mRNA_P-wetherbeei_contig1858.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1858.2.1
Unique NamemRNA_P-wetherbeei_contig1858.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1858.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1858contigP-wetherbeei_contig1858:3745..6071 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2327
Hectar predicted targeting categoryother localisation
Exons1
Cds size2004
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186149.8511-UTR-P-wetherbeei_contig1858:3744..37941683186149.8511-UTR-P-wetherbeei_contig1858:3744..3794Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1858 3745..3794 +
1683186149.869897-UTR-P-wetherbeei_contig1858:5798..60711683186149.869897-UTR-P-wetherbeei_contig1858:5798..6071Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1858 5799..6071 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186149.8592436-CDS-P-wetherbeei_contig1858:3794..57981683186149.8592436-CDS-P-wetherbeei_contig1858:3794..5798Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1858 3795..5798 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1858.2.1prot_P-wetherbeei_contig1858.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1858 3795..5798 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1858.2.1

>prot_P-wetherbeei_contig1858.2.1 ID=prot_P-wetherbeei_contig1858.2.1|Name=mRNA_P-wetherbeei_contig1858.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=668bp
MEGFKRKGTSSIRGGLRGRAVQPPAKPPIPKPRRRKPWDSNVKDPSIYKL
TPAEQLRRKELLVSKHNVLIFQPDSPPPQRPKPAAKKRAPAAATQLQRPN
AATADKNPSNEITPPSWSVVAPKATVPNMEETGELRLMDIEAEIAAFRRR
IDTLDVGSADGRAGVDAVGSHFGHDEASGDSAVENDDCFSNSWWDEVAPG
AADGGGDSDVEALSSSVAPIPTAGPPEMDATAGFDASPAPAPVAAGSGFP
NRRSFPAAAAVGAAATAVGAATVQAAVPLPPVLLSQLLLVVKHLSERLDA
AEEQLSACAARNDALELQLHELGQQRRQEASPGCTASGPAAAVASLSASA
AAAAGEFPAAAALEARRACSCQAVAAAAVASNFSSAEKAHNVKGVHNGGA
GNLSPDAPPRGGEEGSEDRTPVPAHSGEACGEGLLTVERLAIRLDAPPAL
LWRPPPVGDDDVPAADLSGDSAAAAGDDGEIARLLFATGGNGGGGNGGDG
GSTAGNRSKYRNAAWLSRAASPAEFDGGAFQNAAGDRNAWKACFPPATAL
AATAEWYSAAAAVGNRTAAAGDERSCRTVPTPTPVRSPPHPFAQCRLPVP
TSHDGFRAGSGKENDGGNGGFWQGKSATAEHESGKRNGGGGVGGVGGGIG
RPLGQWGAPSAPTGSFA*
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mRNA from alignment at P-wetherbeei_contig1858:3745..6071+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1858.2.1 ID=mRNA_P-wetherbeei_contig1858.2.1|Name=mRNA_P-wetherbeei_contig1858.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2327bp|location=Sequence derived from alignment at P-wetherbeei_contig1858:3745..6071+ (Phaeothamnion wetherbeei SAG_119_79)
