mRNA_P-wetherbeei_contig18683.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig18683.2.1 vs. uniprot
Match: T0HU73_9SPHN (HTH tetR-type domain-containing protein n=2 Tax=Sphingomonadaceae TaxID=41297 RepID=T0HU73_9SPHN) HSP 1 Score: 197 bits (500), Expect = 2.190e-60 Identity = 97/192 (50.52%), Postives = 133/192 (69.27%), Query Frame = 1
Query: 34 RRHRILDAAALLIRSTRGTDFSMRALAEAAEVSPATPYNLFTSKEGLLYALLSRSLDEITLRGLAFQSNDPLERVLEAAAQAADIFLHDPDFMRPLYQFLLGVVDPIHRPKFIERSLAYWRSALASAEQAHLLVPDFEADVLVYTLMAHFMGVLEFWIHDDIDGSGFKARVIHDTVLLLLPLADDARRPRLL 609
RRHRILDAA LIR T GTDFS+R LA AEV+PATP+NLF+SKE LLYALLSRSLD I GL F+S + L ++EAA A D+F DP+FMRPLY+ LLGV D +HRP+F+ERS+ YW++A+A+ LL + + + L + A F+G+LEFW+H + D F+ ++ + ++ L D + ++L
Sbjct: 4 RRHRILDAAERLIRKTGGTDFSVRTLASVAEVAPATPFNLFSSKEALLYALLSRSLDTIISEGLKFKSPNRLFHIVEAATNAVDMFARDPEFMRPLYRVLLGVSDDVHRPRFMERSIGYWKTAVATIPDQKLLSTERQRNFLTAAIQAQFLGLLEFWVHQEFDDDTFRQHSVYGVLSNIMGLLDSENKEQML 195
BLAST of mRNA_P-wetherbeei_contig18683.2.1 vs. uniprot
Match: UPI001673F2C8 (TetR/AcrR family transcriptional regulator n=1 Tax=Novosphingobium colocasiae TaxID=1256513 RepID=UPI001673F2C8) HSP 1 Score: 172 bits (437), Expect = 7.910e-51 Identity = 94/202 (46.53%), Postives = 124/202 (61.39%), Query Frame = 1
Query: 4 MSLRARQVDARRHRILDAAALLIRSTRGTDFSMRALAEAAEVSPATPYNLFTSKEGLLYALLSRSLDEITLRGLAFQSNDPLERVLEAAAQAADIFLHDPDFMRPLYQFLLGVVDPIHRPKFIERSLAYWRSALASAEQAHLLVPDFEADVLVYTLMAHFMGVLEFWIHDDIDGSGFKARVIHDTVLLLLPLADDARRPRLL 609
+S R +Q + RR ILD A LIR T GTDF +R LA A+V+ ATP+NLF SKEGLLY+LL+RSLD+IT GLAF P +RV+E A FL DP+ +RPLY LL V P HRP+F+ R+L +W +A +A + D D + ++MAHF+GVLE W+H DI F+ + + T LL + RLL
Sbjct: 4 ISKREQQKNLRRGTILDVAERLIRETGGTDFPIRTLAAQADVAFATPFNLFGSKEGLLYSLLARSLDQITAAGLAFTEPRPADRVIETTRSAVASFLADPELLRPLYLVLLSVSHPDHRPRFMARALRFWHTAARAASDPARTIDDALVDAVARSMMAHFVGVLELWVHRDISDEQFERQTVIGTSLLARAIVSPEDSERLL 205
BLAST of mRNA_P-wetherbeei_contig18683.2.1 vs. uniprot
Match: A0A4R7P6Z3_9GAMM (TetR family transcriptional regulator n=1 Tax=Panacagrimonas perspica TaxID=381431 RepID=A0A4R7P6Z3_9GAMM) HSP 1 Score: 167 bits (423), Expect = 4.160e-48 Identity = 96/209 (45.93%), Postives = 130/209 (62.20%), Query Frame = 1
Query: 22 QVDARRHRILDAAALLIRSTRGTDFSMRALAEAAEVSPATPYNLFTSKEGLLYALLSRSLDEI---TLRGLAFQSNDPLERVLEAAAQAADIFLHDPDFMRPLYQFLLGVVDPIHRPKFIERSLAYWRSALASAEQAHLLVPDFEADVLVYTLMAHFMGVLEFWIHDDIDGSGFKARVIHDTVLLLLPLADDARRPRLLRRLREARRAL 639
