mRNA_P-wetherbeei_contig18658.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18658.1.1
Unique NamemRNA_P-wetherbeei_contig18658.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig18658.1.1 vs. uniprot
Match: W2I1X8_PHYPR (Uncharacterized protein n=10 Tax=Phytophthora TaxID=4783 RepID=W2I1X8_PHYPR)

HSP 1 Score: 77.4 bits (189), Expect = 5.500e-15
Identity = 38/81 (46.91%), Postives = 49/81 (60.49%), Query Frame = 3
Query:   24 MVFAGQDAWRSHPIISGCARRPFPGLGTAAAIFGVYVVADFIYGVATRP-------PPRELPERASYDYVKSGVGKMPTLE 245
            MV A QDAWRSHP ISGCA++PF GLG A+AIFGVY+V D I    +         P  +   R  + Y +S +G+ P L+
Sbjct:    1 MVLAHQDAWRSHPFISGCAKKPFTGLGLASAIFGVYLVVDTINSRFSSKGKEGGAHPELDYVPRGKFQYERSEIGEAPALK 81          
BLAST of mRNA_P-wetherbeei_contig18658.1.1 vs. uniprot
Match: A0A6A3NMB4_9STRA (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3NMB4_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 6.380e-15
Identity = 41/84 (48.81%), Postives = 51/84 (60.71%), Query Frame = 3
Query:   24 MVFAGQDAWRSHPIISGCARRPFPGLGTAAAIFGVYVVADFIYGVATR----------PPPRELPERASYDYVKSGVGKMPTLE 245
            MV A QDAWRSHP ISGCA++PF GLG A+AIFGVY+V D I    TR           P  +   R  + Y +S VG+ P+L+
Sbjct:   32 MVLAHQDAWRSHPFISGCAKKPFTGLGLASAIFGVYLVVDTI---TTRFSSHGKEGGAHPEMDYVPRGKFQYERSEVGEAPSLK 112          
BLAST of mRNA_P-wetherbeei_contig18658.1.1 vs. uniprot
Match: K3WAK3_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WAK3_GLOUD)

HSP 1 Score: 75.9 bits (185), Expect = 2.120e-14
Identity = 38/80 (47.50%), Postives = 49/80 (61.25%), Query Frame = 3
Query:   24 MVFAGQDAWRSHPIISGCARRPFPGLGTAAAIFGVYVVADFIYGVATRPPPREL-----PERAS-YDYVKSGVGKMPTLE 245
            MV A QDAWR HP ISGCA++PFPGLG A+AIFG Y+V D + G ++            P  AS   Y +  +G+ PTL+
Sbjct:    1 MVLAHQDAWRKHPFISGCAKKPFPGLGIASAIFGAYLVVDLVAGGSSSAHGASSHGDHHPTSASKVKYSRDEIGERPTLQ 80          
BLAST of mRNA_P-wetherbeei_contig18658.1.1 vs. uniprot
Match: W4GNJ0_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GNJ0_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 2.440e-14
Identity = 34/75 (45.33%), Postives = 43/75 (57.33%), Query Frame = 3
Query:   24 MVFAGQDAWRSHPIISGCARRPFPGLGTAAAIFGVYVVADFIYGVATRPPPRELPERASYDYVKSGVGKMPTLEG 248
            MV AGQDAWRSHP ++GC ++P PG G AA IF VY+  D I  +  +         A   YVK  +G+ P  EG
Sbjct:   25 MVLAGQDAWRSHPFLTGCIKKPIPGFGIAAGIFAVYLTVDTISNLGNKNSHSSHGHSAPAVYVKEEIGERPRYEG 99          
BLAST of mRNA_P-wetherbeei_contig18658.1.1 vs. uniprot
Match: A0A833SSC4_PHYIN (Uncharacterized protein n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833SSC4_PHYIN)

HSP 1 Score: 75.5 bits (184), Expect = 6.530e-14
Identity = 37/81 (45.68%), Postives = 47/81 (58.02%), Query Frame = 3
Query:   24 MVFAGQDAWRSHPIISGCARRPFPGLGTAAAIFGVYVVADFI-------YGVATRPPPRELPERASYDYVKSGVGKMPTLE 245
            MV A QDAWRSHP IS CA++PF GLG A+AIFGVY+V D I              P  +   R  + Y +  VG+ P+L+
Sbjct:   31 MVLAHQDAWRSHPFISNCAKKPFTGLGLASAIFGVYLVVDTINSRLSSKVNAGGAHPEMDYVPRGKFQYERGEVGEAPSLK 111          
BLAST of mRNA_P-wetherbeei_contig18658.1.1 vs. uniprot
Match: A0A2D4BKS1_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BKS1_PYTIN)

