mRNA_P-wetherbeei_contig187.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig187.1.1
Unique NamemRNA_P-wetherbeei_contig187.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig187.1.1 vs. uniprot
Match: D7FI53_ECTSI (SMK-1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI53_ECTSI)

HSP 1 Score: 155 bits (392), Expect = 4.160e-42
Identity = 76/120 (63.33%), Postives = 93/120 (77.50%), Query Frame = 1 
Query:   25 GWRVKVYELNSEGQWDDKGTGHIQCRVVEALGGPALCVSSEADDSRQLVCSRVIDGDVYQRQGDNIITWSD--PGAGSADAG--------GADLALSFQENDGCLDIWGRICDVQGRFSS 354
            GWRVK+Y+LN EGQWDD+GTGHI CR VE+LGG AL V +E +D R+L+ S+V+D DVYQRQGDNIITW +  P  G+A++G        G DLALSFQEN GCL+IW +ICDVQGRF +
Sbjct:    5 GWRVKLYQLNDEGQWDDRGTGHISCRAVESLGGTALVVLAE-EDGRELMQSKVVDEDVYQRQGDNIITWCEAPPLIGAANSGVAAARGAAGVDLALSFQENVGCLEIWDQICDVQGRFGN 123
[Close]
BLAST of mRNA_P-wetherbeei_contig187.1.1 vs. uniprot
Match: A0A6H5KKJ6_9PHAE (SMK-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKJ6_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 3.860e-41
Identity = 76/120 (63.33%), Postives = 92/120 (76.67%), Query Frame = 1 
Query:   25 GWRVKVYELNSEGQWDDKGTGHIQCRVVEALGGPALCVSSEADDSRQLVCSRVIDGDVYQRQGDNIITWSD--PGAGSADAG--------GADLALSFQENDGCLDIWGRICDVQGRFSS 354
            GWRVK+Y+LN EGQWDD+GTGHI CR VE+LGG AL V +E +D R+L+ S+V+D DVYQRQGDNIITW +  P  G+A+ G        G DLALSFQEN GCL+IW +ICDVQGRF +
Sbjct:   92 GWRVKLYQLNDEGQWDDRGTGHISCRAVESLGGTALVVLAE-EDGRELMQSKVVDEDVYQRQGDNIITWCEAPPLIGAANNGVAAARGAAGVDLALSFQENVGCLEIWDQICDVQGRFGN 210
[Close]
BLAST of mRNA_P-wetherbeei_contig187.1.1 vs. uniprot
Match: A0A7S3YI92_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YI92_HETAK)

HSP 1 Score: 145 bits (366), Expect = 1.650e-39
Identity = 64/111 (57.66%), Postives = 86/111 (77.48%), Query Frame = 1 
Query:   19 KQGWRVKVYELNSEGQWDDKGTGHIQCRVVEALGGPALCVSSEADDSRQLVCSRVIDGDVYQRQGDNIITWSDPGAGSADAGGADLALSFQENDGCLDIWGRICDVQGRFS 351
            +QGWRVK+Y+LN +GQWDD+GTGHI C  VE LG   + ++ E  + ++L+ S++ID DVYQRQGDNIITW++P     +  G DLALSFQEN GCL+IW ++CDVQG++S
Sbjct:    5 QQGWRVKLYQLNDQGQWDDRGTGHISCTFVEELGNALVILNEE--NQQELLKSKIIDEDVYQRQGDNIITWTEP---EENGSGVDLALSFQENAGCLEIWNKVCDVQGKYS 110
[Close]
BLAST of mRNA_P-wetherbeei_contig187.1.1 vs. uniprot
Match: A0A4D9DCZ9_9STRA (SMK-1 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DCZ9_9STRA)

