mRNA_P-wetherbeei_contig18618.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18618.2.1
Unique NamemRNA_P-wetherbeei_contig18618.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig18618.2.1 vs. uniprot
Match: A0A4Y9L5J5_9BRAD (Uncharacterized protein n=1 Tax=Bradyrhizobium frederickii TaxID=2560054 RepID=A0A4Y9L5J5_9BRAD)

HSP 1 Score: 77.8 bits (190), Expect = 1.620e-16
Identity = 38/74 (51.35%), Postives = 56/74 (75.68%), Query Frame = 1
Query:   52 RNVRAVGAMDLTRLSIDDDGRLYWDGKPVEV-RRKLMMSRGQIVGVSLIAVFVVIAALGAAIQGSAAAHEWACK 270
            RNVR++   ++  L ID++GRL+W+GKPVE+  R++ ++RGQ +   ++AVF VIA +GAA QG AA H+WACK
Sbjct:   34 RNVRSISIKEIDGLGIDNEGRLHWNGKPVEIIGRRVDLTRGQSLIAIVVAVFTVIAGIGAAAQGWAAYHDWACK 107          
BLAST of mRNA_P-wetherbeei_contig18618.2.1 vs. uniprot
Match: UPI001FF86325 (hypothetical protein n=2 Tax=Bradyrhizobium TaxID=374 RepID=UPI001FF86325)

HSP 1 Score: 72.0 bits (175), Expect = 5.040e-14
Identity = 34/74 (45.95%), Postives = 51/74 (68.92%), Query Frame = 1
Query:   52 RNVRAVGAMDLTRLSIDDDGRLYWDGKPVEV-RRKLMMSRGQIVGVSLIAVFVVIAALGAAIQGSAAAHEWACK 270
            + VR +   +   L ID+DGRL+W+GKPVE+  R++ ++RGQ     ++A+F +  A+GAA QG AA H+WACK
Sbjct:   56 KGVRPIALSETNGLGIDNDGRLHWNGKPVEIIGRRVDLTRGQSAFAIVVAIFTIFGAIGAAAQGWAAYHDWACK 129          
BLAST of mRNA_P-wetherbeei_contig18618.2.1 vs. uniprot
Match: UPI001FB96ADC (hypothetical protein n=1 Tax=Methylobacterium sp. J-070 TaxID=2836650 RepID=UPI001FB96ADC)

HSP 1 Score: 71.2 bits (173), Expect = 5.830e-14
Identity = 31/77 (40.26%), Postives = 47/77 (61.04%), Query Frame = 1
Query:   40 PEIGRNVRAVGAMDLTRLSIDDDGRLYWDGKPVEVRRKLMMSRGQIVGVSLIAVFVVIAALGAAIQGSAAAHEWACK 270
            P+   +V+ +    L  L +D  G LYWDGKPVEVR+ L ++RGQ     L+  F ++  LG+ +QG+  AH+W C+
Sbjct:   30 PDWPAHVQPISLEGLALLGLDQQGSLYWDGKPVEVRQSLALTRGQKAIAGLVVAFTILGGLGSMLQGAVVAHQWGCQ 106          
BLAST of mRNA_P-wetherbeei_contig18618.2.1 vs. uniprot
Match: UPI001FF87B15 (hypothetical protein n=1 Tax=Bradyrhizobium sp. 180 TaxID=2782650 RepID=UPI001FF87B15)

HSP 1 Score: 69.3 bits (168), Expect = 1.240e-13
Identity = 31/61 (50.82%), Postives = 48/61 (78.69%), Query Frame = 1
Query:   91 LSIDDDGRLYWDGKPVEV-RRKLMMSRGQIVGVSLIAVFVVIAALGAAIQGSAAAHEWACK 270
            L ID+DGRLYW+GKPVE+  R++ ++RGQ +   ++A+F ++ ++GAA QG AA H+WAC+
Sbjct:    7 LGIDNDGRLYWNGKPVEIIGRRVDLTRGQSIFAVVVAIFTIVGSIGAAAQGWAAYHDWACR 67          
BLAST of mRNA_P-wetherbeei_contig18618.2.1 vs. uniprot
Match: UPI001BADE220 (hypothetical protein n=1 Tax=Bradyrhizobium lablabi TaxID=722472 RepID=UPI001BADE220)

