mRNA_P-wetherbeei_contig18626.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18626.1.1
Unique NamemRNA_P-wetherbeei_contig18626.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig18626.1.1 vs. uniprot
Match: UPI001932C669 (SlyX family protein n=1 Tax=Steroidobacter gossypii TaxID=2805490 RepID=UPI001932C669)

HSP 1 Score: 56.6 bits (135), Expect = 2.270e-9
Identity = 28/50 (56.00%), Postives = 40/50 (80.00%), Query Frame = 1
Query:    1 MSDSALERIELKIAYLESANQELSDIVYRQQRELDHLRTQMSTCQRQLEA 150
            M+D  +ERIELKIAYLE AN +LS++VYRQQ+++D LR ++S    ++EA
Sbjct:    1 MNDEVVERIELKIAYLERANNDLSEVVYRQQQQIDALRAELSVLNGKMEA 50          
BLAST of mRNA_P-wetherbeei_contig18626.1.1 vs. uniprot
Match: A0A841HR32_9GAMM (Putative coiled-coil protein SlyX n=1 Tax=Povalibacter uvarum TaxID=732238 RepID=A0A841HR32_9GAMM)

HSP 1 Score: 55.5 bits (132), Expect = 6.500e-9
Identity = 28/54 (51.85%), Postives = 40/54 (74.07%), Query Frame = 1
Query:    1 MSDSALERIELKIAYLESANQELSDIVYRQQRELDHLRTQMSTCQRQLEAWRSE 162
            M+D  +ER+ELK+A+LE ANQELSD++YRQQ+E+D LR        +++A R E
Sbjct:    1 MNDDVVERLELKLAFLERANQELSDVIYRQQQEIDALRQHFKELLERVDASREE 54          
BLAST of mRNA_P-wetherbeei_contig18626.1.1 vs. uniprot
Match: A0A829YEK3_9GAMM (Uncharacterized protein n=5 Tax=Steroidobacter TaxID=469322 RepID=A0A829YEK3_9GAMM)

HSP 1 Score: 55.1 bits (131), Expect = 1.060e-8
Identity = 29/55 (52.73%), Postives = 42/55 (76.36%), Query Frame = 1
Query:    1 MSDSALERIELKIAYLESANQELSDIVYRQQRELDHLRTQMSTCQRQLEAWRSEQ 165
            M+   +ERIELKIAYLE AN +LS++VYRQQ+E+D LR +++    ++EA  +EQ
Sbjct:    7 MNAEFIERIELKIAYLERANNDLSEVVYRQQQEIDALRAELAALNGKMEATMTEQ 61          
BLAST of mRNA_P-wetherbeei_contig18626.1.1 vs. uniprot
Match: A0A127F7V3_STEDE (Uncharacterized protein n=2 Tax=Steroidobacter denitrificans TaxID=465721 RepID=A0A127F7V3_STEDE)

HSP 1 Score: 52.8 bits (125), Expect = 6.720e-8
Identity = 29/49 (59.18%), Postives = 37/49 (75.51%), Query Frame = 1
Query:   16 LERIELKIAYLESANQELSDIVYRQQRELDHLRTQMSTCQRQLEAWRSE 162
            +E IE KIA+LE AN ELSD+VYRQQ+EL+ LR ++S    QLE+ R E
Sbjct:    1 MEHIESKIAFLERANMELSDVVYRQQQELEELRMRLSLLATQLESLRGE 49          
BLAST of mRNA_P-wetherbeei_contig18626.1.1 vs. uniprot
Match: A0A7C2JTY2_9GAMM (SlyX family protein (Fragment) n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A7C2JTY2_9GAMM)

HSP 1 Score: 53.1 bits (126), Expect = 1.730e-7
Identity = 27/50 (54.00%), Postives = 41/50 (82.00%), Query Frame = 1
Query:   10 SALERIELKIAYLESANQELSDIVYRQQRELDHLRTQMSTCQRQLEAWRS 159
            +++E+IE+KIAYLE AN ELSD+VYRQ REL+ L  Q++   R+L+A+++
Sbjct:   58 TSIEQIEIKIAYLEQANAELSDVVYRQGRELESLHAQLAELLRRLDAFQT 107          
BLAST of mRNA_P-wetherbeei_contig18626.1.1 vs. uniprot
Match: A0A7X7PXL3_9GAMM (SlyX family protein n=1 Tax=Xanthomonadaceae bacterium TaxID=1926873 RepID=A0A7X7PXL3_9GAMM)

HSP 1 Score: 51.6 bits (122), Expect = 2.210e-7
Identity = 28/49 (57.14%), Postives = 38/49 (77.55%), Query Frame = 1
Query:   16 LERIELKIAYLESANQELSDIVYRQQRELDHLRTQMSTCQRQLEAWRSE 162
            LER+ELKIAYLE AN ELSD+VYRQQRE+  L+ + +  + + EA +S+
Sbjct:    7 LERLELKIAYLERANTELSDVVYRQQREIADLQERFAALRDRFEALKSQ 55          
BLAST of mRNA_P-wetherbeei_contig18626.1.1 vs. uniprot
Match: UPI0019936020 (SlyX family protein n=1 Tax=Candidatus Obscuribacterales bacterium TaxID=2364082 RepID=UPI0019936020)

