mRNA_P-wetherbeei_contig18590.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18590.1.1
Unique NamemRNA_P-wetherbeei_contig18590.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig18590.1.1 vs. uniprot
Match: A0A2P6PZR2_ROSCH (Putative transcription factor interactor and regulator CCHC(Zn) family n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6PZR2_ROSCH)

HSP 1 Score: 59.7 bits (143), Expect = 2.590e-8
Identity = 39/119 (32.77%), Postives = 63/119 (52.94%), Query Frame = 1 
Query:    1 FNVLNVSFALRA-----AFSAALCGDGDNTSWIVDSGAQAHVTSSLCGLSNLRHYEGVVRGVGGGTAPITALGDLHSFALDSRGDSIPFSLPDVRYAPSAGFALLSAHRIAANNGIFEL 342
            +N LN+SF  R      +  AA      +++W++DSGA AH+TS+L  L   + Y+G     G GT    ++  + S  L++  DS  F+L ++ Y PSA   LLS ++   +N  + L
Sbjct:   92 YNRLNLSFEGRVPTKKLSAMAASTSSPSSSTWLLDSGANAHITSNLSNLQTSKEYQGSDHINGIGTTTGLSISHIGSSTLNT--DSHSFALNNILYCPSASTNLLSIYKFTNDNNCYLL 208
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BLAST of mRNA_P-wetherbeei_contig18590.1.1 vs. uniprot
Match: UPI0002C35B0E (uncharacterized protein LOC101296391 n=1 Tax=Fragaria vesca subsp. vesca TaxID=101020 RepID=UPI0002C35B0E)

HSP 1 Score: 57.0 bits (136), Expect = 3.690e-7
Identity = 40/119 (33.61%), Postives = 59/119 (49.58%), Query Frame = 1 
Query:    1 FNVLNVSFALRAAFS--AALCGDGDNTS---WIVDSGAQAHVTSSLCGLSNLRHYEGVVRGVGGGTAPITALGDLHSFALDSRGDSIPFSLPDVRYAPSAGFALLSAHRIAANNGIFEL 342
            +N LN+SF  R      +A+   G   +   W++DSGA +H+TS L  L N + Y+G  R   GG    T L   H+ +      +  F L D+ + PSA   LLS +R  ++N  F L
Sbjct:  196 YNRLNLSFQGRVPSRNLSAMAASGSTPAPPTWLLDSGANSHITSDLGNLQNPKEYQGNDRV--GGIGNETPLSISHTGSTTLSTPTHTFKLHDILHCPSASTNLLSIYRFTSDNNCFML 312
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BLAST of mRNA_P-wetherbeei_contig18590.1.1 vs. uniprot
Match: A0A540KAX7_MALBA (Integrase catalytic domain-containing protein n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540KAX7_MALBA)

HSP 1 Score: 51.6 bits (122), Expect = 3.400e-5
Identity = 36/89 (40.45%), Postives = 49/89 (55.06%), Query Frame = 1 
Query:   79 WIVDSGAQAHVTSSLCGLSNLRHYEG--VVRGVGGGTA-PITALGDLHSFALDSRGDSIPFSLPDVRYAPSAGFALLSAHRIAANNGIF 336
            W++DSGA +H+T+ L  LS  R Y G   V GV GGT  PI  +G   S  L     +I F L DV + P A  ++LSA+R   +N  +
Sbjct:  196 WLLDSGANSHITNDLNTLSQSRDYRGGDSVGGVVGGTGLPINRIG---SSPLSHN--NISFKLNDVLHCPDASTSVLSANRFMLDNNCY 279
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BLAST of mRNA_P-wetherbeei_contig18590.1.1 vs. uniprot
Match: A0A4Y1RAH9_PRUDU (Transposable element protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1RAH9_PRUDU)

