mRNA_P-wetherbeei_contig18701.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18701.1.1
Unique NamemRNA_P-wetherbeei_contig18701.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig18701.1.1 vs. uniprot
Match: D7FN01_ECTSI (Hpt domain protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN01_ECTSI)

HSP 1 Score: 49.3 bits (116), Expect = 5.680e-6
Identity = 20/36 (55.56%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:    7 VVDWDLALEQCSGDETFLYELLGDLWSEASENLDQL 114
            V+DW  A++QCSGD +FL ELL DLW+E++ +++QL
Sbjct:   37 VIDWAAAVDQCSGDVSFLEELLVDLWNESNAHMEQL 72
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18701.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FN01_ECTSI5.680e-655.56Hpt domain protein n=2 Tax=Ectocarpus TaxID=2879 R... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18701contigP-wetherbeei_contig18701:116..241 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FN01
PFAMsHpt
Model size126
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue9.32e-07
EggNOG OGs2EUJB@1|root,2SWQ8@2759|Eukaryota
Cds size126
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186153.4073558-CDS-P-wetherbeei_contig18701:115..2411683186153.4073558-CDS-P-wetherbeei_contig18701:115..241Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18701 116..241 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18701.1.1prot_P-wetherbeei_contig18701.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18701 116..241 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18701.1.1

>prot_P-wetherbeei_contig18701.1.1 ID=prot_P-wetherbeei_contig18701.1.1|Name=mRNA_P-wetherbeei_contig18701.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=42bp
MPVVDWDLALEQCSGDETFLYELLGDLWSEASENLDQLNVHV
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mRNA from alignment at P-wetherbeei_contig18701:116..241-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18701.1.1 ID=mRNA_P-wetherbeei_contig18701.1.1|Name=mRNA_P-wetherbeei_contig18701.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=126bp|location=Sequence derived from alignment at P-wetherbeei_contig18701:116..241- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGGTGGTGGACTGGGACCTGGCGCTGGAGCAGTGCTCGGGGGACGA
GACGTTCCTGTACGAGCTGCTGGGGGACCTGTGGTCAGAGGCCAGCGAAA
ACCTTGATCAGCTTAATGTACACGTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18701:116..241-

>mRNA_P-wetherbeei_contig18701.1.1 ID=mRNA_P-wetherbeei_contig18701.1.1|Name=mRNA_P-wetherbeei_contig18701.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=126bp|location=Sequence derived from alignment at P-wetherbeei_contig18701:116..241- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGGTGGTGGACTGGGACCTGGCGCTGGAGCAGTGCTCGGGGGACGA
GACGTTCCTGTACGAGCTGCTGGGGGACCTGTGGTCAGAGGCCAGCGAAA
ACCTTGATCAGCTTAATGTACACGTC
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