mRNA_P-wetherbeei_contig1867.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1867.2.1
Unique NamemRNA_P-wetherbeei_contig1867.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1867.2.1 vs. uniprot
Match: A0A6H5K0A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0A5_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 1.790e-16
Identity = 55/137 (40.15%), Postives = 79/137 (57.66%), Query Frame = 3 
Query:  231 LLVAPACTLRAGEIDDISLLLSQSCSSFGKVYGTD-------QAPYLSILHKSPARGIDGAVAAQVSDREVMDAVFLYIQQALLGYSDDNEEDFVKLGRQLLTVERHTVTPAASEAAFFEAFWSTAADVAQFTTESS 620
            LLVAP+CT+ +G    +   LS SC S  KVY  D       +AP+L++ H+             VS + VM+ VFL++Q+ +LG  DD EEDFV+LGR+LLTV R+ V  A +E    +AFW  A  +A+   E++
Sbjct:  113 LLVAPSCTIESGCTTALEAALSSSCIS--KVYHPDVEQGLGGKAPHLALWHQG------------VSKKAVMEEVFLWLQRTMLGMVDDEEEDFVELGRRLLTVHRYVVVKATTEVELSQAFWQEATALAKHGAEAA 235
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BLAST of mRNA_P-wetherbeei_contig1867.2.1 vs. uniprot
Match: D7FQR9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQR9_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 1.980e-16
Identity = 56/144 (38.89%), Postives = 85/144 (59.03%), Query Frame = 3 
Query:  231 LLVAPACTLRAGEIDDISLLLSQSCSSFGKVYGTD-------QAPYLSILHK-------SPARGIDGAVAAQVSDREVMDAVFLYIQQALLGYSDDNEEDFVKLGRQLLTVERHTVTPAASEAAFFEAFWSTAADVAQFTTESS 620
            LLVAP+C + +G    +   LS SC S  KVY  D       +AP+L++ H+       SP+  ++   A+ +S + VM+ VFL++Q+ +LG  DD EEDFV+LGR+LLTV R+ V  A +E    +AFW  A  +A+   E++
Sbjct:  113 LLVAPSCVIESGCTTALEAALSSSCIS--KVYHPDVEQGLGGKAPHLALWHQGVAAEELSPSNDLEQKTAS-LSKKAVMEEVFLWLQRTMLGMVDDEEEDFVELGRKLLTVHRYVVVKATTEVELSQAFWQEATALAKHGVEAA 253
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BLAST of mRNA_P-wetherbeei_contig1867.2.1 vs. uniprot
Match: A0A6V2RZP2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2RZP2_HETAK)

HSP 1 Score: 79.7 bits (195), Expect = 4.260e-13
Identity = 74/256 (28.91%), Postives = 131/256 (51.17%), Query Frame = 3 
Query:  138 EMTSVTVTETTNVMNLVSAYFGSTTTARTDTLLVAP--ACTLRAGEIDDISLLLSQSCSSFGKVYGTD------QAPYLSILHKSPARGIDGAVAAQV--SDREVMDAVFLYIQQALLGYSDDNEEDFVKLGRQLLTVERHTVTPAASEAAFFEAFWSTAADVAQ-------FTTESSVMLVAPGFAERPDDFSRLLETGGGSPLGRLLASAGAAS---VSATAF-AGGGLRYPFVIVSPPIEEIVAPEDGYKVIT 842
            E  S+  +    V  +V+ ++GS +TA  +T++VAP       A ++  +   L +  ++F  VY  +      ++P+ ++ H +         A+Q   +  +VM+ +F + Q  LL   D  EE+F+ LGR+++T++   V  A++EA    A W+ AA +++          E+SV++VAP   +    F+  ++   G PL ++ A    AS   +   AF A  GLR+P V+V P + E+ APED  KV+T
