mRNA_P-wetherbeei_contig18690.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18690.1.1
Unique NamemRNA_P-wetherbeei_contig18690.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig18690.1.1 vs. uniprot
Match: A0A835ZD68_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD68_9STRA)

HSP 1 Score: 105 bits (263), Expect = 4.170e-22
Identity = 53/94 (56.38%), Postives = 63/94 (67.02%), Query Frame = 1 
Query:  325 AAARRWRERTDDYGRQYWVHDVTGEALFERPAEAAYVPPPGRDELGSKVDPFIQHLRAWVAAQDAWGRTFYTNSRTGETSWEEPPGWKQLASAD 606
            AAA RW+ RTD YGR ++ +  TGEA +ERPAEAAY PP GRDELG+  D   Q LR W    D  GRT+Y N RTGE +W+ P GW + A AD
Sbjct:  496 AAAARWQLRTDAYGRAFYENWATGEARYERPAEAAYRPPLGRDELGAPCDARRQALRDWEPQTDPLGRTYYENQRTGEKAWDPPFGW-EAAQAD 588
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BLAST of mRNA_P-wetherbeei_contig18690.1.1 vs. uniprot
Match: F0YN92_AURAN (WW domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YN92_AURAN)

HSP 1 Score: 100 bits (249), Expect = 2.850e-20
Identity = 75/214 (35.05%), Postives = 105/214 (49.07%), Query Frame = 1 
Query:    1 RNAAKSEIKLEEIQKDIDER----------LAEALDVRVAPLQDEVAALHAALESARADRDAELRRLAALWPIAAGWLPPSALRRHLPVADADLE-QLRAELAEQSXXXXXXXXXXXXVAAARRWRERTDDYGRQYWVHDVTGEALFERPAEAAYVPPPGRDELGS-KVDPFIQHLR--AWVAAQDAWGRTFYTNSRTGETSWEEPPGWKQLAS 600
            R A +S+ K+ E+ K +D+           LA A++  V P++ EV+     L   R  R  E R+LAALWP     L P ALRRH+ + D D+  QL       +            VAAA RW + TDDYGR+Y+VH  TGEA ++ P     + P     LG   +   ++ +R  AWV   D WG+  + N+ TGE SW +P      AS
Sbjct:  190 RKAKESQSKVSELDKTLDKAQKELANLRGSLASAVEAEVKPMRAEVSKARDTLSRERLARVVERRQLAALWP--PDHLAPVALRRHM-IMDTDVRNQLLCSALTAAADSEIKREIRRRVAAASRWSQTTDDYGRKYFVHADTGEAAWDPPP--TMLSPAALASLGYFMMSSNVEEMRSGAWVETMDEWGQASWRNTLTGEVSWLQPKAQSAAAS 398
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BLAST of mRNA_P-wetherbeei_contig18690.1.1 vs. uniprot
Match: A0A8J2SKP7_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SKP7_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 4.410e-19
Identity = 64/211 (30.33%), Postives = 93/211 (44.08%), Query Frame = 1 
Query:   61 LAEALDVRVAPLQDEVAALHAALESARADRDAELRRLAALWPIAAGWLPPSALRRHLPVADADLEQLRAELAEQSXXXXXXXXXXXXVAAARRWRERTDDYGRQYWVHDVTGEALFERPAEAAYVPPPGRDELG------------SKVDPFIQHLR-------------------------AWVAAQDAWGRTFYTNSRTGETSWEEPPG 582
            L  A++  V P++ E++     +   R  R  E  +LA+LWPI      P ALRRH+ VA  +   L       +            VA A +W E+TDDYGR+Y+VH  TG+A +E P    Y PPPGR++LG            +K+   + +                           +W    D WG+  + N RT E SW++PPG
Sbjct:  280 LDRAVEAEVEPMRAEISRARDTISRERVARIIERGQLASLWPIDQPL--PVALRRHVQVAKDERRMLFERACGAAAETEIKIEVRRRVADALKWSEKTDDYGRKYYVHSDTGDAAWEPPVAMLYEPPPGRNDLGMIVGLSEESVTKNKIPRSLSYGHEQGPKEPTTANPSHASSAVREPSSDSWQETVDEWGQVSWKNKRTNEVSWQKPPG 488
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18690.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835ZD68_9STRA4.170e-2256.38Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
F0YN92_AURAN2.850e-2035.05WW domain-containing protein n=1 Tax=Aureococcus a... [more]
A0A8J2SKP7_9STRA4.410e-1930.33Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18690contigP-wetherbeei_contig18690:406..1187 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LP13
Preferred nameVAC8
PFAMsArm
Model size782
Max annot lvl2759|Eukaryota
KEGG koko:K08332
Hectar predicted targeting categoryother localisation
GOsGO:0000011,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0006914,GO:0006996,GO:0007033,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009607,GO:0009987,GO:0016020,GO:0016043,GO:0016050,GO:0016236,GO:0016237,GO:0022406,GO:0022607,GO:0030447,GO:0030448,GO:0031090,GO:0032258,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034727,GO:0036180,GO:0040007,GO:0042144,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043495,GO:0044085,GO:0044182,GO:0044232,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0044804,GO:0048284,GO:0048308,GO:0050896,GO:0051179,GO:0051640,GO:0051641,GO:0061024,GO:0061025,GO:0061919,GO:0070727,GO:0070925,GO:0071255,GO:0071561,GO:0071562,GO:0071563,GO:0071840,GO:0072665,GO:0097576,GO:0098588,GO:0098805,GO:0098852,GO:0140056
Exons1
Evalue1.86e-34
EggNOG OGsKOG4224@1|root,KOG4224@2759|Eukaryota
Descriptionnucleus-vacuole junction assembly
Cds size780
COG categoryS
BRITEko00000,ko03029,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186152.8475258-CDS-P-wetherbeei_contig18690:407..11871683186152.8475258-CDS-P-wetherbeei_contig18690:407..1187Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18690 408..1187 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18690.1.1prot_P-wetherbeei_contig18690.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18690 408..1187 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18690.1.1

