mRNA_P-wetherbeei_contig18624.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18624.1.1
Unique NamemRNA_P-wetherbeei_contig18624.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig18624.1.1 vs. uniprot
Match: A0A3N5JYE1_9BACT (Uncharacterized protein n=1 Tax=Calditrichaeota bacterium TaxID=2212469 RepID=A0A3N5JYE1_9BACT)

HSP 1 Score: 61.6 bits (148), Expect = 2.500e-9
Identity = 43/146 (29.45%), Postives = 72/146 (49.32%), Query Frame = 1
Query:    7 PTYEFNDEQNATFHALASYMKVAGFLLVAFGGLQLILVTLVSMNMMAVTRGEGHPFGSLALVQMILSLAITAVYGYMGAWTRKSGHDFQQVVDTHGSDITHLMDALSELRISYN---WIYLGLFVSLGLMLIWILFGGFLASSINQ 435
            P +EF+ +QN+TF +LA  MK+     +  G L           M    +G            ++  +   AV+ ++G WT  +G  F+++VDT GSDI+HLM AL  L+  Y    W+ +   +++ L+LI  L GG + + +  
Sbjct:    4 PPFEFSTQQNSTFGSLAGKMKLVSIFFIVIGVLS---------AMSNWVQGS-----------IVAGVINAAVFIFIGIWTLDAGRAFRRIVDTQGSDISHLMSALVNLKRLYTLQFWLLIITMIAV-LVLIGFLLGGSMGARLQD 128          
BLAST of mRNA_P-wetherbeei_contig18624.1.1 vs. uniprot
Match: A0A1F9LWX6_9DELT (Uncharacterized protein n=6 Tax=unclassified Deltaproteobacteria TaxID=122706 RepID=A0A1F9LWX6_9DELT)

HSP 1 Score: 59.3 bits (142), Expect = 1.950e-8
Identity = 43/131 (32.82%), Postives = 63/131 (48.09%), Query Frame = 1
Query:    1 EKPTYEFNDEQNATFHALASYMKVAGFLLVAFGGLQLILVTLVSMNMMAVTRGEGHPFGSLALVQMILSLAITAVYGYMGAWTRKSGHDFQQVVDTHGSDITHLMDALSELRISYNWIYLGLFVSLGLMLI 393
            E P YEF D QN T   LAS MK  G   VA G    +   L+ +  +  T G         +V+ ++ + +  ++   G WT  +   F  +V T GSDI +LM+AL  LR  Y   +  + +SL  +LI
Sbjct:    2 ESPNYEFTDSQNQTVSQLASRMKWVGIFFVALG----LAFGLLGVAGLVATEGAVD-----LIVKPMILVMVAVIFFLSGIWTVNAARLFTLIVQTTGSDILNLMNALGTLRKLYYMQFWLIIISLVALLI 123          
BLAST of mRNA_P-wetherbeei_contig18624.1.1 vs. uniprot
Match: A0A661D8T3_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A661D8T3_9GAMM)

HSP 1 Score: 58.5 bits (140), Expect = 3.760e-8
Identity = 36/111 (32.43%), Postives = 57/111 (51.35%), Query Frame = 1
Query:    4 KPTYEFNDEQNATFHALASYMKVAGFLLVAFGGLQLILVTLVSMNMMAVTRGEGHPFGSLALVQMILSLAITAVYGYMGAWTRKSGHDFQQVVDTHGSDITHLMDALSELR 336
            +P YEFN+ QN     L+  MK     L+  G LQ +   L  ++  +V+           LV+ ++      +Y ++G W   + + FQQVVDT G+DI H+M AL +L+
Sbjct:    3 EPQYEFNEPQNQIISGLSQKMKFVSIFLIVVGLLQALGGVLSMVSAQSVS----------GLVEGLIG---GIIYIFVGVWGAGAANSFQQVVDTEGNDIDHMMSALGDLK 100          
BLAST of mRNA_P-wetherbeei_contig18624.1.1 vs. uniprot
Match: A0A4V0I8A9_9BACT (Uncharacterized protein n=1 Tax=Gemmataceae bacterium TaxID=2052164 RepID=A0A4V0I8A9_9BACT)

