mRNA_P-wetherbeei_contig18688.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18688.2.1
Unique NamemRNA_P-wetherbeei_contig18688.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig18688.2.1 vs. uniprot
Match: A0A2A6REH5_9CHLR (Glycosyl transferase n=2 Tax=Candidatus Viridilinea mediisalina TaxID=2024553 RepID=A0A2A6REH5_9CHLR)

HSP 1 Score: 78.6 bits (192), Expect = 8.410e-15
Identity = 45/123 (36.59%), Postives = 73/123 (59.35%), Query Frame = 1 
Query:    1 VEFVYDHEAGAHHYADRSFDSWRNMARSYGENDVAFARGGQTWLLGTMSQEFRSRHRLVQTLVRTCVPRPRLAAATSAALARVARITGRTGPQAVAHQALSAIYGLTYFQGVAAALGSSDRLL 369
            ++F ++ +A A+HYA+RS+ +W  +  SYG ND+ FAR G+T +   + +EF  RH  V+ LV  C+ R  L+  ++  L  +A  +   G ++++  ALS I+ L Y+QGVA  LG     L
Sbjct:  200 IQFYFNPKAIAYHYAERSWQAWIAIPYSYGRNDIIFARAGETSINRVLYKEFCQRHPFVRLLVLLCLDRFTLSRLSTTGLQALAVRSYNLGWRSLSRFALSGIFNLRYYQGVADELGGRQYFL 322
[Close]
BLAST of mRNA_P-wetherbeei_contig18688.2.1 vs. uniprot
Match: A0A848UI47_9ACTN (Glycosyltransferase family 2 protein n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A848UI47_9ACTN)

HSP 1 Score: 72.8 bits (177), Expect = 1.120e-12
Identity = 51/125 (40.80%), Postives = 67/125 (53.60%), Query Frame = 1 
Query:    1 VEFVYDHEAGAHHYADRSFDSWRNMARSYGENDVAFARG-GQTWLLGTMSQEFRSRHRLVQTLVRTCVPRPRLAA-ATSAALARVARITGRTGPQAVAHQALSAIYGLTYFQGVAAALGSSDRLL 369
            ++F +  EA   HYA+R F SWR  A  YG NDV F R  G+  LL     EF  RH L++ L  +   R R+A  A    +A   ++  RTGP A+   ALSA+Y L Y+ G+A  LG    LL
Sbjct:  201 LKFTFVAEAVVLHYAERPFTSWRAAAGQYGRNDVIFGRELGREDLLRQFCAEFHYRHPLIR-LTTSITLRSRVARRALVPVVAAATKLLCRTGPTALTDAALSALYNLEYYHGMADQLGGGRELL 324
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18688.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2A6REH5_9CHLR8.410e-1536.59Glycosyl transferase n=2 Tax=Candidatus Viridiline... [more]
A0A848UI47_9ACTN1.120e-1240.80Glycosyltransferase family 2 protein n=1 Tax=Iluma... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18688contigP-wetherbeei_contig18688:959..1327 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog867845.KI911784_gene617
PFAMsGlyco_tranf_2_3,Glycos_transf_2
Model size369
Max annot lvl32061|Chloroflexia
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.53e-19
EggNOG OGsCOG1216@1|root,COG1216@2|Bacteria,2GAH6@200795|Chloroflexi,377WE@32061|Chloroflexia
DescriptionPFAM glycosyl transferase family 2
Cds size369
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186152.6542315-CDS-P-wetherbeei_contig18688:958..13271683186152.6542315-CDS-P-wetherbeei_contig18688:958..1327Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18688 959..1327 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18688.2.1prot_P-wetherbeei_contig18688.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18688 959..1327 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18688.2.1

>prot_P-wetherbeei_contig18688.2.1 ID=prot_P-wetherbeei_contig18688.2.1|Name=mRNA_P-wetherbeei_contig18688.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=123bp
VEFVYDHEAGAHHYADRSFDSWRNMARSYGENDVAFARGGQTWLLGTMSQ
EFRSRHRLVQTLVRTCVPRPRLAAATSAALARVARITGRTGPQAVAHQAL
SAIYGLTYFQGVAAALGSSDRLL
back to top

mRNA from alignment at P-wetherbeei_contig18688:959..1327-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18688.2.1 ID=mRNA_P-wetherbeei_contig18688.2.1|Name=mRNA_P-wetherbeei_contig18688.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=369bp|location=Sequence derived from alignment at P-wetherbeei_contig18688:959..1327- (Phaeothamnion wetherbeei SAG_119_79)
GTCGAGTTCGTCTACGACCACGAAGCCGGCGCGCACCACTACGCCGACCG
CAGCTTCGACTCCTGGCGCAACATGGCGCGCAGCTACGGCGAGAACGACG
TCGCCTTCGCTCGCGGCGGCCAGACGTGGTTGCTGGGCACGATGTCGCAG
GAGTTCCGGTCGCGTCATCGCCTCGTCCAGACGCTGGTGCGCACGTGCGT
CCCGCGCCCGCGCCTGGCCGCGGCGACCTCGGCGGCGCTGGCCCGCGTCG
CTCGCATCACCGGTCGTACCGGCCCGCAGGCCGTGGCCCATCAGGCGCTC
AGCGCGATCTACGGGCTGACGTACTTCCAGGGCGTCGCCGCGGCGCTCGG
CTCGTCGGATCGGTTGCTC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig18688:959..1327-

>mRNA_P-wetherbeei_contig18688.2.1 ID=mRNA_P-wetherbeei_contig18688.2.1|Name=mRNA_P-wetherbeei_contig18688.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=369bp|location=Sequence derived from alignment at P-wetherbeei_contig18688:959..1327- (Phaeothamnion wetherbeei SAG_119_79)
GTCGAGTTCGTCTACGACCACGAAGCCGGCGCGCACCACTACGCCGACCG
CAGCTTCGACTCCTGGCGCAACATGGCGCGCAGCTACGGCGAGAACGACG
TCGCCTTCGCTCGCGGCGGCCAGACGTGGTTGCTGGGCACGATGTCGCAG
GAGTTCCGGTCGCGTCATCGCCTCGTCCAGACGCTGGTGCGCACGTGCGT
CCCGCGCCCGCGCCTGGCCGCGGCGACCTCGGCGGCGCTGGCCCGCGTCG
CTCGCATCACCGGTCGTACCGGCCCGCAGGCCGTGGCCCATCAGGCGCTC
AGCGCGATCTACGGGCTGACGTACTTCCAGGGCGTCGCCGCGGCGCTCGG
CTCGTCGGATCGGTTGCTC
back to top