mRNA_P-wetherbeei_contig1870.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1870.1.1
Unique NamemRNA_P-wetherbeei_contig1870.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1870.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1870contigP-wetherbeei_contig1870:237..3050 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size2419
Hectar predicted targeting categoryother localisation
Exons2
Cds size2403
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186153.2543774-UTR-P-wetherbeei_contig1870:236..2521683186153.2543774-UTR-P-wetherbeei_contig1870:236..252Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1870 237..252 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186153.2701898-CDS-P-wetherbeei_contig1870:252..25971683186153.2701898-CDS-P-wetherbeei_contig1870:252..2597Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1870 253..2597 +
1683186153.2779708-CDS-P-wetherbeei_contig1870:2992..30501683186153.2779708-CDS-P-wetherbeei_contig1870:2992..3050Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1870 2993..3050 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1870.1.1prot_P-wetherbeei_contig1870.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1870 253..3050 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1870.1.1

>prot_P-wetherbeei_contig1870.1.1 ID=prot_P-wetherbeei_contig1870.1.1|Name=mRNA_P-wetherbeei_contig1870.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=801bp
MGWVLGGEFASSGPVRARSSSPNPRRPTRPAGGAGWILGGTPQPFPRPAA
AAVAPPPARRTSVSLSPSRPTTGRKDGASPPHIAKGSIFSGLGSRAREEI
AAKRATELENAIAAAAAAVMAMTAEQDDGATGARRKSAIGTAETALAEEL
GLDGATSGNADEHPLKVWPNSNGSSFHSDRSDKGRLDDDRDSSGVEADTD
VNDAEADADADPDAGSGEAHSRDASFDSEPPIKGNSSRGTDTAAPSPRDA
LAGGPAAAAAAAAAALLQEAKEKGVNVAAVEHGLRAQLLVPPFRSSVLQH
EEGTTKNDAEGDDDGGCDGSGNYGNHDGNDDDESGGSGGNDGSGGSGSDG
DVGGDGSSDGGDAEEEGDVTESTEKTETAPAAGEELLPAEEEAQAVDVRD
CEPEAPPYQGEESPQFPSQHTPPSPRRQPSMKQQDEQRKNATEPPAVPPE
PPSEKAGDALAGANVAATESAAAGPAADADAVSTAIAAEAVIVETRSPPV
PERPPRLQTVTTAPSAAARPAASSVSSPDLPRQSLQASAKGSKEAKKAAP
AAVPAPAVAAAAPVIQRNSSGDGGGGAAGTVFAPGGRGPHFGRDGAGPSG
ASSAKPYWLQPPGGGTGDDEAEPSSARRGASVSSPRSDASDSTGGSGGGG