HSP 1 Score: 58.2 bits (139), Expect = 6.930e-8
Identity = 38/112 (33.93%), Postives = 55/112 (49.11%), Query Frame = 1
Query:   13 YEFNDEQNATFHALASYMKVAGFLLVAFGGLQLILVTLVSMNMMAVTRGEGHPFGSLALVQMILSLAITAVYGYMGAWTRKSGHDFQQVVDTHGSDITHLMDALSELRISYN 348
            YEF+DE N  F ALA  M+V G L+   G   ++L  L   + + V  G G P G  A   + L +         G WT  +   F+++V+T   D+ HLM+AL +L   Y 
Sbjct:   18 YEFSDEHNKQFSALADAMQVVGGLMQLLGLAFVVLCGLSVTSAVQVGGGYGPPIGLGAAALLCLCI---------GFWTGGAAGSFRKIVETKNEDVWHLMNALGQLHNMYG 120          
BLAST of mRNA_P-wetherbeei_contig18624.1.1 vs. uniprot
Match: A0A496VD26_9GAMM (Uncharacterized protein n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A496VD26_9GAMM)

HSP 1 Score: 57.8 bits (138), Expect = 7.390e-8
Identity = 41/132 (31.06%), Postives = 63/132 (47.73%), Query Frame = 1
Query:   13 YEFNDEQNATFHALASYMKVAGFLLVAFGGLQLILVTLVSMNMMAVTRGEGHPFGSLALVQMILSLAITAVYGYMGAWTRKSGHDFQQVVDTHGSDITHLMDALSELRISYNWIYLGLFVSLGLMLIWILFG 408
            YEFNDEQN    +L+  MKV    ++    L ++   +     M+     G       LV  ++SL I       G W   +   FQ+VVDT G+DI H+MDA+  L     + Y  L + + ++L+ + FG
Sbjct:    5 YEFNDEQNQAIGSLSHKMKVVSVFMIVIAILSIVGAIIPMFKGMSSLAQLGPD-----LVGSLVSLLI-------GVWGLNAARSFQEVVDTKGNDIDHMMDAVGNLNKLVGFAYWLLMIFIFVLLLGVFFG 124          
BLAST of mRNA_P-wetherbeei_contig18624.1.1 vs. uniprot
Match: A0A7Z9G798_9DELT (Uncharacterized protein n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7Z9G798_9DELT)

HSP 1 Score: 56.6 bits (135), Expect = 1.990e-7
Identity = 33/112 (29.46%), Postives = 55/112 (49.11%), Query Frame = 1
Query:   13 YEFNDEQNATFHALASYMKVAGFLLVAFGGLQLILVTLVSMNMMAVTRGEGHPFGSLALVQMILSLAITAVYGYMGAWTRKSGHDFQQVVDTHGSDITHLMDALSELRISYN 348
            YEFN  +NA+F +LAS MK+   +L+  G + ++       N++    G     G               +Y  +G WT+ +    Q +V+T G+DI HLM+A+ +L   Y+
Sbjct:   15 YEFNSSENASFSSLASSMKIVAIILMILGAISVL-------NILTGDIGSALSGG---------------LYIVIGVWTKGAAQSIQNIVNTEGNDIDHLMNAVKDLNKLYS 104          
BLAST of mRNA_P-wetherbeei_contig18624.1.1 vs. uniprot
Match: A0A1U7CV25_9BACT (Uncharacterized protein n=1 Tax=Paludisphaera borealis TaxID=1387353 RepID=A0A1U7CV25_9BACT)

HSP 1 Score: 56.2 bits (134), Expect = 3.710e-7
Identity = 39/122 (31.97%), Postives = 60/122 (49.18%), Query Frame = 1
Query:   13 YEFNDEQNATFHALASYMKVAGFLLVAFGGLQLILVTLVSMNMMAVTRGEGHPFGSLALVQMILSLAITAVYGYMGAWTRKSGHDFQQVVDTHGSDITHLMDALSELRISYNWIYLGLFVSL 378
            YEF + +NA    L S M   G  ++  G     L  +VS    A+ R +      + L      L +T ++   G WT ++G +F +V  T GSD+ HLM AL+ L   Y+ +YL  F++L
Sbjct:   27 YEFRESENAVVGHLGSKMSFVGLFMLGIG-----LCFVVS----AIIRWQRREEIEVGL------LFLTLLFMVFGIWTHRAGREFHKVASTEGSDVGHLMLALTNLLRLYSLVYLIFFIAL 133          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18624.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A3N5JYE1_9BACT2.500e-929.45Uncharacterized protein n=1 Tax=Calditrichaeota ba... [more]
A0A1F9LWX6_9DELT1.950e-832.82Uncharacterized protein n=6 Tax=unclassified Delta... [more]
A0A661D8T3_9GAMM3.760e-832.43Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A4V0I8A9_9BACT6.930e-833.93Uncharacterized protein n=1 Tax=Gemmataceae bacter... [more]
A0A496VD26_9GAMM7.390e-831.06Uncharacterized protein n=2 Tax=Gammaproteobacteri... [more]
A0A7Z9G798_9DELT1.990e-729.46Uncharacterized protein n=1 Tax=Myxococcales bacte... [more]
A0A1U7CV25_9BACT3.710e-731.97Uncharacterized protein n=1 Tax=Paludisphaera bore... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18624contigP-wetherbeei_contig18624:29..469 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog118173.KB235914_gene2760
Model size441
Max annot lvl1117|Cyanobacteria
Hectar predicted targeting categorysignal anchor
Exons1
Evalue1.08e-10
EggNOG OGs2ECYT@1|root,336VT@2|Bacteria,1G9KV@1117|Cyanobacteria,1HD3I@1150|Oscillatoriales
Cds size441
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186151.1093113-CDS-P-wetherbeei_contig18624:28..4691683186151.1093113-CDS-P-wetherbeei_contig18624:28..469Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18624 29..469 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18624.1.1prot_P-wetherbeei_contig18624.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18624 29..469 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18624.1.1

