVRLHTAPEHEDEFNDWYNLEHVPQLTALPGFVRTRRYYCAAADIRYLAWYETKDDSVEGGPYFQGIVSNPTPWSLRIRKHYGENRERMNFRLMCEVGTAPQPDAPWMYIVHTDIPEHIVKE 130          
BLAST of mRNA_P-wetherbeei_contig18734.1.1 vs. uniprot
Match: A0A3N5WEP4_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A3N5WEP4_9PROT)

HSP 1 Score: 175 bits (444), Expect = 1.020e-51
Identity = 78/126 (61.90%), Postives = 92/126 (73.02%), Query Frame = 1
Query:    1 EANGLITVWLHVPPERDEEFNAWYNLEHINQIVALPGFVSGRRYMVEDAKPKYLAWYDADDEKVEPGPHFQEVVAHPTPWSLRVRSFYGDDRERMNFRLMRDVGDKPATDTPWLYIVHTDIPDDIV 378
            +A GLITV L V PE + EFN WY LEH+ Q+ ALPGFV  RRY  + A  +YLAWY+  DE +E    FQ +VAHPTPWSLR+R  YG +RERMNFRLM +VG  P  D PW+YIVHTDIPDDI+
Sbjct:    4 QAGGLITVRLDVVPEHEAEFNDWYTLEHVPQLTALPGFVRTRRYCCDSADIRYLAWYETADETIEAAKDFQYIVAHPTPWSLRMRKLYGANRERMNFRLMCEVGQVPLPDAPWMYIVHTDIPDDII 129          
BLAST of mRNA_P-wetherbeei_contig18734.1.1 vs. uniprot
Match: A0A7V3BKD5_9BACT (Uncharacterized protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A7V3BKD5_9BACT)

HSP 1 Score: 158 bits (400), Expect = 2.530e-45
Identity = 68/119 (57.14%), Postives = 85/119 (71.43%), Query Frame = 1
Query:   10 GLITVWLHVPPERDEEFNAWYNLEHINQIVALPGFVSGRRYMVEDAKPKYLAWYDADDEKVEPGPHFQEVVAHPTPWSLRVRSFYGDDRERMNFRLMRDVGDKPATDTPWLYIVHTDIP 366
            GL+ VWLHV PE ++EFNAWYN EHI QI  +PGF++GRRYM  +  PKYLA Y+  DE +  G  FQ V+A+PTPWS R+R FY D R R  +RL+  +G  PATD P++YIV  DIP
Sbjct:    8 GLLAVWLHVAPEHEDEFNAWYNTEHIQQITGIPGFINGRRYMALEGVPKYLALYELHDETITAGREFQHVMANPTPWSARMRGFYQDHRIRNTYRLIFTIGQAPATDAPYVYIVRMDIP 126          
BLAST of mRNA_P-wetherbeei_contig18734.1.1 vs. uniprot
Match: A0A5N7RL66_9BURK (Uncharacterized protein n=1 Tax=Alcaligenaceae bacterium SAGV5 TaxID=2558245 RepID=A0A5N7RL66_9BURK)

HSP 1 Score: 139 bits (350), Expect = 9.690e-38
Identity = 62/96 (64.58%), Postives = 71/96 (73.96%), Query Frame = 1
Query:    1 EANGLITVWLHVPPERDEEFNAWYNLEHINQIVALPGFVSGRRYMVEDAKPKYLAWYDADDEKVEPGPHFQEVVAHPTPWSLRVRSFYGDDRERMN 288
            +A GLI VWLHVPP R+EEF+AWY LEHI Q+V L GFVSGRRY  E A PK+LA Y+  DE VE  P FQ VV HPTPWS R+ +F+G DR R N
Sbjct:    2 QATGLIAVWLHVPPHREEEFHAWYELEHIPQVVGLEGFVSGRRYYCEQAFPKFLALYETQDESVEDSPGFQHVVTHPTPWSGRIWTFFGKDRIRQN 97          
BLAST of mRNA_P-wetherbeei_contig18734.1.1 vs. uniprot
Match: UPI00067D3120 (hypothetical protein n=1 Tax=Herbaspirillum autotrophicum TaxID=180195 RepID=UPI00067D3120)