HSP 1 Score: 121 bits (304), Expect = 1.120e-29
Identity = 61/118 (51.69%), Postives = 77/118 (65.25%), Query Frame = 1 
Query:    1 GGPAPPKQGWRVKVYELNSEGQWDDKGTGHIQCRVVEALGGPALCVSSEADDSRQLVCSRVIDGDVYQRQGDNIITWSDPGAGSADAGGADLALSFQENDGCLDIWGRICDVQGRFSS 354
            GG    ++GWR K+Y+L+ EGQWDDKGTG +  +  E LGG A   S E DD   L+  R+   D+YQRQGDNIITW++PGA   D    D+ALSFQ+  GC  IW R+  VQGR+ S
Sbjct:  103 GGKGEAQEGWRFKLYQLDVEGQWDDKGTGFLTIKNDERLGGTAFQASKE-DDGSVLLNLRIQPEDIYQRQGDNIITWTEPGAHGKDP--YDMALSFQDEQGCRHIWERLVSVQGRYHS 217
[Close]
BLAST of mRNA_P-wetherbeei_contig187.1.1 vs. uniprot
Match: A0A836CM72_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM72_9STRA)

HSP 1 Score: 115 bits (287), Expect = 1.270e-28
Identity = 67/164 (40.85%), Postives = 82/164 (50.00%), Query Frame = 1 
Query:   25 GWRVKVYELNSEGQWDDKGTGHIQCRVVEALGGPALCVSSEADDSR--QLV----------------------------------------------------CSRVIDGDVYQRQGDNIITWSDPGAGSADAGGADLALSFQENDGCLDIWGRICDVQGRFSS 354
            GWRVK+Y+LNS+GQWD KGTG+I C+ + A+   ALCV SE D  +  QLV                                                     S+V D DVY+RQGDNIITW +P        G DLALSFQEN GC++IW +I DVQGR +S
Sbjct:  139 GWRVKLYQLNSDGQWDAKGTGYISCKYIHAVEATALCVVSEVDGCQLLQLVGARSPGTFSGAFRALAGGAHISASKNDFTLPVPVPGSPPCAAGRGAFSAAFRASKVSDSDVYRRQGDNIITWCEPV-------GLDLALSFQENQGCMEIWSQITDVQGRKNS 295
[Close]
BLAST of mRNA_P-wetherbeei_contig187.1.1 vs. uniprot
Match: A0A7S2D4C1_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D4C1_9STRA)

HSP 1 Score: 116 bits (290), Expect = 8.460e-28
Identity = 58/112 (51.79%), Postives = 77/112 (68.75%), Query Frame = 1 
Query:   22 QGWRVKVYELNSEGQWDDKGTGHIQCRVVEALGGPALCVSSEADDSRQLVCSRVI-DGDVYQRQGDNIITWSDPGAGSADAGGADLALSFQENDGCLDIWGRICDVQGRFSS 354
            +GWRVK+Y+LN +GQWDD+GTG I+    EALG P + V SE + SR LV SR+  D D Y  QG++IITW +        G  DLALSFQEN+GC+ IW +I ++QGR ++
Sbjct:   22 EGWRVKLYQLNDDGQWDDRGTGKIRVDHAEALGTPCVHVVSE-ESSRDLVTSRITEDRDAYSLQGESIITWEERRGAQ---GSLDLALSFQENEGCMQIWHQIQEIQGRLTT 129
[Close]
BLAST of mRNA_P-wetherbeei_contig187.1.1 vs. uniprot
Match: A0A7S2SF67_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SF67_9STRA)

HSP 1 Score: 113 bits (282), Expect = 4.060e-27
Identity = 56/113 (49.56%), Postives = 76/113 (67.26%), Query Frame = 1 
Query:   19 KQGWRVKVYELNSEGQWDDKGTGHIQCRVVEALGGPALCVSSEADDSRQLVCSRVIDG-DVYQRQGDNIITWSDPGAGSADAGGADLALSFQENDGCLDIWGRICDVQGRFSS 354
            +QGWRVK+Y+LN+ GQWDD+GTG I+   V++LGGP + + SE +    L C R+++G D Y  QGDNIITW + GA  A     DLA+SFQE  GC+ +  +I +VQG   S
Sbjct:    9 QQGWRVKLYQLNAHGQWDDRGTGQIRIVHVDSLGGPGINIVSEMNGQEILQC-RIVEGRDAYSLQGDNIITWEERGANGA---AIDLAVSFQEAAGCMHVMNQIQEVQGTLKS 117
[Close]
BLAST of mRNA_P-wetherbeei_contig187.1.1 vs. uniprot
Match: A0A1I8J0G0_9PLAT (SMK-1 domain-containing protein n=1 Tax=Macrostomum lignano TaxID=282301 RepID=A0A1I8J0G0_9PLAT)