HSP 1 Score: 74.3 bits (181), Expect = 8.350e-14
Identity = 37/80 (46.25%), Postives = 48/80 (60.00%), Query Frame = 3
Query:   24 MVFAGQDAWRSHPIISGCARRPFPGLGTAAAIFGVYVVADFIYGVATRPPPRELPER-------ASYDYVKSGVGKMPTL 242
            MV A QDAWR HP I+GCA++PF GLGTA+AIFGVY+V D I   ++                 + Y +V+  VG+ PTL
Sbjct:    1 MVLAHQDAWRKHPFITGCAKKPFTGLGTASAIFGVYLVFDAITSSSSSSHXXXXXXXXXXXXXPSKYKFVREEVGERPTL 80          
BLAST of mRNA_P-wetherbeei_contig18658.1.1 vs. uniprot
Match: A0A024TWK1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TWK1_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 9.470e-14
Identity = 34/74 (45.95%), Postives = 43/74 (58.11%), Query Frame = 3
Query:   24 MVFAGQDAWRSHPIISGCARRPFPGLGTAAAIFGVYVVADFIYGVATRPPPRELPERASYDYVKSGVGKMPTLE 245
            MV AGQDAWRSHP ++GC ++P PG G AA IF VY+  D I  +  +         A   YVK  +G+ P LE
Sbjct:    1 MVLAGQDAWRSHPFLTGCIKKPVPGFGMAAGIFAVYLTVDTIANLGNKTSHSHA-HHAPVVYVKEEIGERPRLE 73          
BLAST of mRNA_P-wetherbeei_contig18658.1.1 vs. uniprot
Match: A0A662XPS6_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XPS6_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 1.020e-13
Identity = 35/76 (46.05%), Postives = 47/76 (61.84%), Query Frame = 3
Query:   24 MVFAGQDAWRSHPIISGCARRPFPGLGTAAAIFGVYVVADFIYGVATRPPPRELPE---RASYDYVKSGVGKMPTL 242
            MV A QDAWR HP I+GC ++PF GLG A+AIFGVY+V D I   ++   P    +   R  + + +S VG+ P L
Sbjct:    1 MVLAHQDAWRKHPFITGCGKKPFTGLGMASAIFGVYLVVDLITSRSSPHDPHPQMDYIPRGKFKFERSEVGEPPAL 76          
BLAST of mRNA_P-wetherbeei_contig18658.1.1 vs. uniprot
Match: G4YP24_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YP24_PHYSP)

HSP 1 Score: 73.6 bits (179), Expect = 3.140e-13
Identity = 38/84 (45.24%), Postives = 49/84 (58.33%), Query Frame = 3
Query:   24 MVFAGQDAWRSHPIISGCARRPFPGLGTAAAIFGVYVVADFIYGVATR----------PPPRELPERASYDYVKSGVGKMPTLE 245
            MV A QDAWRSHP IS CA++PF GLG A+AIFGVY+V D I    TR           P  +   R  + Y ++ +G+ P L+
Sbjct:   27 MVLAHQDAWRSHPFISNCAKKPFTGLGLASAIFGVYLVVDTI---TTRFSSHGKEGGAHPEMDYVPRGKFQYERNEIGEAPELK 107          
BLAST of mRNA_P-wetherbeei_contig18658.1.1 vs. uniprot
Match: A0A3R7G059_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7G059_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 3.300e-13
Identity = 39/86 (45.35%), Postives = 49/86 (56.98%), Query Frame = 3
Query:   24 MVFAGQDAWRSHPIISGCARRPFPGLGTAAAIFGVYVVADFIYGVATRPPPRELPERASYDYVKSG--------VGKMPTLEGDNE 257
            MV A QDAWRSHP IS CA++PF GLG A+AIFGVY+  D I     +  P E       DYV  G        VG+ P+L+ + +
Sbjct:    1 MVLAHQDAWRSHPFISNCAKKPFTGLGLASAIFGVYLAVDTINN-RFKSHPDEHSTHPEMDYVPGGKFKYERNEVGEAPSLQHNEQ 85          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18658.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
W2I1X8_PHYPR5.500e-1546.91Uncharacterized protein n=10 Tax=Phytophthora TaxI... [more]
A0A6A3NMB4_9STRA6.380e-1548.81Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]
K3WAK3_GLOUD2.120e-1447.50Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
W4GNJ0_9STRA2.440e-1445.33Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]
A0A833SSC4_PHYIN6.530e-1445.68Uncharacterized protein n=1 Tax=Phytophthora infes... [more]
A0A2D4BKS1_PYTIN8.350e-1446.25Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A024TWK1_9STRA9.470e-1445.95Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A662XPS6_9STRA1.020e-1346.05Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
G4YP24_PHYSP3.140e-1345.24Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
A0A3R7G059_9STRA3.300e-1345.35Uncharacterized protein n=2 Tax=Phytophthora kerno... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18658contigP-wetherbeei_contig18658:63..1064 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog36331.EPrPI00000019880
PFAMsNDUF_B12
Model size729
Max annot lvl121069|Pythiales
Hectar predicted targeting categorysignal anchor
Exons2
Evalue7.92e-18
EggNOG OGs2E7JH@1|root,2SE52@2759|Eukaryota,1MI68@121069|Pythiales
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-08_000750.1
Descriptionfunction. Source PGD
Cds size237
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186151.7416801-UTR-P-wetherbeei_contig18658:62..5311683186151.7416801-UTR-P-wetherbeei_contig18658:62..531Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig18658 63..531 -
1683186151.7694528-UTR-P-wetherbeei_contig18658:1041..10641683186151.7694528-UTR-P-wetherbeei_contig18658:1041..1064Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig18658 1042..1064 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186151.7531602-CDS-P-wetherbeei_contig18658:531..6201683186151.7531602-CDS-P-wetherbeei_contig18658:531..620Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18658 532..620 -
1683186151.7609508-CDS-P-wetherbeei_contig18658:893..10411683186151.7609508-CDS-P-wetherbeei_contig18658:893..1041Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18658 894..1041 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18658.1.1prot_P-wetherbeei_contig18658.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18658 532..1041 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18658.1.1