HSP 1 Score: 51.2 bits (121), Expect = 4.420e-5
Identity = 47/130 (36.15%), Postives = 66/130 (50.77%), Query Frame = 1 
Query:    1 FNVLNVSFALRA------AFSAALCGDGDNTSWIVDSGAQAHVTSSLCGLSNLRHYEG--VVRGVGGGTA-PITALGDLHSFALDSRGDSIPFSLPDVRYAPSAGFALLSAHRIA-------ANNGIFEL 342
            +N LN+S+  R       A +A         +W+VD+GA +H+T+ L  LS  R Y G   V GV GGT  PIT +G   S  L++   SI FSL D+ + P+A   LLS  R         +N G++ L
Sbjct:  260 YNRLNLSYEGRVPTQRLTAMTAQQSSSPRPPNWVVDTGANSHITNDLSNLSLSREYHGHDSVDGVLGGTGLPITHIGSS-SLPLNN---SI-FSLTDILHCPTASCNLLSDSRTGKTLFRGTSNLGLYSL 384
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18590.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2P6PZR2_ROSCH2.590e-832.77Putative transcription factor interactor and regul... [more]
UPI0002C35B0E3.690e-733.61uncharacterized protein LOC101296391 n=1 Tax=Fraga... [more]
A0A540KAX7_MALBA3.400e-540.45Integrase catalytic domain-containing protein n=1 ... [more]
A0A4Y1RAH9_PRUDU4.420e-536.15Transposable element protein n=1 Tax=Prunus dulcis... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18590contigP-wetherbeei_contig18590:138..479 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog57918.XP_004301329.1
PFAMsRetrotran_gag_2
Model size342
Max annot lvl35493|Streptophyta
Hectar predicted targeting categorysignal peptide
Exons1
Evalue6.05e-08
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37V0Y@33090|Viridiplantae,3GM79@35493|Streptophyta
Descriptiongag-polypeptide of LTR copia-type
Cds size342
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186150.1279428-CDS-P-wetherbeei_contig18590:137..4791683186150.1279428-CDS-P-wetherbeei_contig18590:137..479Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18590 138..479 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18590.1.1prot_P-wetherbeei_contig18590.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18590 138..479 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18590.1.1

>prot_P-wetherbeei_contig18590.1.1 ID=prot_P-wetherbeei_contig18590.1.1|Name=mRNA_P-wetherbeei_contig18590.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=114bp
FNVLNVSFALRAAFSAALCGDGDNTSWIVDSGAQAHVTSSLCGLSNLRHY
EGVVRGVGGGTAPITALGDLHSFALDSRGDSIPFSLPDVRYAPSAGFALL
SAHRIAANNGIFEL
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mRNA from alignment at P-wetherbeei_contig18590:138..479+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18590.1.1 ID=mRNA_P-wetherbeei_contig18590.1.1|Name=mRNA_P-wetherbeei_contig18590.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=342bp|location=Sequence derived from alignment at P-wetherbeei_contig18590:138..479+ (Phaeothamnion wetherbeei SAG_119_79)
TTCAACGTTTTGAACGTGTCTTTTGCTCTGCGTGCCGCGTTCTCGGCCGC
TTTGTGCGGCGATGGCGACAACACGAGCTGGATAGTTGACTCTGGCGCCC
AGGCGCACGTTACCAGCTCTCTCTGCGGCCTGTCCAATCTCCGTCACTAC
GAGGGAGTAGTGCGCGGCGTCGGCGGTGGCACCGCACCGATCACTGCTCT
GGGAGACCTGCATAGTTTTGCTCTCGATTCTCGTGGCGACAGCATCCCGT
TTTCTCTTCCAGACGTGCGGTATGCCCCATCTGCCGGTTTTGCGCTCCTT
TCGGCGCACCGCATTGCTGCCAACAACGGCATATTCGAACTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18590:138..479+

>mRNA_P-wetherbeei_contig18590.1.1 ID=mRNA_P-wetherbeei_contig18590.1.1|Name=mRNA_P-wetherbeei_contig18590.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=342bp|location=Sequence derived from alignment at P-wetherbeei_contig18590:138..479+ (Phaeothamnion wetherbeei SAG_119_79)
TTCAACGTTTTGAACGTGTCTTTTGCTCTGCGTGCCGCGTTCTCGGCCGC
TTTGTGCGGCGATGGCGACAACACGAGCTGGATAGTTGACTCTGGCGCCC
AGGCGCACGTTACCAGCTCTCTCTGCGGCCTGTCCAATCTCCGTCACTAC
GAGGGAGTAGTGCGCGGCGTCGGCGGTGGCACCGCACCGATCACTGCTCT
GGGAGACCTGCATAGTTTTGCTCTCGATTCTCGTGGCGACAGCATCCCGT
TTTCTCTTCCAGACGTGCGGTATGCCCCATCTGCCGGTTTTGCGCTCCTT
TCGGCGCACCGCATTGCTGCCAACAACGGCATATTCGAACTG
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