Q + R+ RILDAA LIR T T+FSM LAE A +S TPYNLF SK G+LYALL+RS+D + RG +S DP+E VL AA A D F DP F RPLYQFLLG+ DP++RP +++R+L YW+ AL +A L D L ++ + +G L+ W+ ++D F+A+V++ T +LL +AD +R L RLR R L
Sbjct: 6 QKEDRKRRILDAAEALIRKTGTTEFSMAVLAERASLSGPTPYNLFGSKGGILYALLNRSVDGLFSDIARGRG-KSPDPVEMVLHAAQTAGDEFASDPRFYRPLYQFLLGIHDPVNRPAYMDRALFYWKQALLHLAEAGQLPEVISHDQLARMMVVNTLGALDLWVQSELDDDQFRAQVLYGTAVLLYSVADATQRDHLSARLRVLERQL 213
BLAST of mRNA_P-wetherbeei_contig18683.2.1 vs. uniprot
Match: A0A653IW91_9SPHN (TetR family transcriptional regulator n=1 Tax=Novosphingobium sp. 9U TaxID=2653158 RepID=A0A653IW91_9SPHN) HSP 1 Score: 148 bits (373), Expect = 4.670e-41 Identity = 77/198 (38.89%), Postives = 120/198 (60.61%), Query Frame = 1
Query: 13 RARQVDARRHRILDAAALLIRSTRGTDFSMRALAEAAEVSPATPYNLFTSKEGLLYALLSRSLDEITLRGLAFQSNDPLERVLEAAAQAADIFLHDPDFMRPLYQFLLGVVDPIHRPKFIERSLAYWRSALASAEQAHLLVPDFEADVLVYTLMAHFMGVLEFWIHDDIDGSGFKARVIHDTVLLLLPLADDARRPRL 606
R ++ D ++H IL +A L+R+ T+FSM L+ +A +S AT YNL SK +LYALL+ SLD++ + Q NDP+E + A+ AA+ F D +PLY++LLGV DP+HRP F+ R+LA+W LA A +L P + L +F+G L+ W+ ++ GF+A++I+ ++L L + +A R RL
Sbjct: 9 REKKKDEKKHTILASAEALVRAQGHTEFSMAELSRSAGLSTATIYNLLQSKASVLYALLNSSLDKV-IAATPAQGNDPVENAIRASEIAANTFTSDTALFKPLYRYLLGVSDPVHRPAFMGRALAFWMEHLAGLRDAGMLPPGVGLEELARDHQIYFLGTLDLWVQGELSDEGFRAQIIYSSILRLYAVPGEAERGRL 205
BLAST of mRNA_P-wetherbeei_contig18683.2.1 vs. uniprot
Match: UPI001E4B58F2 (TetR/AcrR family transcriptional regulator n=1 Tax=Novosphingobium colocasiae TaxID=1256513 RepID=UPI001E4B58F2) HSP 1 Score: 130 bits (327), Expect = 1.620e-34 Identity = 74/190 (38.95%), Postives = 107/190 (56.32%), Query Frame = 1
Query: 46 ILDAAALLIRSTRGTDFSMRALAEAAEVSPATPYNLFTSKEGLLYALLSRSLDEITLR-GLAFQSNDPLERVLEAAAQAADIFLHDPDFMRPLYQFLLGVVDPIHRPKFIERSLAYWRSALASAEQAHLLVPDFEADVLVYTLMAHFMGVLEFWIHDDIDGSGFKARVIHDTVLLLLPLADDARRPRLLR 612
+L AA LIR T FS+ LA + S A+ YN+ +K ++YALL+ +D I + G + + DP+ L+A+ AA+ F DPDF+RPLY +LLGV D HRP F+ RSLA+W + L A LL P + M F G L+ W+ ++D S F+ +V ++ LL + D + R RLLR
Sbjct: 1 MLVAAEALIRETGSVSFSVGELARRSNSSVASLYNMIGTKSTIIYALLNEVMDGIIFKSGNSRKLKDPISAALDASEMAANFFTSDPDFLRPLYGYLLGVADETHRPAFMARSLAFWLTRLEPISAAGLLPPQIPLEAFAQDHMLFFAGALDQWVQGELDNSQFEQQVRTAAIMRLLIIDDQSIRERLLR 190
BLAST of mRNA_P-wetherbeei_contig18683.2.1 vs. uniprot
Match: A0A328XMU4_9BURK (TetR family transcriptional regulator n=3 Tax=Paraburkholderia unamae TaxID=219649 RepID=A0A328XMU4_9BURK) HSP 1 Score: 128 bits (321), Expect = 1.940e-33 Identity = 77/188 (40.96%), Postives = 102/188 (54.26%), Query Frame = 1