HSP 1 Score: 109 bits (272), Expect = 2.290e-25
Identity = 57/105 (54.29%), Postives = 69/105 (65.71%), Query Frame = 1 
Query:   31 RVKVYELNSEGQWDDKGTGHIQCRVVEALGGPALCVSSEADDSRQLVCSRVIDGDVYQRQGDNIITWSDPGAGSADAGGADLALSFQENDGCLDIWGRICDVQGR 345
            RVK+Y LN E QWDDKGTGH+    VE+L G AL V SEAD S  L+ SR+     YQ+Q + +I WS+       A   DLALSFQE DGC +IWG+IC VQG+
Sbjct:   40 RVKLYMLNEERQWDDKGTGHVSSVFVESLNGIALLVVSEADGST-LLESRIQPDTAYQKQQETLIVWSE-------AESMDLALSFQEKDGCDEIWGKICSVQGK 136
[Close]
BLAST of mRNA_P-wetherbeei_contig187.1.1 vs. uniprot
Match: A0A267EGB7_9PLAT (SMK-1 domain-containing protein n=4 Tax=Macrostomum lignano TaxID=282301 RepID=A0A267EGB7_9PLAT)

HSP 1 Score: 109 bits (272), Expect = 2.290e-25
Identity = 57/105 (54.29%), Postives = 69/105 (65.71%), Query Frame = 1 
Query:   31 RVKVYELNSEGQWDDKGTGHIQCRVVEALGGPALCVSSEADDSRQLVCSRVIDGDVYQRQGDNIITWSDPGAGSADAGGADLALSFQENDGCLDIWGRICDVQGR 345
            RVK+Y LN E QWDDKGTGH+    VE+L G AL V SEAD S  L+ SR+     YQ+Q + +I WS+       A   DLALSFQE DGC +IWG+IC VQG+
Sbjct:   11 RVKLYMLNEERQWDDKGTGHVSSVFVESLNGIALLVVSEADGST-LLESRIQPDTAYQKQQETLIVWSE-------AESMDLALSFQEKDGCDEIWGKICSVQGK 107
[Close]
BLAST of mRNA_P-wetherbeei_contig187.1.1 vs. uniprot
Match: A0A7S4PE20_GUITH (Hypothetical protein n=2 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4PE20_GUITH)