SGGTALAQRVSDTERRTIVAHLVQAKHHRRRTSESAAATAATLAGSNPCE
TDNGFFQPGFPESQRPPPPPPPPPPPPRPASRTGQLASPAAAAAVERDSE
PGTGPAVYERNLAWRARADSQAEAERQALEQRTMSECTFAPEILPCPPSM
G
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mRNA from alignment at P-wetherbeei_contig1870:237..3050+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1870.1.1 ID=mRNA_P-wetherbeei_contig1870.1.1|Name=mRNA_P-wetherbeei_contig1870.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2814bp|location=Sequence derived from alignment at P-wetherbeei_contig1870:237..3050+ (Phaeothamnion wetherbeei SAG_119_79)
GGAAAGGAAGAAAGGCATGGGGTGGGTCCTGGGTGGCGAATTCGCCAGCA
GTGGACCTGTCCGGGCTCGCAGCTCGAGTCCAAACCCGCGGAGACCGACA
AGACCCGCTGGAGGAGCAGGATGGATTCTTGGCGGCACTCCTCAGCCTTT
TCCCCGTCCCGCCGCAGCCGCTGTTGCACCCCCGCCGGCGCGCAGGACGT
CGGTGTCGCTGTCGCCCTCGAGGCCGACGACGGGAAGAAAGGACGGCGCT
TCTCCGCCACACATTGCTAAGGGGAGCATTTTCAGCGGCCTCGGGAGTCG
GGCGCGTGAAGAAATCGCAGCAAAGAGAGCGACAGAGCTGGAGAACGCTA
TCGCTGCAGCGGCGGCAGCTGTCATGGCGATGACCGCGGAACAGGACGAC
GGCGCGACCGGTGCCAGAAGGAAGTCGGCCATCGGGACAGCAGAAACGGC
ACTCGCAGAGGAGCTGGGGCTAGATGGTGCCACGAGCGGCAACGCCGACG
AACACCCGTTGAAGGTGTGGCCCAACTCGAACGGCAGTAGTTTCCACAGC
GACCGCTCCGACAAGGGACGTCTCGACGACGACCGCGACAGCTCCGGCGT
GGAAGCCGACACGGACGTCAACGACGCCGAGGCCGACGCCGATGCGGACC
CCGACGCCGGCAGCGGAGAAGCCCACAGCAGGGACGCGTCTTTCGACAGC
GAGCCCCCAATCAAGGGCAACAGCAGCAGAGGGACCGACACCGCGGCGCC
GTCACCACGCGACGCACTTGCGGGCGGCCCCGCGGCGGCGGCAGCGGCGG
CGGCGGCGGCGCTGTTGCAAGAAGCAAAAGAAAAGGGCGTCAACGTTGCG
GCGGTGGAGCACGGCCTGCGGGCGCAGCTTTTGGTGCCGCCGTTCCGGTC
TTCGGTTTTGCAGCACGAGGAAGGAACCACCAAAAACGACGCTGAAGGCG
ACGACGACGGCGGCTGCGACGGCAGCGGCAACTACGGCAATCATGATGGC
AACGACGACGACGAAAGCGGTGGCAGCGGCGGCAACGACGGCAGTGGCGG
TAGCGGCAGCGACGGCGATGTCGGTGGCGATGGCAGCAGCGACGGCGGTG
ACGCCGAAGAAGAAGGTGACGTGACAGAGTCCACCGAAAAGACCGAGACC
GCGCCGGCGGCAGGAGAAGAGCTCCTGCCGGCAGAGGAAGAGGCCCAGGC
GGTAGATGTCAGGGACTGCGAGCCCGAGGCGCCTCCGTACCAAGGAGAGG
AATCGCCGCAATTTCCTTCGCAACACACACCACCGTCGCCGCGGCGGCAG
CCCTCGATGAAGCAGCAAGACGAGCAGCGCAAAAATGCGACGGAACCGCC
AGCAGTGCCGCCCGAGCCCCCCTCAGAAAAGGCGGGAGACGCTCTTGCAG
GCGCGAATGTCGCCGCTACCGAAAGCGCTGCCGCCGGCCCCGCCGCCGAC
GCCGACGCCGTCTCTACCGCCATCGCAGCCGAAGCCGTTATCGTGGAAAC