Query: 28 DARRHRILDAAALLIRSTRGTDFSMRALAEAAEVSPATPYNLFTSKEGLLYALLSRSLDEITLRGLAFQSNDPLERVL-EAAAQAADIFLHDPDFMRPLYQFLLGVVDPIHRPKFIERSLAYWRSALASAEQAHLLVPDFEADVLVYTLMAHFMGVLEFWIHDDIDGSGFKARVIHDTVLLLLPLADD 588
+ARR I AA LIR T TDFSMR LA+ A +S AT YNL SK +LYALL+R D + G+A ++ + L +A +A F DP+F RPL +FLL V DP+HRP F+ R LAYWR + E A L A + F G L+ WIH++ F+ + LL+L + D
Sbjct: 10 EARREAIFAAAEALIRRTGHTDFSMRDLAQEAGLSLATAYNLIGSKSTVLYALLNRRADALAEPGVAPKAGVAMHDHLGNSARRAVRQFTGDPEFFRPLMRFLLSVPDPVHRPAFMARGLAYWRGVMQPMESAGRLPDGMRASDFASVVHLVFTGALDMWIHEEYSARRFQQELDKCLALLMLAIRKD 197
BLAST of mRNA_P-wetherbeei_contig18683.2.1 vs. uniprot
Match: UPI001376D01F (hypothetical protein n=1 Tax=Polycyclovorans algicola TaxID=616992 RepID=UPI001376D01F) HSP 1 Score: 105 bits (261), Expect = 2.520e-24 Identity = 56/167 (33.53%), Postives = 92/167 (55.09%), Query Frame = 1
Query: 139 TPYNLFTSKEGLLYALLSRSLDEITLRGLAFQSNDPLERVLEAAAQAADIFLHDPDFMRPLYQFLLGVVDPIHRPKFIERSLAYWRSALASAEQAHLLVPDFEADVLVYTLMAHFMGVLEFWIHDDIDGSGFKARVIHDTVLLLLPLADDARRPRLLRRLREARRAL 639
T YNL SK +LY LL+R++D+ +S+DP ++ L AA A +++ D ++RPL++F LGV++P HRP + R+L +W S L + +A L L F GVL+ W+ +++ + +A+V + +L LL L D RL+ LR+ + L
Sbjct: 53 TLYNLLGSKGAILYGLLNRTMDQFEAATATPESDDPYDQALTAATTVARVYVQDSAYLRPLWRFELGVIEPEHRPVLMNRALKFWASRLGALARAGRLPKGVGLPDLAREYQIFFAGVLDLWVQNELSDAQLEAQVRYGILLRLLALGDSEEHARLMADLRKTHQRL 219
BLAST of mRNA_P-wetherbeei_contig18683.2.1 vs. uniprot
Match: UPI001FA7566E (TetR/AcrR family transcriptional regulator n=1 Tax=Caulobacter sp. CCUG 60055 TaxID=2100090 RepID=UPI001FA7566E) HSP 1 Score: 104 bits (259), Expect = 4.740e-24 Identity = 75/196 (38.27%), Postives = 99/196 (50.51%), Query Frame = 1
Query: 4 MSLRARQVDARRHRILDAAALLIRSTRGTDFSMRALAEAAEVSPATPYNLFTSKEGLLYALLSRSLDEITLRGLAFQSNDPLERVLEAAAQAADIFLHDPDFMRPLYQFLLGVVDPIHRPKFIERSLAYWRSALASAEQAHLLVPDFEADVLVYTLMAHFMGVLEFWIHDDIDGSGFKARVIHDTVLLLLPLADDA 591
+S R R + RR RI++AA LIR+T T SMRALAE A VS ATPYNLF SK+ ++ +L L A DPL R+ + A AA + DP F R L+ L G P R F A W + +A+ A L + +AD+L L F L WI +ID + +AR+ +L ADDA
Sbjct: 5 ISQRERGMAERRARIVEAARDLIRATGDTGLSMRALAERAGVSLATPYNLFGSKQAVMLGVLEADLAAFRAGLDAAGPGDPLRRLFDNVALAARFYDEDPGFYRALFTALAGAGGPELRLLFGPPRHALWVEMIQAAQAAGQLRGEVDADLLARALEGVFGAALPGWIAGEIDAATLEARIGFGFAAVLGGAADDA 200
BLAST of mRNA_P-wetherbeei_contig18683.2.1 vs. uniprot
Match: A0A059FBE0_9PROT (TetR family transcriptional regulator n=1 Tax=Hyphomonas johnsonii MHS-2 TaxID=1280950 RepID=A0A059FBE0_9PROT) HSP 1 Score: 99.8 bits (247), Expect = 2.660e-22 Identity = 66/168 (39.29%), Postives = 91/168 (54.17%), Query Frame = 1