Sbjct:   64 EAPSIVESTADTVAGVVADFYGSVSTAAGETVVVAPRVGAGWGAAQVYAVEGAL-RPAAAFRAVYHPESHDEGLRSPHFALHHHAGLAAAAEPPASQPLPTREDVMEDIFTWFQNQLLR-EDLEEEEFIDLGRKMITIQEVVVCGASTEAGLLSACWAEAARLSRPGAAIQANEEENSVLIVAPFLGKGGGAFAGFVQKAFGGPLAQVTAQGMGASDGVLVCHAFPAEDGLRHPMVLVHPVLVELEAPEDA-KVMT 316
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BLAST of mRNA_P-wetherbeei_contig1867.2.1 vs. uniprot
Match: L1J969_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1J969_GUITC)

HSP 1 Score: 70.1 bits (170), Expect = 8.310e-10
Identity = 45/152 (29.61%), Postives = 79/152 (51.97%), Query Frame = 3 
Query:  231 LLVAPACTLRAGEIDDISLLLSQSCSSFGKVYGTDQAPYLSILHKSPARGIDGAVA-AQVSDREVMDAVFLYIQQALLGYSDDNEEDFVKLGRQLLTVERHTVTPAASEAAFFEAFWSTAADVAQFTTESSVMLVAPGFAERPDDFSRLLET 683
            + VAP C     + DD++  L  +C  F  +   + AP      K          A + VS+++VM+ V  + Q  ++ Y  DNEEDFV++GR LL+V+R+TVTPA  +    +AFW   A + +    +++M+ +    +  + F + ++T
Sbjct:  104 VFVAPNCKSAGSKFDDMAKHLKSACG-FSDLSVLESAPQPCFTFKRQLGPTSSQAARSTVSEQQVMNRVLDWFQNLMI-YHIDNEEDFVEIGRILLSVKRYTVTPAEHQFELQQAFWKEVATLVEGGEGNTMMIASNFMLDDAEGFEKFVQT 253
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BLAST of mRNA_P-wetherbeei_contig1867.2.1 vs. uniprot
Match: A0A7S0ETR1_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0ETR1_9CRYP)

HSP 1 Score: 66.2 bits (160), Expect = 1.630e-8
Identity = 59/218 (27.06%), Postives = 102/218 (46.79%), Query Frame = 3 
Query:   63 RQTTRMSAVSLE---QTVRDWIASSSIDEMTSVTVTETTNVMNLVSAYFGSTTTARTDTLLVAPACTLRAGEIDDISLLLSQSCSSFGKVYGTDQAPYLSILHKSPARGIDG-AVAAQVSDREVMDAVFLYIQQALLGYSDDNEEDFVKLGRQLLTVERHTVTPAASEAAFFEAFWSTAADVAQFTTESSVMLVAPGF-AERPDDFSRLLETGGGSPL 701
            R + RM+++  E   Q VRDW  +    E           VM+   +   S     +  + VAP C     ++  ++  L  +C  F  +   + AP      K         +V + +S+++VM+ V  + Q  ++ Y  DNEEDFV++GR LL+V+R+TVTPA  +    +AFW   + + +   + + M+VA  F  + P+ F + +      PL
Sbjct:   48 RTSLRMASILPEKAIQAVRDWNGAPKESEYVCAASKTDAAVMSEFFSQSMSGGKKDSQVVFVAPNCKSSGSKLQQMADHLKSACG-FSDLNVLENAPQPCFTFKRQLGSKSSQSVQSTISEQQVMNKVLDWFQNLMI-YHIDNEEDFVEIGRILLSVKRYTVTPAEHQFELQQAFWKEVSTLVE-GGDGNTMIVASNFMVDDPEGFEQFVSKQLSDPL 262
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1867.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5K0A5_9PHAE1.790e-1640.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQR9_ECTSI1.980e-1638.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6V2RZP2_HETAK4.260e-1328.91Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