HSP 1 Score: 107 bits (268), Expect = 7.840e-25
Identity = 53/110 (48.18%), Postives = 73/110 (66.36%), Query Frame = 1 
Query:   19 KQGWRVKVYELNSEGQWDDKGTGHIQCRVVEALGG-PALCVSSEADDSRQLVCSRVIDGDVYQRQGDNIITWSDPGAGSADAGGADLALSFQENDGCLDIWGRICDVQGR 345
            KQ  RVK+Y L  +GQWDD+GTG++  + V+  G    L V+SEADDS+ L+ +++ + DV+QRQGD I+TW++P          D+ALSFQE DG  +IW  IC VQ R
Sbjct:   17 KQIRRVKLYVLGGDGQWDDRGTGYVSYQFVQGNGAVEGLRVTSEADDSKDLLMTKIFEEDVFQRQGDTIVTWTNPETRE------DVALSFQEADGAKEIWNIICQVQSR 120
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig187.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FI53_ECTSI4.160e-4263.33SMK-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KKJ6_9PHAE3.860e-4163.33SMK-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A7S3YI92_HETAK1.650e-3957.66Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A4D9DCZ9_9STRA1.120e-2951.69SMK-1 domain-containing protein n=1 Tax=Nannochlor... [more]
A0A836CM72_9STRA1.270e-2840.85Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2D4C1_9STRA8.460e-2851.79Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2SF67_9STRA4.060e-2749.56Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A1I8J0G0_9PLAT2.290e-2554.29SMK-1 domain-containing protein n=1 Tax=Macrostomu... [more]
A0A267EGB7_9PLAT2.290e-2554.29SMK-1 domain-containing protein n=4 Tax=Macrostomu... [more]
A0A7S4PE20_GUITH7.840e-2548.18Hypothetical protein n=2 Tax=Guillardia theta TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig187contigP-wetherbeei_contig187:209..883 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FI53
Preferred nameSMEK2
PFAMsSMK-1
Model size354
Max annot lvl2759|Eukaryota
KEGG koko:K17491
KEGG Pathwayko04212,ko04922,map04212,map04922
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000075,GO:0000228,GO:0000775,GO:0000785,GO:0000790,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0005938,GO:0006109,GO:0006111,GO:0006139,GO:0006259,GO:0006281,GO:0006282,GO:0006464,GO:0006470,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006935,GO:0006950,GO:0006952,GO:0006974,GO:0007049,GO:0007063,GO:0007154,GO:0007165,GO:0007275,GO:0007346,GO:0007399,GO:0007405,GO:0008047,GO:0008104,GO:0008150,GO:0008152,GO:0008283,GO:0008287,GO:0008356,GO:0009314,GO:0009411,GO:0009416,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009968,GO:0009987,GO:0010165,GO:0010212,GO:0010564,GO:0010604,GO:0010639,GO:0010646,GO:0010648,GO:0010675,GO:0010676,GO:0010906,GO:0010907,GO:0010921,GO:0010948,GO:0015630,GO:0016311,GO:0016604,GO:0016607,GO:0017145,GO:0019208,GO:0019211,GO:0019216,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019888,GO:0022008,GO:0022402,GO:0022414,GO:0023051,GO:0023052,GO:0023057,GO:0030154,GO:0030234,GO:0030289,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031974,GO:0031981,GO:0032268,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033313,GO:0033554,GO:0034641,GO:0035303,GO:0035304,GO:0035556,GO:0036211,GO:0036445,GO:0040011,GO:0040020,GO:0042221,GO:0042330,GO:0042742,GO:0043085,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043255,GO:0043327,GO:0043412,GO:0043666,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0045165,GO:0045175,GO:0045722,GO:0045739,GO:0045786,GO:0045787,GO:0045835,GO:0045875,GO:0045913,GO:0045930,GO:0045931,GO:0045935,GO:0046483,GO:0048103,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051128,GO:0051129,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051246,GO:0051301,GO:0051321,GO:0051336,GO:0051445,GO:0051447,GO:0051598,GO:0051704,GO:0051707,GO:0051716,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0055057,GO:0055059,GO:0060255,GO:0061351,GO:0062012,GO:0062013,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0071704,GO:0071944,GO:0072089,GO:0072395,GO:0072411,GO:0072462,GO:0072542,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0098542,GO:0098687,GO:0098722,GO:0098772,GO:0099568,GO:1901360,GO:1901564,GO:1901976,GO:1901977,GO:1902494,GO:1902659,GO:1902660,GO:1903046,GO:1903293,GO:1904289,GO:1904290,GO:2000001,GO:2000002,GO:2000241,GO:2000242,GO:2000779,GO:2000781,GO:2001020,GO:2001021,GO:2001022,GO:2001032,GO:2001034,GO:2001251
Exons2
Evalue6.82e-43
EggNOG OGsKOG2175@1|root,KOG2175@2759|Eukaryota
Descriptionsignal transduction involved in meiotic cell cycle checkpoint
Cds size354
COG categoryS
BRITEko00000,ko00001,ko01009,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186153.009406-CDS-P-wetherbeei_contig187:208..3521683186153.009406-CDS-P-wetherbeei_contig187:208..352Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig187 209..352 -
1683186153.0182805-CDS-P-wetherbeei_contig187:673..8831683186153.0182805-CDS-P-wetherbeei_contig187:673..883Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig187 674..883 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig187.1.1prot_P-wetherbeei_contig187.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig187 209..883 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig187.1.1