ACGCAGCCCGCCCGTGCCCGAAAGGCCGCCGCGGCTGCAGACGGTGACGA
CGGCACCGTCAGCCGCCGCACGTCCCGCCGCGTCCAGCGTCAGCTCGCCT
GACCTGCCGCGTCAGTCTCTGCAAGCCAGTGCAAAGGGCAGCAAGGAAGC
AAAGAAGGCGGCGCCTGCAGCGGTGCCGGCGCCAGCGGTGGCGGCGGCGG
CGCCGGTGATTCAGCGCAACAGCAGCGGCGATGGTGGTGGTGGTGCGGCT
GGTACTGTCTTCGCTCCTGGTGGCAGGGGGCCGCACTTTGGGCGCGACGG
CGCTGGCCCCAGCGGCGCGTCCTCGGCCAAGCCTTACTGGCTCCAGCCGC
CAGGAGGCGGCACAGGCGACGACGAGGCCGAACCCAGCAGCGCACGCAGG
GGTGCAAGCGTCTCGTCTCCTAGAAGCGATGCTAGCGACAGCACTGGTGG
CAGTGGAGGCGGCGGCAGCGGTGGTACTGCTCTGGCGCAGCGTGTCTCAG
ACACCGAGCGCCGCACCATCGTCGCCCACCTTGTACAAGCAAAGCACCAC
CGCCGTCGCACTTCGGAATCGGCCGCGGCCACCGCCGCCACCCTCGCGGG
AAGCAATCCCTGCGAGACGGACAACGGCTTTTTCCAGCCGGGATTTCCGG
AATCGCAGCGGCCGCCCCCGCCGCCGCCGCCACCCCCACCGCCACCGCGG
CCGGCGTCAAGAACGGGACAGCTGGCATCCCCGGCGGCGGCGGCGGCCGT
GGAGAGGGACAGCGAACCGGGGACGGGGCCGGCAGTCTACGAAAGGAACC
TGGCGTGGCGCGCGCGGGCAGACTCGCAGGCGGAGGCGGAAAGGCAGGCG
CTGGAGCAGAGGTGAGGACGACGGCCGGCCGCAGATGCCGAGGCGGCCGG
CGCCCGTCTCTTGCTTTTGGGGAAGGTGGGGGAGGGAAGAGCGCGGTTTC
TGCGTAGTTTCATCGGGTCACCGTCTGGCCGGCCTGACTGACTTGGTGGC
GGGAAACGGGAATGTAAGGCATGGCTGCGCCCGCCGTGTAATTTGTCCGA
ACGGCGCTTTGGCTGTCAGAAGATGAATTGGGAAAGGCGCCGCGATGGAT
ACAAGGCAGCGCTGACAGCTTTACTTGAGCCGGTGCCGTTTGCCGGGTCT
TGAGGCTGCAAAAAAGAGACACGTTACAAGCTCTAATACATTTTTTTCAA
CCACCGACCACAAATCTTTTGTTCTGTGCCGATTTTGCTTGCTGCGCCGC
CGGCAGAACGATGAGCGAGTGTACATTTGCACCAGAGATCCTGCCTTGCC
CACCCTCGATGGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1870:237..3050+

>mRNA_P-wetherbeei_contig1870.1.1 ID=mRNA_P-wetherbeei_contig1870.1.1|Name=mRNA_P-wetherbeei_contig1870.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2403bp|location=Sequence derived from alignment at P-wetherbeei_contig1870:237..3050+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGGTGGGTCCTGGGTGGCGAATTCGCCAGCAGTGGACCTGTCCGGGC
TCGCAGCTCGAGTCCAAACCCGCGGAGACCGACAAGACCCGCTGGAGGAG
CAGGATGGATTCTTGGCGGCACTCCTCAGCCTTTTCCCCGTCCCGCCGCA
GCCGCTGTTGCACCCCCGCCGGCGCGCAGGACGTCGGTGTCGCTGTCGCC
CTCGAGGCCGACGACGGGAAGAAAGGACGGCGCTTCTCCGCCACACATTG
CTAAGGGGAGCATTTTCAGCGGCCTCGGGAGTCGGGCGCGTGAAGAAATC
GCAGCAAAGAGAGCGACAGAGCTGGAGAACGCTATCGCTGCAGCGGCGGC
AGCTGTCATGGCGATGACCGCGGAACAGGACGACGGCGCGACCGGTGCCA