L1J969_GUITC8.310e-1029.61Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A7S0ETR1_9CRYP1.630e-827.06Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1867contigP-wetherbeei_contig1867:2946..4239 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FQR9
Model size1024
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.67e-18
EggNOG OGs2BYI4@1|root,2T1A7@2759|Eukaryota
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_000270.1
Cds size900
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186152.009215-UTR-P-wetherbeei_contig1867:2945..30251683186152.009215-UTR-P-wetherbeei_contig1867:2945..3025Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1867 2946..3025 -
1683186152.0340781-UTR-P-wetherbeei_contig1867:4195..42391683186152.0340781-UTR-P-wetherbeei_contig1867:4195..4239Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1867 4196..4239 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186152.0187156-CDS-P-wetherbeei_contig1867:3025..35641683186152.0187156-CDS-P-wetherbeei_contig1867:3025..3564Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1867 3026..3564 -
1683186152.0266917-CDS-P-wetherbeei_contig1867:3834..41951683186152.0266917-CDS-P-wetherbeei_contig1867:3834..4195Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1867 3835..4195 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1867.2.1prot_P-wetherbeei_contig1867.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1867 3026..4195 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1867.2.1

>prot_P-wetherbeei_contig1867.2.1 ID=prot_P-wetherbeei_contig1867.2.1|Name=mRNA_P-wetherbeei_contig1867.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=300bp
MARFWGRQTTRMSAVSLEQTVRDWIASSSIDEMTSVTVTETTNVMNLVSA
YFGSTTTARTDTLLVAPACTLRAGEIDDISLLLSQSCSSFGKVYGTDQAP
YLSILHKSPARGIDGAVAAQVSDREVMDAVFLYIQQALLGYSDDNEEDFV
KLGRQLLTVERHTVTPAASEAAFFEAFWSTAADVAQFTTESSVMLVAPGF
AERPDDFSRLLETGGGSPLGRLLASAGAASVSATAFAGGGLRYPFVIVSP
PIEEIVAPEDGYKVITSAGEVDVEEYIRRKEEEEKEAAEKKDDQEGKWV*
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mRNA from alignment at P-wetherbeei_contig1867:2946..4239-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1867.2.1 ID=mRNA_P-wetherbeei_contig1867.2.1|Name=mRNA_P-wetherbeei_contig1867.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1294bp|location=Sequence derived from alignment at P-wetherbeei_contig1867:2946..4239- (Phaeothamnion wetherbeei SAG_119_79)
CTGGATATTTGCGTCCATCAGCGTCGAAACGCGCCGCTGGGACGATGGCC
CGGTTCTGGGGACGACAAACTACCCGTATGTCCGCTGTTTCATTAGAGCA
GACCGTCCGTGACTGGATTGCTTCCTCGTCCATCGACGAAATGACTTCTG