HSP 1 Score: 70.5 bits (171), Expect = 1.290e-13
Identity = 36/74 (48.65%), Postives = 51/74 (68.92%), Query Frame = 1
Query:   52 RNVRAVGAMDLTRLSIDDDGRLYWDGKPVE-VRRKLMMSRGQIVGVSLIAVFVVIAALGAAIQGSAAAHEWACK 270
            + VRA+   +   L ID++GRLYW+GKPVE V R+L ++ GQ     ++A+F VI  +GAA QG AA H+WAC+
Sbjct:   34 KGVRAIAWRETDGLGIDNEGRLYWNGKPVEIVGRRLDLTWGQFWIAVIVAIFTVIGGIGAAAQGWAAYHDWACR 107          
BLAST of mRNA_P-wetherbeei_contig18618.2.1 vs. uniprot
Match: UPI001FF93123 (hypothetical protein n=2 Tax=Bradyrhizobium TaxID=374 RepID=UPI001FF93123)

HSP 1 Score: 70.5 bits (171), Expect = 1.490e-13
Identity = 35/74 (47.30%), Postives = 52/74 (70.27%), Query Frame = 1
Query:   52 RNVRAVGAMDLTRLSIDDDGRLYWDGKPVEV-RRKLMMSRGQIVGVSLIAVFVVIAALGAAIQGSAAAHEWACK 270
            RNVR +   +   L ID++GRL+W+GKPVE+  R+L ++  QI   S++A+F V+  +GAA QG AA H+WAC+
Sbjct:   43 RNVRPISMKESDGLGIDNEGRLHWNGKPVEIIGRRLDLTGYQIFLASVVAIFTVVGGVGAAAQGWAAYHDWACR 116          
BLAST of mRNA_P-wetherbeei_contig18618.2.1 vs. uniprot
Match: A0A150ZEV9_9BRAD (Uncharacterized protein n=1 Tax=Bradyrhizobium sp. DOA1 TaxID=1126616 RepID=A0A150ZEV9_9BRAD)

HSP 1 Score: 68.9 bits (167), Expect = 5.670e-13
Identity = 35/74 (47.30%), Postives = 50/74 (67.57%), Query Frame = 1
Query:   52 RNVRAVGAMDLTRLSIDDDGRLYWDGKPVEV-RRKLMMSRGQIVGVSLIAVFVVIAALGAAIQGSAAAHEWACK 270
            + VR +   +   L ID+DGRLYW+GKPVE+  R+L ++ GQ     ++A+F VI  +GAA QG AA H+WAC+
Sbjct:   34 KEVRPIAWKETDGLGIDNDGRLYWNGKPVEIIGRRLDLTWGQFWIALVVAIFTVIGGVGAAAQGWAAYHDWACR 107          
BLAST of mRNA_P-wetherbeei_contig18618.2.1 vs. uniprot
Match: UPI001EE3636E (hypothetical protein n=1 Tax=Methylobacterium cerastii TaxID=932741 RepID=UPI001EE3636E)

HSP 1 Score: 67.4 bits (163), Expect = 1.880e-12
Identity = 30/78 (38.46%), Postives = 48/78 (61.54%), Query Frame = 1
Query:   40 PEIGRNVRAVGAMDLTRLSIDDDGRLYWDGKPVEVRRKLMMSRGQIVGVSLIAVFVVIAALGAAIQGSAAAHEWACKL 273
            P+  + V  +    +  + +DD G LYWDG+PVEVRR+L +SR +     ++  F ++   GA  QG AAAH+W+C++
Sbjct:   31 PDWPKGVHPISLDGIALIGVDDAGLLYWDGRPVEVRRRLDLSRSEKWFAIVVGFFTILGGAGAVAQGWAAAHQWSCQI 108          
BLAST of mRNA_P-wetherbeei_contig18618.2.1 vs. uniprot
Match: B7KPD7_METC4 (Uncharacterized protein n=4 Tax=Methylorubrum extorquens TaxID=408 RepID=B7KPD7_METC4)

HSP 1 Score: 67.4 bits (163), Expect = 1.970e-12
Identity = 34/90 (37.78%), Postives = 52/90 (57.78%), Query Frame = 1
Query:    1 QPESYAAAEPEPTPEIGRNVRAVGAMDLTRLSIDDDGRLYWDGKPVEVRRKLMMSRGQIVGVSLIAVFVVIAALGAAIQGSAAAHEWACK 270
            +P S  A+  E  P     VR +    L  + +  +G L+WDG+PVEVRR+L +S+G+     L+  F +  ++GAA QG AA H+W C+
Sbjct:   16 EPLSRGASFAEGAPHWPAGVRPISIDGLGLMGVSGEGLLHWDGRPVEVRRRLDLSKGERFFAILVGAFTIAGSIGAAAQGWAAGHQWMCQ 105          
BLAST of mRNA_P-wetherbeei_contig18618.2.1 vs. uniprot
Match: A0A537TFN5_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537TFN5_9PROT)