TTCAAACTTGCGCGCCCGTGCCGCTCTTTCAGCCCCCAAACGCGGCAGCC
ATGGAGGGGTTCAAGCGAAAGGGGACCTCTTCCATCCGCGGCGGCCTCCG
GGGGCGCGCCGTGCAGCCGCCAGCGAAACCTCCAATTCCCAAACCGCGGC
GCAGGAAGCCCTGGGACAGCAATGTCAAGGACCCCAGCATTTACAAGCTC
ACGCCGGCGGAGCAGCTCCGACGGAAGGAGCTCCTTGTGTCGAAGCACAA
CGTGTTGATTTTTCAGCCCGATTCGCCGCCGCCACAGCGTCCAAAGCCTG
CCGCCAAGAAACGAGCTCCCGCAGCAGCAACGCAGCTGCAACGGCCAAAT
GCAGCGACTGCCGACAAGAATCCTTCAAATGAGATCACACCGCCCTCTTG
GTCAGTGGTGGCGCCAAAAGCAACCGTACCCAACATGGAGGAAACTGGAG
AACTGCGTCTCATGGACATTGAGGCAGAGATTGCAGCGTTCCGGCGGCGC
ATCGATACCCTGGACGTTGGTAGCGCCGACGGACGGGCTGGCGTTGACGC
TGTGGGCTCGCATTTCGGCCATGATGAAGCATCTGGAGACAGCGCCGTTG
AAAACGACGATTGCTTCTCCAACTCGTGGTGGGACGAAGTAGCGCCGGGT
GCTGCCGACGGCGGCGGCGACTCCGACGTGGAGGCGCTATCGTCTTCCGT
AGCACCAATACCGACTGCGGGCCCGCCGGAGATGGACGCCACTGCCGGCT
TCGACGCGTCGCCGGCACCGGCGCCGGTGGCAGCCGGCAGCGGCTTCCCC
AACCGCCGCTCCTTCCCCGCCGCCGCTGCTGTGGGAGCTGCAGCGACGGC
CGTAGGGGCAGCGACCGTGCAGGCGGCTGTCCCGCTGCCGCCGGTGCTGC
TGTCGCAGCTACTGCTCGTGGTGAAACACCTCTCGGAAAGGCTGGACGCC
GCCGAGGAGCAGCTCTCCGCATGCGCCGCCCGCAACGATGCGCTTGAGCT
CCAGCTGCACGAGCTCGGCCAGCAGCGGCGGCAGGAGGCGTCACCGGGCT
GCACCGCCTCGGGGCCGGCAGCAGCCGTGGCATCGTTGTCTGCGAGTGCG
GCGGCAGCGGCGGGCGAATTCCCTGCCGCCGCCGCGCTGGAGGCTCGCAG
AGCCTGCAGCTGCCAGGCGGTGGCAGCGGCGGCGGTGGCTTCGAATTTTT
CAAGTGCGGAAAAGGCCCACAATGTGAAGGGTGTTCACAATGGCGGGGCG
GGCAATCTTTCGCCCGACGCGCCGCCGCGCGGCGGCGAGGAGGGATCGGA
GGACCGGACGCCGGTGCCGGCGCACTCGGGTGAGGCGTGCGGTGAGGGAC
TGCTGACAGTGGAGCGCCTGGCCATCCGGCTGGACGCACCGCCGGCGCTG
CTGTGGCGGCCGCCACCGGTAGGCGACGACGACGTTCCGGCGGCAGACCT
CAGTGGCGATTCCGCCGCCGCCGCCGGCGACGACGGGGAGATAGCCCGGC
TGCTATTTGCAACTGGTGGCAACGGCGGCGGCGGCAATGGCGGCGACGGC
GGCAGCACTGCCGGCAACCGCTCCAAGTATCGGAACGCCGCGTGGCTGTC
GCGCGCCGCGAGTCCTGCGGAATTCGACGGCGGTGCGTTTCAGAACGCCG
CTGGCGATAGAAACGCCTGGAAGGCGTGCTTTCCGCCTGCAACGGCGTTG
GCGGCGACGGCAGAGTGGTACAGCGCTGCTGCGGCCGTCGGCAACCGCAC
CGCTGCCGCTGGCGACGAGCGCAGCTGCCGCACCGTCCCGACGCCGACGC
CCGTGCGTTCGCCGCCGCATCCGTTTGCACAGTGTCGGTTGCCAGTGCCG
ACCAGTCACGACGGCTTCCGCGCCGGCAGCGGCAAGGAGAACGATGGTGG
AAATGGCGGTTTCTGGCAAGGAAAGTCGGCTACCGCGGAGCACGAATCGG
GCAAGCGGAATGGCGGCGGCGGCGTCGGCGGCGTCGGCGGCGGGATCGGC
CGGCCTCTTGGTCAGTGGGGAGCGCCGTCCGCGCCGACAGGGTCGTTTGC
ATGAGTAAGGATTTCTTGTAGGACTGTCATAGTTAGTTTCCAGAACGGGA
AAGGGCTCATCGCGGGCGCCGATGCCATGACCGACGTCGGGAGAAAGCGG
TGCACAGGTCGGCATTGTCTTCGAAGAGGAAAACACAGTGGCGCATTGAG
TTCGGAAATGCGGGCGGGGGTGGTGCGCCACGTCATCGAGCACGGTGCGG
CACGCAGCGCCGCCTTCGACGCAGGGCTAAAATGTTTTTTTCCCGTTCTC