>prot_P-wetherbeei_contig18690.1.1 ID=prot_P-wetherbeei_contig18690.1.1|Name=mRNA_P-wetherbeei_contig18690.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=260bp
RNAAKSEIKLEEIQKDIDERLAEALDVRVAPLQDEVAALHAALESARADR
DAELRRLAALWPIAAGWLPPSALRRHLPVADADLEQLRAELAEQSAEREV
RREVRRAVAAARRWRERTDDYGRQYWVHDVTGEALFERPAEAAYVPPPGR
DELGSKVDPFIQHLRAWVAAQDAWGRTFYTNSRTGETSWEEPPGWKQLAS
ADRHAGNGGGNGGGGGNGGEAAVAAEARPKEAEVAAWKAEAAKRAAAAAA
ADVVVWMCDQ
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mRNA from alignment at P-wetherbeei_contig18690:406..1187-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18690.1.1 ID=mRNA_P-wetherbeei_contig18690.1.1|Name=mRNA_P-wetherbeei_contig18690.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=782bp|location=Sequence derived from alignment at P-wetherbeei_contig18690:406..1187- (Phaeothamnion wetherbeei SAG_119_79)
CGCAACGCCGCGAAATCCGAAATCAAGCTGGAAGAGATCCAGAAGGACAT
AGACGAGCGGCTGGCGGAAGCGCTCGACGTCCGCGTCGCACCCTTACAGG
ACGAAGTCGCAGCGCTGCACGCCGCACTGGAAAGCGCGCGCGCCGACCGC
GATGCCGAGCTGCGACGGCTGGCGGCGCTGTGGCCGATCGCCGCCGGCTG
GCTGCCGCCATCGGCGCTCCGCCGGCACCTTCCCGTCGCCGACGCGGACT
TAGAACAGCTGCGGGCGGAGTTGGCGGAGCAGAGCGCCGAGCGGGAGGTG
CGGCGGGAGGTCCGGCGGGCAGTGGCAGCGGCACGGCGGTGGCGGGAGCG
GACTGATGACTACGGCCGGCAGTACTGGGTGCACGACGTCACCGGCGAGG
CGCTCTTCGAGCGGCCGGCGGAGGCGGCGTACGTACCGCCGCCGGGCCGC
GACGAGCTCGGCAGCAAGGTCGACCCGTTCATCCAGCACCTGCGAGCGTG
GGTGGCAGCGCAGGATGCCTGGGGCCGGACATTCTACACCAACTCCCGGA
CAGGCGAGACCTCATGGGAGGAGCCGCCGGGCTGGAAGCAGCTAGCGTCG
GCCGACCGTCACGCCGGCAATGGCGGCGGTAATGGCGGCGGCGGAGGTAA
TGGTGGCGAGGCTGCAGTCGCGGCAGAAGCACGGCCAAAAGAGGCAGAAG
TAGCGGCATGGAAGGCGGAGGCCGCCAAGCGCGCGGCGGCAGCCGCGGCA
GCGGATGTGGTGGTGTGGATGTGTGATCAGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18690:406..1187-

>mRNA_P-wetherbeei_contig18690.1.1 ID=mRNA_P-wetherbeei_contig18690.1.1|Name=mRNA_P-wetherbeei_contig18690.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=780bp|location=Sequence derived from alignment at P-wetherbeei_contig18690:406..1187- (Phaeothamnion wetherbeei SAG_119_79)
CGCAACGCCGCGAAATCCGAAATCAAGCTGGAAGAGATCCAGAAGGACAT
AGACGAGCGGCTGGCGGAAGCGCTCGACGTCCGCGTCGCACCCTTACAGG
ACGAAGTCGCAGCGCTGCACGCCGCACTGGAAAGCGCGCGCGCCGACCGC
GATGCCGAGCTGCGACGGCTGGCGGCGCTGTGGCCGATCGCCGCCGGCTG
GCTGCCGCCATCGGCGCTCCGCCGGCACCTTCCCGTCGCCGACGCGGACT
TAGAACAGCTGCGGGCGGAGTTGGCGGAGCAGAGCGCCGAGCGGGAGGTG
CGGCGGGAGGTCCGGCGGGCAGTGGCAGCGGCACGGCGGTGGCGGGAGCG
GACTGATGACTACGGCCGGCAGTACTGGGTGCACGACGTCACCGGCGAGG
CGCTCTTCGAGCGGCCGGCGGAGGCGGCGTACGTACCGCCGCCGGGCCGC
GACGAGCTCGGCAGCAAGGTCGACCCGTTCATCCAGCACCTGCGAGCGTG
GGTGGCAGCGCAGGATGCCTGGGGCCGGACATTCTACACCAACTCCCGGA
CAGGCGAGACCTCATGGGAGGAGCCGCCGGGCTGGAAGCAGCTAGCGTCG
GCCGACCGTCACGCCGGCAATGGCGGCGGTAATGGCGGCGGCGGAGGTAA
TGGTGGCGAGGCTGCAGTCGCGGCAGAAGCACGGCCAAAAGAGGCAGAAG
TAGCGGCATGGAAGGCGGAGGCCGCCAAGCGCGCGGCGGCAGCCGCGGCA
GCGGATGTGGTGGTGTGGATGTGTGATCAG
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