>prot_P-wetherbeei_contig187.1.1 ID=prot_P-wetherbeei_contig187.1.1|Name=mRNA_P-wetherbeei_contig187.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=118bp
GGPAPPKQGWRVKVYELNSEGQWDDKGTGHIQCRVVEALGGPALCVSSEA
DDSRQLVCSRVIDGDVYQRQGDNIITWSDPGAGSADAGGADLALSFQEND
GCLDIWGRICDVQGRFSS
back to top

mRNA from alignment at P-wetherbeei_contig187:209..883-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig187.1.1 ID=mRNA_P-wetherbeei_contig187.1.1|Name=mRNA_P-wetherbeei_contig187.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=675bp|location=Sequence derived from alignment at P-wetherbeei_contig187:209..883- (Phaeothamnion wetherbeei SAG_119_79)
GGGGGCCCGGCGCCGCCCAAGCAGGGGTGGCGTGTCAAGGTGTACGAACT
CAACAGCGAGGGCCAGTGGGATGACAAGGGCACGGGCCATATCCAGTGCC
GGGTCGTCGAGGCGCTGGGAGGCCCCGCACTCTGTGTGTCGAGCGAGGCC
GATGACAGCCGGCAGCTCGTCTGCAGCCGCGTCATTGACGGCGACGTCTA
CCAGCGACAGGTGCGGCGGGGGATGAGGGCAGGTGGGCGAGCGAGCGGTC
GGGGATGTCAGCGGGCCGAAGGGGAAGCGGTGGGCGGTTGATTGGTTTGT
TGTTTTTTGGTAAGGTGAAGGTTTCAGTTGGGATTGTTCGCTTTGGCGGA
GGACGCTTAAGGTTTTGAAGAGAGACGATATCTTGGGTGAGGTTGCGTCT
TGAGCCAAATGCAGCATATTCATGCCTGGCGAGACGCCAAATGTCTAGAT
ATACGAGGACATTAGCAGGGATCAACGCTGTTGTCTGACGGTGCACGCAT
TATTATGTTGTGCGCTTTTTCTGGCCGGCAGGGCGACAACATCATCACCT
GGAGCGACCCGGGAGCCGGGTCGGCGGATGCCGGCGGCGCGGACCTTGCC
CTTTCCTTCCAGGAGAATGACGGCTGCCTCGACATCTGGGGCCGCATCTG
CGACGTGCAGGGCCGCTTCTCCAGC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig187:209..883-

>mRNA_P-wetherbeei_contig187.1.1 ID=mRNA_P-wetherbeei_contig187.1.1|Name=mRNA_P-wetherbeei_contig187.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=354bp|location=Sequence derived from alignment at P-wetherbeei_contig187:209..883- (Phaeothamnion wetherbeei SAG_119_79)
GGGGGCCCGGCGCCGCCCAAGCAGGGGTGGCGTGTCAAGGTGTACGAACT
CAACAGCGAGGGCCAGTGGGATGACAAGGGCACGGGCCATATCCAGTGCC
GGGTCGTCGAGGCGCTGGGAGGCCCCGCACTCTGTGTGTCGAGCGAGGCC
GATGACAGCCGGCAGCTCGTCTGCAGCCGCGTCATTGACGGCGACGTCTA
CCAGCGACAGGGCGACAACATCATCACCTGGAGCGACCCGGGAGCCGGGT
CGGCGGATGCCGGCGGCGCGGACCTTGCCCTTTCCTTCCAGGAGAATGAC
GGCTGCCTCGACATCTGGGGCCGCATCTGCGACGTGCAGGGCCGCTTCTC
CAGC
back to top