HSP 1 Score: 50.4 bits (119), Expect = 6.040e-7
Identity = 29/41 (70.73%), Postives = 36/41 (87.80%), Query Frame = 1
Query:    1 MSDSALERIELKIAYLESANQELSDIVYRQQRELDHLRTQM 123
            MSD A+ERIELKIA+LE+AN ELSD+VYRQQ+EL  LR ++
Sbjct:    1 MSD-AIERIELKIAFLENANTELSDVVYRQQQELIALRERL 40          
BLAST of mRNA_P-wetherbeei_contig18626.1.1 vs. uniprot
Match: UPI00140A1987 (SlyX family protein n=1 Tax=Thioalkalivibrio sp. XN279 TaxID=2714953 RepID=UPI00140A1987)

HSP 1 Score: 48.1 bits (113), Expect = 5.170e-6
Identity = 23/48 (47.92%), Postives = 35/48 (72.92%), Query Frame = 1
Query:    7 DSALERIELKIAYLESANQELSDIVYRQQRELDHLRTQMSTCQRQLEA 150
            D   + +ELK+AYLE ANQELSD++YRQQ+ +D L  +++    +L+A
Sbjct:    4 DPRFDELELKLAYLERANQELSDVIYRQQQSIDQLEARLARLADRLQA 51          
BLAST of mRNA_P-wetherbeei_contig18626.1.1 vs. uniprot
Match: UPI0013EC6AEF (SlyX family protein n=1 Tax=Thioalkalivibrio sp. XN8 TaxID=2712863 RepID=UPI0013EC6AEF)

HSP 1 Score: 46.2 bits (108), Expect = 3.250e-5
Identity = 24/45 (53.33%), Postives = 36/45 (80.00%), Query Frame = 1
Query:   16 LERIELKIAYLESANQELSDIVYRQQRELDHLRTQMSTCQRQLEA 150
            LE IELK+AYLE +NQELSD++Y QQ+ +D L+++++    +LEA
Sbjct:   11 LEDIELKLAYLERSNQELSDVMYAQQQVIDRLQSRLARLADRLEA 55          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18626.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
UPI001932C6692.270e-956.00SlyX family protein n=1 Tax=Steroidobacter gossypi... [more]
A0A841HR32_9GAMM6.500e-951.85Putative coiled-coil protein SlyX n=1 Tax=Povaliba... [more]
A0A829YEK3_9GAMM1.060e-852.73Uncharacterized protein n=5 Tax=Steroidobacter Tax... [more]
A0A127F7V3_STEDE6.720e-859.18Uncharacterized protein n=2 Tax=Steroidobacter den... [more]
A0A7C2JTY2_9GAMM1.730e-754.00SlyX family protein (Fragment) n=1 Tax=Gammaproteo... [more]
A0A7X7PXL3_9GAMM2.210e-757.14SlyX family protein n=1 Tax=Xanthomonadaceae bacte... [more]
UPI00199360206.040e-770.73SlyX family protein n=1 Tax=Candidatus Obscuribact... [more]
UPI00140A19875.170e-647.92SlyX family protein n=1 Tax=Thioalkalivibrio sp. X... [more]
UPI0013EC6AEF3.250e-553.33SlyX family protein n=1 Tax=Thioalkalivibrio sp. X... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18626contigP-wetherbeei_contig18626:2..166 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size165
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size165
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186151.1318636-CDS-P-wetherbeei_contig18626:1..1661683186151.1318636-CDS-P-wetherbeei_contig18626:1..166Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18626 2..166 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18626.1.1prot_P-wetherbeei_contig18626.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18626 2..166 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18626.1.1

>prot_P-wetherbeei_contig18626.1.1 ID=prot_P-wetherbeei_contig18626.1.1|Name=mRNA_P-wetherbeei_contig18626.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=55bp
MSDSALERIELKIAYLESANQELSDIVYRQQRELDHLRTQMSTCQRQLEA
WRSEQ
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mRNA from alignment at P-wetherbeei_contig18626:2..166-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18626.1.1 ID=mRNA_P-wetherbeei_contig18626.1.1|Name=mRNA_P-wetherbeei_contig18626.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=165bp|location=Sequence derived from alignment at P-wetherbeei_contig18626:2..166- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGTGATTCGGCGCTCGAGCGTATCGAACTCAAGATTGCCTACCTGGA AAGCGCCAACCAGGAGTTGAGCGATATTGTCTATCGCCAGCAGCGCGAGC TGGATCATCTGCGTACCCAGATGTCGACCTGTCAGCGTCAGCTCGAGGCT TGGCGTTCCGAGCAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18626:2..166-

>mRNA_P-wetherbeei_contig18626.1.1 ID=mRNA_P-wetherbeei_contig18626.1.1|Name=mRNA_P-wetherbeei_contig18626.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=165bp|location=Sequence derived from alignment at P-wetherbeei_contig18626:2..166- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGTGATTCGGCGCTCGAGCGTATCGAACTCAAGATTGCCTACCTGGA
AAGCGCCAACCAGGAGTTGAGCGATATTGTCTATCGCCAGCAGCGCGAGC
TGGATCATCTGCGTACCCAGATGTCGACCTGTCAGCGTCAGCTCGAGGCT
TGGCGTTCCGAGCAG
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