>prot_P-wetherbeei_contig18658.1.1 ID=prot_P-wetherbeei_contig18658.1.1|Name=mRNA_P-wetherbeei_contig18658.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=79bp
MVFAGQDAWRSHPIISGCARRPFPGLGTAAAIFGVYVVADFIYGVATRPP
PRELPERASYDYVKSGVGKMPTLEGDNE*
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mRNA from alignment at P-wetherbeei_contig18658:63..1064-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18658.1.1 ID=mRNA_P-wetherbeei_contig18658.1.1|Name=mRNA_P-wetherbeei_contig18658.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1002bp|location=Sequence derived from alignment at P-wetherbeei_contig18658:63..1064- (Phaeothamnion wetherbeei SAG_119_79)
GAGCGAAAAAAGAGGAAACCAAGATGGTCTTTGCGGGACAAGACGCCTGG CGCAGCCACCCTATCATCTCTGGCTGCGCACGAAGGCCATTTCCAGGACT AGGCACAGCGGCTGCCATCTTTGGCGTGTACGTAGTTGCGGACTTTATTT ACGGAGTCGCGACCCGCCCACGTGAGTTCCCTCAGCATGCTTTCTCTTTC ACGATTGATTGCATCTTTTCCGAGGGATTAATTCGCGTTTTGGCTGGCTG GATGGCGTTCAGAAATGACAAGAACTGGTTTTGGAGCCATCCTTTGGGGG GCTTGCCCTCGTTCTGTGTATGATCTCTCTGTCCCGGCTGGCGTCGACCC CTAGTCGCACCGAGGCAAGCACTTCTTTCCATTTTCGTTACGCGAGAGGA ATGAACTTCTCTTGTCTCGTGATTCCCTTCTACTTTTCCTGCAGCACCAC GGGAGCTCCCAGAAAGGGCATCGTACGACTACGTCAAGTCGGGCGTCGGG AAGATGCCGACCCTGGAAGGAGACAACGAATAGATGTTGAGGCAATCTGC CTGCCGCCACAGGATCTTTGGGCCGGTGGGAGAGTGAACTCGTTGTCAAG AACAGATGACGAGTCTGGGAGATAGGAGCGGTCCAACTTTGACCTGGCGT CAACTTTCGCTGCAAGGAGCTTCATGCTCCGCGACAATAGCCTGTCTCTG CGAGCTGGTCCTTTTCGGAACCGCGAGATGGTTTGCTCGGCGGCTGAGAC ATGGCACTGACAGCAGGGGCGGCGGCGTTGATGGCGACAGTGGCTGGAGC GTGACGGAGGTCTACAGACGGAGCAGCGACCTTCGCGACGGCACCGCGGC CTCGTCCGCCGTTGATGGGCCGTGTTCCTTCGGCGAATCGGGTGGGGTAA CATACTGCTACCCGACCACAGCCGCTTTTCGCCAGAGAACTTTTGGGATA GCATGAGAATAAACCATGAACTACCTCTGGACTCCTGTTCTCGTAAGCAG CC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18658:63..1064-

>mRNA_P-wetherbeei_contig18658.1.1 ID=mRNA_P-wetherbeei_contig18658.1.1|Name=mRNA_P-wetherbeei_contig18658.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=237bp|location=Sequence derived from alignment at P-wetherbeei_contig18658:63..1064- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTCTTTGCGGGACAAGACGCCTGGCGCAGCCACCCTATCATCTCTGG
CTGCGCACGAAGGCCATTTCCAGGACTAGGCACAGCGGCTGCCATCTTTG
GCGTGTACGTAGTTGCGGACTTTATTTACGGAGTCGCGACCCGCCCACCA
CCACGGGAGCTCCCAGAAAGGGCATCGTACGACTACGTCAAGTCGGGCGT
CGGGAAGATGCCGACCCTGGAAGGAGACAACGAATAG
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