>prot_P-wetherbeei_contig18624.1.1 ID=prot_P-wetherbeei_contig18624.1.1|Name=mRNA_P-wetherbeei_contig18624.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=147bp
EKPTYEFNDEQNATFHALASYMKVAGFLLVAFGGLQLILVTLVSMNMMAV
TRGEGHPFGSLALVQMILSLAITAVYGYMGAWTRKSGHDFQQVVDTHGSD
ITHLMDALSELRISYNWIYLGLFVSLGLMLIWILFGGFLASSINQI*
back to top

mRNA from alignment at P-wetherbeei_contig18624:29..469+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18624.1.1 ID=mRNA_P-wetherbeei_contig18624.1.1|Name=mRNA_P-wetherbeei_contig18624.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=441bp|location=Sequence derived from alignment at P-wetherbeei_contig18624:29..469+ (Phaeothamnion wetherbeei SAG_119_79)
GAAAAGCCAACCTACGAATTCAACGACGAACAAAACGCCACATTTCACGC TCTCGCGTCCTACATGAAAGTGGCCGGCTTCTTGCTGGTTGCGTTCGGCG GGCTGCAGCTCATCCTGGTAACTCTCGTCTCGATGAATATGATGGCGGTG ACGCGCGGAGAAGGACATCCGTTCGGCTCGCTGGCCCTGGTGCAGATGAT CCTATCCCTGGCCATTACGGCTGTGTATGGCTACATGGGGGCCTGGACGC GAAAATCGGGCCACGACTTTCAGCAAGTCGTCGACACCCACGGCAGCGAC ATAACCCACTTGATGGACGCCCTAAGCGAACTTCGTATTTCCTATAACTG GATCTACTTGGGGCTATTCGTGAGCCTGGGTTTGATGCTAATCTGGATTC TCTTCGGCGGCTTTCTGGCTAGCTCGATAAATCAGATATAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig18624:29..469+

>mRNA_P-wetherbeei_contig18624.1.1 ID=mRNA_P-wetherbeei_contig18624.1.1|Name=mRNA_P-wetherbeei_contig18624.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=441bp|location=Sequence derived from alignment at P-wetherbeei_contig18624:29..469+ (Phaeothamnion wetherbeei SAG_119_79)
GAAAAGCCAACCTACGAATTCAACGACGAACAAAACGCCACATTTCACGC
TCTCGCGTCCTACATGAAAGTGGCCGGCTTCTTGCTGGTTGCGTTCGGCG
GGCTGCAGCTCATCCTGGTAACTCTCGTCTCGATGAATATGATGGCGGTG
ACGCGCGGAGAAGGACATCCGTTCGGCTCGCTGGCCCTGGTGCAGATGAT
CCTATCCCTGGCCATTACGGCTGTGTATGGCTACATGGGGGCCTGGACGC
GAAAATCGGGCCACGACTTTCAGCAAGTCGTCGACACCCACGGCAGCGAC
ATAACCCACTTGATGGACGCCCTAAGCGAACTTCGTATTTCCTATAACTG
GATCTACTTGGGGCTATTCGTGAGCCTGGGTTTGATGCTAATCTGGATTC
TCTTCGGCGGCTTTCTGGCTAGCTCGATAAATCAGATATAG
back to top