HSP 1 Score: 67.8 bits (164), Expect = 2.310e-12
Identity = 38/76 (50.00%), Postives = 51/76 (67.11%), Query Frame = 1
Query:   52 RNVRAVGAMDLTRLSIDDDGRLYWDGKPVE-VRRKLMMSRGQIVGVSLIAVFVVIAALGAAIQGSAAAHEWACKLG 276
            + VR + ++D   L ID DGRLYWDGKPVE V ++L ++R Q     L+A+F  IAA+G A+Q   A H+WACK G
Sbjct:   42 KTVRTL-SLDDEGLGIDRDGRLYWDGKPVEIVGQRLDLTRTQASVAILVALFTFIAAMGTAVQAWTAYHDWACKTG 116          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18618.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A4Y9L5J5_9BRAD1.620e-1651.35Uncharacterized protein n=1 Tax=Bradyrhizobium fre... [more]
UPI001FF863255.040e-1445.95hypothetical protein n=2 Tax=Bradyrhizobium TaxID=... [more]
UPI001FB96ADC5.830e-1440.26hypothetical protein n=1 Tax=Methylobacterium sp. ... [more]
UPI001FF87B151.240e-1350.82hypothetical protein n=1 Tax=Bradyrhizobium sp. 18... [more]
UPI001BADE2201.290e-1348.65hypothetical protein n=1 Tax=Bradyrhizobium lablab... [more]
UPI001FF931231.490e-1347.30hypothetical protein n=2 Tax=Bradyrhizobium TaxID=... [more]
A0A150ZEV9_9BRAD5.670e-1347.30Uncharacterized protein n=1 Tax=Bradyrhizobium sp.... [more]
UPI001EE3636E1.880e-1238.46hypothetical protein n=1 Tax=Methylobacterium cera... [more]
B7KPD7_METC41.970e-1237.78Uncharacterized protein n=4 Tax=Methylorubrum exto... [more]
A0A537TFN5_9PROT2.310e-1250.00Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18618contigP-wetherbeei_contig18618:1057..1335 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size279
Hectar predicted targeting categorysignal anchor
Exons1
Cds size279
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186150.9139986-CDS-P-wetherbeei_contig18618:1056..13351683186150.9139986-CDS-P-wetherbeei_contig18618:1056..1335Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18618 1057..1335 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18618.2.1prot_P-wetherbeei_contig18618.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18618 1057..1335 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18618.2.1

>prot_P-wetherbeei_contig18618.2.1 ID=prot_P-wetherbeei_contig18618.2.1|Name=mRNA_P-wetherbeei_contig18618.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=93bp
QPESYAAAEPEPTPEIGRNVRAVGAMDLTRLSIDDDGRLYWDGKPVEVRR
KLMMSRGQIVGVSLIAVFVVIAALGAAIQGSAAAHEWACKLGW
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mRNA from alignment at P-wetherbeei_contig18618:1057..1335+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18618.2.1 ID=mRNA_P-wetherbeei_contig18618.2.1|Name=mRNA_P-wetherbeei_contig18618.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=279bp|location=Sequence derived from alignment at P-wetherbeei_contig18618:1057..1335+ (Phaeothamnion wetherbeei SAG_119_79)
CAGCCGGAATCTTACGCGGCCGCAGAACCGGAACCCACACCAGAAATCGG TCGAAATGTCCGTGCGGTCGGTGCCATGGATTTGACGCGGCTCTCCATCG ACGACGACGGCCGGCTCTATTGGGACGGCAAGCCGGTCGAGGTGCGGCGC AAGCTAATGATGTCGCGCGGCCAGATCGTCGGCGTGAGCCTGATCGCCGT TTTTGTGGTGATCGCGGCCCTTGGCGCCGCGATCCAGGGCTCGGCAGCCG CACACGAATGGGCCTGCAAGCTCGGCTGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18618:1057..1335+

>mRNA_P-wetherbeei_contig18618.2.1 ID=mRNA_P-wetherbeei_contig18618.2.1|Name=mRNA_P-wetherbeei_contig18618.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=279bp|location=Sequence derived from alignment at P-wetherbeei_contig18618:1057..1335+ (Phaeothamnion wetherbeei SAG_119_79)
CAGCCGGAATCTTACGCGGCCGCAGAACCGGAACCCACACCAGAAATCGG
TCGAAATGTCCGTGCGGTCGGTGCCATGGATTTGACGCGGCTCTCCATCG
ACGACGACGGCCGGCTCTATTGGGACGGCAAGCCGGTCGAGGTGCGGCGC
AAGCTAATGATGTCGCGCGGCCAGATCGTCGGCGTGAGCCTGATCGCCGT
TTTTGTGGTGATCGCGGCCCTTGGCGCCGCGATCCAGGGCTCGGCAGCCG
CACACGAATGGGCCTGCAAGCTCGGCTGG
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