HSP 1 Score: 139 bits (349), Expect = 1.130e-37
Identity = 63/147 (42.86%), Postives = 88/147 (59.86%), Query Frame = 1
Query:    4 ANGLITVWLHVPPERDEEFNAWYNLEHINQIVALPGFVSGRRYMVEDAKPKYLAWYDADDEKVEPGPHFQEVVAHPTPWSLRVRSFYGDDRERMNFRLMRDVGDKPATDTPWLYIVHTDIPDDIVRQRAFAAAGNGAGRSARAAICC 444
            ANG+I VWLHV   R+EEFNAWY +EH+ ++ A+ G  SGRRY      PKYL +Y+  DE+VEPGP FQ +++H TPWS R++ FYG++R R N+R +   G  PAT    L+ +   +   +   R  A A +        A+ C
Sbjct:    5 ANGMIAVWLHVAESREEEFNAWYEMEHVAEVCAIDGVASGRRYFSAARLPKYLVFYETRDEQVEPGPGFQRLLSHQTPWSCRMQEFYGENRVRRNYRRLFAQGAFPATHEGSLFTLTAQVSGSVDTARVTAGAADALNVPGCVAVRC 151          
BLAST of mRNA_P-wetherbeei_contig18734.1.1 vs. uniprot
Match: A0A3G8GKQ5_9BURK (Uncharacterized protein n=4 Tax=Pigmentiphaga TaxID=152267 RepID=A0A3G8GKQ5_9BURK)

HSP 1 Score: 136 bits (342), Expect = 1.580e-36
Identity = 61/103 (59.22%), Postives = 72/103 (69.90%), Query Frame = 1
Query:    1 EANGLITVWLHVPPERDEEFNAWYNLEHINQIVALPGFVSGRRYMVEDAKPKYLAWYDADDEKVEPGPHFQEVVAHPTPWSLRVRSFYGDDRERMNFRLMRDV 309
            +A GLI VWLHVPP R+EEF+AWY LEHI Q+V L GFVSGRRY  +   PK+LA Y+  DE VE  P FQ VV HPTPWS R+ +F+G DR R N   +  V
Sbjct:    2 QATGLIAVWLHVPPHREEEFHAWYELEHIPQVVGLDGFVSGRRYYCDQVFPKFLALYETRDESVEDSPGFQHVVTHPTPWSGRIWTFFGKDRIRQNLVRLASV 104          
BLAST of mRNA_P-wetherbeei_contig18734.1.1 vs. uniprot
Match: A0A1E3ZL92_9BORD (Uncharacterized protein n=2 Tax=Burkholderiales TaxID=80840 RepID=A0A1E3ZL92_9BORD)

HSP 1 Score: 134 bits (337), Expect = 8.870e-36
Identity = 61/96 (63.54%), Postives = 70/96 (72.92%), Query Frame = 1
Query:    1 EANGLITVWLHVPPERDEEFNAWYNLEHINQIVALPGFVSGRRYMVEDAKPKYLAWYDADDEKVEPGPHFQEVVAHPTPWSLRVRSFYGDDRERMN 288
            +A GLI VWLHVPP R+EEF+AWY LEHI Q+V L GFVSGRRY    A PK+LA Y+  DE VE  P FQ VV HPTPWS R+ +F+G DR R N
Sbjct:    2 QATGLIAVWLHVPPHREEEFHAWYELEHIPQVVGLDGFVSGRRYDGGQAFPKFLALYETRDESVEDSPGFQHVVTHPTPWSGRIWTFFGKDRIRQN 97          
BLAST of mRNA_P-wetherbeei_contig18734.1.1 vs. uniprot
Match: UPI001676A161 (antibiotic biosynthesis monooxygenase n=1 Tax=Pigmentiphaga litoralis TaxID=516702 RepID=UPI001676A161)

