mRNA_P-wetherbeei_contig18703.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18703.1.1
Unique NamemRNA_P-wetherbeei_contig18703.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig18703.1.1 vs. uniprot
Match: A0A7Z9PP08_9BACT (Uncharacterized protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7Z9PP08_9BACT)

HSP 1 Score: 50.4 bits (119), Expect = 6.020e-5
Identity = 36/100 (36.00%), Postives = 53/100 (53.00%), Query Frame = 1 
Query:   10 SEALFLRAVALQEKSPVD-PEQSMESLRELADRYRVNKQFSEAESTARKA-LALAESTMGAQDPGLIPYLKLMAEVLKTAGRYGESTDFESRAVLLRFKK 303
            +E  F RA+ L     VD  E+  + L  LA   + N+  +E+   A  A L + E   G +   L+P LKL AE+      YG ST+FE +A+LL+FK+
Sbjct:  449 AEQAFRRALQLHRNCGVDNKEREYKILLGLAQVLKKNRVLTESLKLAETAQLIMQELHDGRETKALVPVLKLQAEIHDLLNDYGRSTEFEQKAMLLKFKR 548
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18703.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7Z9PP08_9BACT6.020e-536.00Uncharacterized protein n=1 Tax=Phycisphaerales ba... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18703contigP-wetherbeei_contig18703:68..379 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size312
Hectar predicted targeting categoryother localisation
Exons1
Cds size312
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186153.4755042-CDS-P-wetherbeei_contig18703:67..3791683186153.4755042-CDS-P-wetherbeei_contig18703:67..379Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18703 68..379 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18703.1.1prot_P-wetherbeei_contig18703.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18703 68..379 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18703.1.1

>prot_P-wetherbeei_contig18703.1.1 ID=prot_P-wetherbeei_contig18703.1.1|Name=mRNA_P-wetherbeei_contig18703.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=104bp
MTGSEALFLRAVALQEKSPVDPEQSMESLRELADRYRVNKQFSEAESTAR
KALALAESTMGAQDPGLIPYLKLMAEVLKTAGRYGESTDFESRAVLLRFK
KKV*
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mRNA from alignment at P-wetherbeei_contig18703:68..379+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18703.1.1 ID=mRNA_P-wetherbeei_contig18703.1.1|Name=mRNA_P-wetherbeei_contig18703.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=312bp|location=Sequence derived from alignment at P-wetherbeei_contig18703:68..379+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACCGGCAGCGAAGCGCTCTTCCTGCGGGCCGTCGCGCTCCAGGAAAA
AAGCCCCGTCGATCCCGAGCAGTCGATGGAATCACTGCGCGAGCTTGCCG
ACCGTTACCGCGTCAACAAGCAGTTTAGCGAAGCGGAGAGCACGGCCCGC
AAAGCGCTGGCTCTGGCAGAATCTACGATGGGCGCGCAAGACCCGGGCTT
GATCCCCTATCTCAAACTGATGGCCGAGGTCCTTAAAACGGCTGGCCGCT
ATGGTGAGAGCACCGACTTCGAGAGCCGCGCGGTTCTACTGCGTTTCAAA
AAGAAAGTCTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18703:68..379+

>mRNA_P-wetherbeei_contig18703.1.1 ID=mRNA_P-wetherbeei_contig18703.1.1|Name=mRNA_P-wetherbeei_contig18703.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=312bp|location=Sequence derived from alignment at P-wetherbeei_contig18703:68..379+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACCGGCAGCGAAGCGCTCTTCCTGCGGGCCGTCGCGCTCCAGGAAAA
AAGCCCCGTCGATCCCGAGCAGTCGATGGAATCACTGCGCGAGCTTGCCG
ACCGTTACCGCGTCAACAAGCAGTTTAGCGAAGCGGAGAGCACGGCCCGC
AAAGCGCTGGCTCTGGCAGAATCTACGATGGGCGCGCAAGACCCGGGCTT
GATCCCCTATCTCAAACTGATGGCCGAGGTCCTTAAAACGGCTGGCCGCT
ATGGTGAGAGCACCGACTTCGAGAGCCGCGCGGTTCTACTGCGTTTCAAA
AAGAAAGTCTAG
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