GAAGGAAGTCGGCCATCGGGACAGCAGAAACGGCACTCGCAGAGGAGCTG
GGGCTAGATGGTGCCACGAGCGGCAACGCCGACGAACACCCGTTGAAGGT
GTGGCCCAACTCGAACGGCAGTAGTTTCCACAGCGACCGCTCCGACAAGG
GACGTCTCGACGACGACCGCGACAGCTCCGGCGTGGAAGCCGACACGGAC
GTCAACGACGCCGAGGCCGACGCCGATGCGGACCCCGACGCCGGCAGCGG
AGAAGCCCACAGCAGGGACGCGTCTTTCGACAGCGAGCCCCCAATCAAGG
GCAACAGCAGCAGAGGGACCGACACCGCGGCGCCGTCACCACGCGACGCA
CTTGCGGGCGGCCCCGCGGCGGCGGCAGCGGCGGCGGCGGCGGCGCTGTT
GCAAGAAGCAAAAGAAAAGGGCGTCAACGTTGCGGCGGTGGAGCACGGCC
TGCGGGCGCAGCTTTTGGTGCCGCCGTTCCGGTCTTCGGTTTTGCAGCAC
GAGGAAGGAACCACCAAAAACGACGCTGAAGGCGACGACGACGGCGGCTG
CGACGGCAGCGGCAACTACGGCAATCATGATGGCAACGACGACGACGAAA
GCGGTGGCAGCGGCGGCAACGACGGCAGTGGCGGTAGCGGCAGCGACGGC
GATGTCGGTGGCGATGGCAGCAGCGACGGCGGTGACGCCGAAGAAGAAGG
TGACGTGACAGAGTCCACCGAAAAGACCGAGACCGCGCCGGCGGCAGGAG
AAGAGCTCCTGCCGGCAGAGGAAGAGGCCCAGGCGGTAGATGTCAGGGAC
TGCGAGCCCGAGGCGCCTCCGTACCAAGGAGAGGAATCGCCGCAATTTCC
TTCGCAACACACACCACCGTCGCCGCGGCGGCAGCCCTCGATGAAGCAGC
AAGACGAGCAGCGCAAAAATGCGACGGAACCGCCAGCAGTGCCGCCCGAG
CCCCCCTCAGAAAAGGCGGGAGACGCTCTTGCAGGCGCGAATGTCGCCGC
TACCGAAAGCGCTGCCGCCGGCCCCGCCGCCGACGCCGACGCCGTCTCTA
CCGCCATCGCAGCCGAAGCCGTTATCGTGGAAACACGCAGCCCGCCCGTG
CCCGAAAGGCCGCCGCGGCTGCAGACGGTGACGACGGCACCGTCAGCCGC
CGCACGTCCCGCCGCGTCCAGCGTCAGCTCGCCTGACCTGCCGCGTCAGT
CTCTGCAAGCCAGTGCAAAGGGCAGCAAGGAAGCAAAGAAGGCGGCGCCT
GCAGCGGTGCCGGCGCCAGCGGTGGCGGCGGCGGCGCCGGTGATTCAGCG
CAACAGCAGCGGCGATGGTGGTGGTGGTGCGGCTGGTACTGTCTTCGCTC
CTGGTGGCAGGGGGCCGCACTTTGGGCGCGACGGCGCTGGCCCCAGCGGC
GCGTCCTCGGCCAAGCCTTACTGGCTCCAGCCGCCAGGAGGCGGCACAGG
CGACGACGAGGCCGAACCCAGCAGCGCACGCAGGGGTGCAAGCGTCTCGT
CTCCTAGAAGCGATGCTAGCGACAGCACTGGTGGCAGTGGAGGCGGCGGC
AGCGGTGGTACTGCTCTGGCGCAGCGTGTCTCAGACACCGAGCGCCGCAC
CATCGTCGCCCACCTTGTACAAGCAAAGCACCACCGCCGTCGCACTTCGG
AATCGGCCGCGGCCACCGCCGCCACCCTCGCGGGAAGCAATCCCTGCGAG
ACGGACAACGGCTTTTTCCAGCCGGGATTTCCGGAATCGCAGCGGCCGCC
CCCGCCGCCGCCGCCACCCCCACCGCCACCGCGGCCGGCGTCAAGAACGG
GACAGCTGGCATCCCCGGCGGCGGCGGCGGCCGTGGAGAGGGACAGCGAA
CCGGGGACGGGGCCGGCAGTCTACGAAAGGAACCTGGCGTGGCGCGCGCG
GGCAGACTCGCAGGCGGAGGCGGAAAGGCAGGCGCTGGAGCAGAGAACGA
TGAGCGAGTGTACATTTGCACCAGAGATCCTGCCTTGCCCACCCTCGATG
GGG
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