CTGCAATGCAGTAGCCTAAAATGAAGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1858:3745..6071+

>mRNA_P-wetherbeei_contig1858.2.1 ID=mRNA_P-wetherbeei_contig1858.2.1|Name=mRNA_P-wetherbeei_contig1858.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2004bp|location=Sequence derived from alignment at P-wetherbeei_contig1858:3745..6071+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGGGGTTCAAGCGAAAGGGGACCTCTTCCATCCGCGGCGGCCTCCG
GGGGCGCGCCGTGCAGCCGCCAGCGAAACCTCCAATTCCCAAACCGCGGC
GCAGGAAGCCCTGGGACAGCAATGTCAAGGACCCCAGCATTTACAAGCTC
ACGCCGGCGGAGCAGCTCCGACGGAAGGAGCTCCTTGTGTCGAAGCACAA
CGTGTTGATTTTTCAGCCCGATTCGCCGCCGCCACAGCGTCCAAAGCCTG
CCGCCAAGAAACGAGCTCCCGCAGCAGCAACGCAGCTGCAACGGCCAAAT
GCAGCGACTGCCGACAAGAATCCTTCAAATGAGATCACACCGCCCTCTTG
GTCAGTGGTGGCGCCAAAAGCAACCGTACCCAACATGGAGGAAACTGGAG
AACTGCGTCTCATGGACATTGAGGCAGAGATTGCAGCGTTCCGGCGGCGC
ATCGATACCCTGGACGTTGGTAGCGCCGACGGACGGGCTGGCGTTGACGC
TGTGGGCTCGCATTTCGGCCATGATGAAGCATCTGGAGACAGCGCCGTTG
AAAACGACGATTGCTTCTCCAACTCGTGGTGGGACGAAGTAGCGCCGGGT
GCTGCCGACGGCGGCGGCGACTCCGACGTGGAGGCGCTATCGTCTTCCGT
AGCACCAATACCGACTGCGGGCCCGCCGGAGATGGACGCCACTGCCGGCT
TCGACGCGTCGCCGGCACCGGCGCCGGTGGCAGCCGGCAGCGGCTTCCCC
AACCGCCGCTCCTTCCCCGCCGCCGCTGCTGTGGGAGCTGCAGCGACGGC
CGTAGGGGCAGCGACCGTGCAGGCGGCTGTCCCGCTGCCGCCGGTGCTGC
TGTCGCAGCTACTGCTCGTGGTGAAACACCTCTCGGAAAGGCTGGACGCC
GCCGAGGAGCAGCTCTCCGCATGCGCCGCCCGCAACGATGCGCTTGAGCT
CCAGCTGCACGAGCTCGGCCAGCAGCGGCGGCAGGAGGCGTCACCGGGCT
GCACCGCCTCGGGGCCGGCAGCAGCCGTGGCATCGTTGTCTGCGAGTGCG
GCGGCAGCGGCGGGCGAATTCCCTGCCGCCGCCGCGCTGGAGGCTCGCAG
AGCCTGCAGCTGCCAGGCGGTGGCAGCGGCGGCGGTGGCTTCGAATTTTT
CAAGTGCGGAAAAGGCCCACAATGTGAAGGGTGTTCACAATGGCGGGGCG
GGCAATCTTTCGCCCGACGCGCCGCCGCGCGGCGGCGAGGAGGGATCGGA
GGACCGGACGCCGGTGCCGGCGCACTCGGGTGAGGCGTGCGGTGAGGGAC
TGCTGACAGTGGAGCGCCTGGCCATCCGGCTGGACGCACCGCCGGCGCTG
CTGTGGCGGCCGCCACCGGTAGGCGACGACGACGTTCCGGCGGCAGACCT
CAGTGGCGATTCCGCCGCCGCCGCCGGCGACGACGGGGAGATAGCCCGGC
TGCTATTTGCAACTGGTGGCAACGGCGGCGGCGGCAATGGCGGCGACGGC
GGCAGCACTGCCGGCAACCGCTCCAAGTATCGGAACGCCGCGTGGCTGTC
GCGCGCCGCGAGTCCTGCGGAATTCGACGGCGGTGCGTTTCAGAACGCCG
CTGGCGATAGAAACGCCTGGAAGGCGTGCTTTCCGCCTGCAACGGCGTTG
GCGGCGACGGCAGAGTGGTACAGCGCTGCTGCGGCCGTCGGCAACCGCAC
CGCTGCCGCTGGCGACGAGCGCAGCTGCCGCACCGTCCCGACGCCGACGC
CCGTGCGTTCGCCGCCGCATCCGTTTGCACAGTGTCGGTTGCCAGTGCCG
ACCAGTCACGACGGCTTCCGCGCCGGCAGCGGCAAGGAGAACGATGGTGG
AAATGGCGGTTTCTGGCAAGGAAAGTCGGCTACCGCGGAGCACGAATCGG
GCAAGCGGAATGGCGGCGGCGGCGTCGGCGGCGTCGGCGGCGGGATCGGC
CGGCCTCTTGGTCAGTGGGGAGCGCCGTCCGCGCCGACAGGGTCGTTTGC
ATGA
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