Query: 13 RARQVDARRHRILDAAALLIRSTRGTDFSMRALAEAAEVSPATPYNLFTSKEGLLYALLSRSLDEITLRGLAFQSNDPLERVLEAAAQAADIFLHDPDFMRPLYQFLLGVVDP----IHRPKFIERSLAYWRSALASAEQAHLLVPDFEADVLVYTLMAHFMGVLEFW 504
R R RR RI+ AA LIR T TD SMR +A+ A+VS ATPYNLF SK ++ A+ D R ++++ LER+ +A A A F DPDF RPL++ LL V + P+ +ER+ W + ++ A+Q LL P + AD L L GV+ W
Sbjct: 9 RERAKAERRSRIVRAARDLIRETGDTDLSMRMIAKRADVSLATPYNLFGSKHAVVLAVFEDERD-FAERFSKLKADNALERLFDAHALATSYFTEDPDFYRPLWKALLDVQGAKDTGLATPERLERNSQAWEALISDAQQEGLLAPAYPADTLERMLSLFANGVMLSW 175
BLAST of mRNA_P-wetherbeei_contig18683.2.1 vs. uniprot
Match: A0A062U9Z1_9PROT (HTH tetR-type domain-containing protein n=2 Tax=Hyphomonas chukchiensis TaxID=1280947 RepID=A0A062U9Z1_9PROT) HSP 1 Score: 92.0 bits (227), Expect = 3.490e-19 Identity = 59/162 (36.42%), Postives = 90/162 (55.56%), Query Frame = 1
Query: 34 RRHRILDAAALLIRSTRGTDFSMRALAEAAEVSPATPYNLFTSKEGLLYALLSRSLDEITLRGLAFQSNDPLERVLEAAAQAADIFLHDPDFMRPLYQFLLGVVDP----IHRPKFIERSLAYWRSALASAEQAHLLVPDFEADVLVYTLMAHFMGVLEFWI 507
RR RI+ AA LIR T T+ SMR +A+ A+VS ATPYNLF SK ++ A+ D +R ++ + LER+ EA A A+ F DPDF + +++ LL P + P+ +ER+ A WR+ + +A+ L+ F + L +L GV+ W+
Sbjct: 19 RRSRIVQAARDLIRETGDTNLSMRMIAKRADVSLATPYNLFGSKRAVVLAVFEDERD-FAVRFSKIKAANALERLFEAQALASSYFTDDPDFYQTIWKALLDTRSPNDTGLATPERLERNSAAWRALIEAAQTEGLIKASFASAALERSLSYFANGVMLSWV 179 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18683.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig18683.2.1 >prot_P-wetherbeei_contig18683.2.1 ID=prot_P-wetherbeei_contig18683.2.1|Name=mRNA_P-wetherbeei_contig18683.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=212bp MSLRARQVDARRHRILDAAALLIRSTRGTDFSMRALAEAAEVSPATPYNLback to top mRNA from alignment at P-wetherbeei_contig18683:671..1309- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig18683.2.1 ID=mRNA_P-wetherbeei_contig18683.2.1|Name=mRNA_P-wetherbeei_contig18683.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=639bp|location=Sequence derived from alignment at P-wetherbeei_contig18683:671..1309- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig18683:671..1309- >mRNA_P-wetherbeei_contig18683.2.1 ID=mRNA_P-wetherbeei_contig18683.2.1|Name=mRNA_P-wetherbeei_contig18683.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=636bp|location=Sequence derived from alignment at P-wetherbeei_contig18683:671..1309- (Phaeothamnion wetherbeei SAG_119_79)back to top |