HSP 1 Score: 130 bits (328), Expect = 3.700e-34
Identity = 59/95 (62.11%), Postives = 69/95 (72.63%), Query Frame = 1
Query:   10 GLITVWLHVPPERDEEFNAWYNLEHINQIVALPGFVSGRRYMVEDAKPKYLAWYDADDEKVEPGPHFQEVVAHPTPWSLRVRSFYGDDRERMNFR 294
            G+I VWLHV PER+EEFNAWY  EHI QIV L GFVSG RY  ++A PK+LA Y+  DE VE  P FQ V  HP+PWS R+ SF+G DR R+N R
Sbjct:   31 GMIAVWLHVAPEREEEFNAWYEREHIPQIVDLDGFVSGTRYYSDEAFPKFLALYETVDESVEASPGFQHVTTHPSPWSGRIWSFFGKDRIRLNLR 125          
BLAST of mRNA_P-wetherbeei_contig18734.1.1 vs. uniprot
Match: A0A7Y9LN61_9BURK (Quinol monooxygenase YgiN n=1 Tax=Pigmentiphaga litoralis TaxID=516702 RepID=A0A7Y9LN61_9BURK)

HSP 1 Score: 131 bits (330), Expect = 3.900e-34
Identity = 59/96 (61.46%), Postives = 70/96 (72.92%), Query Frame = 1
Query:    7 NGLITVWLHVPPERDEEFNAWYNLEHINQIVALPGFVSGRRYMVEDAKPKYLAWYDADDEKVEPGPHFQEVVAHPTPWSLRVRSFYGDDRERMNFR 294
            +G+I VWLHV PER+EEFNAWY  EHI QIV L GFVSG RY  ++A PK+LA Y+  DE VE  P FQ V  HP+PWS R+ SF+G DR R+N R
Sbjct:   60 SGMIAVWLHVAPEREEEFNAWYEREHIPQIVDLDGFVSGTRYFSDEAFPKFLALYETVDESVEASPGFQHVTTHPSPWSGRIWSFFGKDRIRLNLR 155          
BLAST of mRNA_P-wetherbeei_contig18734.1.1 vs. uniprot
Match: A0A1W2BNT0_9BURK (Uncharacterized protein n=2 Tax=Polynucleobacter TaxID=44013 RepID=A0A1W2BNT0_9BURK)

HSP 1 Score: 110 bits (274), Expect = 9.210e-27
Identity = 53/71 (74.65%), Postives = 58/71 (81.69%), Query Frame = 2
Query:  380 DNEHLPRLVTVPGVVRARRYAAVEGNPKYLTAYELTDKDAFESPAGLQARKTPWTAKMRSLFFNTRRSMCK 592
            D EHLPRLVTVPGV RARR+     +P+YLTAY L D +AFESP GL ARKTPWTAKMRSLFFNTRR+M K
Sbjct:  110 DEEHLPRLVTVPGVNRARRFICTGQSPRYLTAYSLDDPNAFESPEGLIARKTPWTAKMRSLFFNTRRTMAK 180          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18734.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X1P5S5_9PROT6.450e-5561.72Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A3N5WEP4_9PROT1.020e-5161.90Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A7V3BKD5_9BACT2.530e-4557.14Uncharacterized protein n=1 Tax=bacterium TaxID=18... [more]
A0A5N7RL66_9BURK9.690e-3864.58Uncharacterized protein n=1 Tax=Alcaligenaceae bac... [more]
UPI00067D31201.130e-3742.86hypothetical protein n=1 Tax=Herbaspirillum autotr... [more]
A0A3G8GKQ5_9BURK1.580e-3659.22Uncharacterized protein n=4 Tax=Pigmentiphaga TaxI... [more]
A0A1E3ZL92_9BORD8.870e-3663.54Uncharacterized protein n=2 Tax=Burkholderiales Ta... [more]
UPI001676A1613.700e-3462.11antibiotic biosynthesis monooxygenase n=1 Tax=Pigm... [more]
A0A7Y9LN61_9BURK3.900e-3461.46Quinol monooxygenase YgiN n=1 Tax=Pigmentiphaga li... [more]
A0A1W2BNT0_9BURK9.210e-2774.65Uncharacterized protein n=2 Tax=Polynucleobacter T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18734contigP-wetherbeei_contig18734:250..868 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size619
Hectar predicted targeting categoryother localisation
Exons1
Cds size360
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186153.9682813-UTR-P-wetherbeei_contig18734:249..3811683186153.9682813-UTR-P-wetherbeei_contig18734:249..381Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig18734 250..381 +
1683186153.9881973-UTR-P-wetherbeei_contig18734:741..8681683186153.9881973-UTR-P-wetherbeei_contig18734:741..868Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig18734 742..868 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186153.9790666-CDS-P-wetherbeei_contig18734:381..7411683186153.9790666-CDS-P-wetherbeei_contig18734:381..741Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18734 382..741 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18734.1.1prot_P-wetherbeei_contig18734.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18734 382..741 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18734.1.1