TCACTGTTACCGAGACGACGAACGTCATGAACCTCGTCTCGGCATACTTT
GGCTCGACAACAACCGCCCGAACCGATACATTGCTAGTAGCACCTGCCTG
CACGCTGCGAGCTGGCGAAATAGACGATATTTCGCTACTGCTTTCTCAGA
GCTGCAGCTCGTTTGGGAAGGTGTATGGGACGGACCAAGCACCGTATCTG
TCAATCCTACACAAGTCGCCTGCCCGAGGAATCGATGGTGCAGTCGCAGC
TCAAGGCAAGTGGAGTACTGTTTTCAGTTGCATTACATATTCCATCGTAA
CAGATGCGCATCCACCCTGTCTTTAACATTACACGTAAATGAAGACGCAC
AGTTCTCAGCTGTTGTCCCTCTTACTAGAACGGAAGATGCTCGTTGCGTC
AAACTTGTCTCGCATTCGTGCGAATGAATAAAACTCTTAAGTCAATCAAA
TCGTCGCCTTTTTCTTTCCCTCAATCTGTGCTTCTTCCTGTTTCTTCGTG
GCTGCCGTCTCCTTGTGCGCCGCAGTATCGGACCGAGAGGTGATGGACGC
GGTGTTCCTCTACATCCAGCAGGCCCTCCTCGGCTACTCCGACGACAACG
AAGAGGACTTTGTCAAGCTCGGCCGCCAGCTCCTCACTGTGGAGCGGCAC
ACGGTGACGCCAGCCGCCTCGGAAGCGGCGTTCTTCGAGGCCTTCTGGTC
GACCGCTGCCGACGTCGCGCAGTTTACGACGGAGAGCAGCGTGATGCTCG
TTGCTCCGGGATTTGCAGAGCGCCCTGACGACTTTTCACGGTTGCTGGAG
ACTGGTGGCGGCTCGCCGCTCGGCCGCCTGCTGGCGTCGGCAGGCGCGGC
TTCGGTGTCGGCGACGGCGTTCGCAGGCGGCGGGCTGCGGTACCCGTTTG
TGATAGTGTCGCCTCCGATCGAGGAGATTGTGGCGCCCGAGGATGGCTAC
AAGGTGATCACCAGTGCCGGGGAGGTGGATGTGGAAGAATATATCAGAAG
GAAGGAGGAGGAGGAGAAGGAGGCGGCGGAAAAGAAGGACGATCAGGAGG
GGAAGTGGGTTTGAGACGTGCTTGTTCTGCTTCGCGTAGCGCCTTGCCGG
GCTGTGATAAGGCCGGTCCTTTAATAAAAAGTTATCTACTTTTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1867:2946..4239-

>mRNA_P-wetherbeei_contig1867.2.1 ID=mRNA_P-wetherbeei_contig1867.2.1|Name=mRNA_P-wetherbeei_contig1867.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=900bp|location=Sequence derived from alignment at P-wetherbeei_contig1867:2946..4239- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCCGGTTCTGGGGACGACAAACTACCCGTATGTCCGCTGTTTCATT
AGAGCAGACCGTCCGTGACTGGATTGCTTCCTCGTCCATCGACGAAATGA
CTTCTGTCACTGTTACCGAGACGACGAACGTCATGAACCTCGTCTCGGCA
TACTTTGGCTCGACAACAACCGCCCGAACCGATACATTGCTAGTAGCACC
TGCCTGCACGCTGCGAGCTGGCGAAATAGACGATATTTCGCTACTGCTTT
CTCAGAGCTGCAGCTCGTTTGGGAAGGTGTATGGGACGGACCAAGCACCG
TATCTGTCAATCCTACACAAGTCGCCTGCCCGAGGAATCGATGGTGCAGT
CGCAGCTCAAGTATCGGACCGAGAGGTGATGGACGCGGTGTTCCTCTACA
TCCAGCAGGCCCTCCTCGGCTACTCCGACGACAACGAAGAGGACTTTGTC
AAGCTCGGCCGCCAGCTCCTCACTGTGGAGCGGCACACGGTGACGCCAGC
CGCCTCGGAAGCGGCGTTCTTCGAGGCCTTCTGGTCGACCGCTGCCGACG
TCGCGCAGTTTACGACGGAGAGCAGCGTGATGCTCGTTGCTCCGGGATTT
GCAGAGCGCCCTGACGACTTTTCACGGTTGCTGGAGACTGGTGGCGGCTC
GCCGCTCGGCCGCCTGCTGGCGTCGGCAGGCGCGGCTTCGGTGTCGGCGA
CGGCGTTCGCAGGCGGCGGGCTGCGGTACCCGTTTGTGATAGTGTCGCCT
CCGATCGAGGAGATTGTGGCGCCCGAGGATGGCTACAAGGTGATCACCAG
TGCCGGGGAGGTGGATGTGGAAGAATATATCAGAAGGAAGGAGGAGGAGG
AGAAGGAGGCGGCGGAAAAGAAGGACGATCAGGAGGGGAAGTGGGTTTGA
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