>prot_P-wetherbeei_contig18734.1.1 ID=prot_P-wetherbeei_contig18734.1.1|Name=mRNA_P-wetherbeei_contig18734.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=120bp
MVEDAKPKYLAWYDADDEKVEPGPHFQEVVAHPTPWSLRVRSFYGDDRER
MNFRLMRDVGDKPATDTPWLYIVHTDIPDDIVRQRAFAAAGNGAGRSARA
AICCRRRQSQIPDRVRTDR*
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mRNA from alignment at P-wetherbeei_contig18734:250..868+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18734.1.1 ID=mRNA_P-wetherbeei_contig18734.1.1|Name=mRNA_P-wetherbeei_contig18734.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=619bp|location=Sequence derived from alignment at P-wetherbeei_contig18734:250..868+ (Phaeothamnion wetherbeei SAG_119_79)
GAAGCTAACGGTCTTATCACGGTGTGGCTGCACGTCCCGCCGGAACGCGA CGAAGAATTCAACGCCTGGTACAACCTCGAGCACATCAACCAGATAGTGG CGCTGCCGGGCTTCGTCAGCGGCCGCCGCTACATGGTGGAGGACGCCAAA CCCAAGTACCTCGCGTGGTACGACGCCGACGACGAGAAAGTCGAGCCCGG CCCGCATTTTCAGGAAGTCGTTGCCCATCCGACGCCGTGGTCGCTGCGCG TGCGCAGTTTTTACGGCGACGACCGCGAGCGCATGAATTTCCGCCTGATG CGCGACGTCGGCGACAAGCCCGCGACAGACACGCCGTGGCTTTACATTGT ACATACCGACATTCCCGACGATATTGTACGACAACGAGCATTTGCCGCGG CTGGTAACGGTGCCGGGCGTAGTGCGCGCGCGGCGATATGCTGCCGTCGA AGGCAATCCCAAATACCTGACCGCGTACGAACTGACCGATAAAGACGCAT TCGAAAGCCCCGCAGGCCTGCAGGCGCGCAAAACGCCGTGGACCGCCAAG ATGCGCTCGCTGTTCTTCAACACGCGGCGCAGCATGTGCAAGCTGGTGCT GCCGAGCGTGCGGCATCAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18734:250..868+

>mRNA_P-wetherbeei_contig18734.1.1 ID=mRNA_P-wetherbeei_contig18734.1.1|Name=mRNA_P-wetherbeei_contig18734.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=360bp|location=Sequence derived from alignment at P-wetherbeei_contig18734:250..868+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGGAGGACGCCAAACCCAAGTACCTCGCGTGGTACGACGCCGACGA
CGAGAAAGTCGAGCCCGGCCCGCATTTTCAGGAAGTCGTTGCCCATCCGA
CGCCGTGGTCGCTGCGCGTGCGCAGTTTTTACGGCGACGACCGCGAGCGC
ATGAATTTCCGCCTGATGCGCGACGTCGGCGACAAGCCCGCGACAGACAC
GCCGTGGCTTTACATTGTACATACCGACATTCCCGACGATATTGTACGAC
AACGAGCATTTGCCGCGGCTGGTAACGGTGCCGGGCGTAGTGCGCGCGCG
GCGATATGCTGCCGTCGAAGGCAATCCCAAATACCTGACCGCGTACGAAC
TGACCGATAA
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