mRNA_P-wetherbeei_contig1856.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1856.1.1
Unique NamemRNA_P-wetherbeei_contig1856.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1856.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1856contigP-wetherbeei_contig1856:1268..2196 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size805
Hectar predicted targeting categoryother localisation
Exons2
Cds size510
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186149.3851423-UTR-P-wetherbeei_contig1856:1267..15561683186149.3851423-UTR-P-wetherbeei_contig1856:1267..1556Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1856 1268..1556 -
1683186149.4140108-UTR-P-wetherbeei_contig1856:2190..21961683186149.4140108-UTR-P-wetherbeei_contig1856:2190..2196Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1856 2191..2196 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186149.3951123-CDS-P-wetherbeei_contig1856:1556..16571683186149.3951123-CDS-P-wetherbeei_contig1856:1556..1657Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1856 1557..1657 -
1683186149.4045844-CDS-P-wetherbeei_contig1856:1781..21901683186149.4045844-CDS-P-wetherbeei_contig1856:1781..2190Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1856 1782..2190 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1856.1.1prot_P-wetherbeei_contig1856.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1856 1557..2190 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1856.1.1

>prot_P-wetherbeei_contig1856.1.1 ID=prot_P-wetherbeei_contig1856.1.1|Name=mRNA_P-wetherbeei_contig1856.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=170bp
MLLARASTVLGLNADPSQSLLEEIKGVVSARVEPLEPAPLAGARLALFYF
WLPLGSGALNYCVASFFEVTEVKCATVQPCENLSFPRLSASLQVQDGDSP
GLVACALFVSTRRSWNGEEGSFSGPPVSLRAILRAVGVEPAAFIGQLSKV
VTACRMDDMAATVSVSYLF*
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mRNA from alignment at P-wetherbeei_contig1856:1268..2196-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1856.1.1 ID=mRNA_P-wetherbeei_contig1856.1.1|Name=mRNA_P-wetherbeei_contig1856.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=929bp|location=Sequence derived from alignment at P-wetherbeei_contig1856:1268..2196- (Phaeothamnion wetherbeei SAG_119_79)
GTCACTATGCTACTCGCGAGAGCCTCAACAGTTCTTGGGTTGAACGCGGA
CCCATCCCAATCTTTGCTGGAGGAAATCAAAGGAGTTGTGAGCGCAAGAG
TAGAGCCTTTAGAGCCTGCTCCTCTAGCGGGCGCGCGCCTTGCTTTGTTT
TATTTTTGGTTGCCACTGGGAAGCGGAGCGTTGAATTACTGTGTTGCCTC
CTTTTTCGAAGTCACTGAGGTGAAGTGCGCCACCGTTCAACCATGTGAAA
ACTTATCGTTTCCACGCCTCTCGGCCTCGCTCCAGGTGCAGGATGGCGAC
TCCCCGGGTTTGGTCGCGTGCGCGCTGTTCGTTTCCACGCGCCGGAGCTG
GAACGGAGAAGAGGGCAGCTTCTCTGGACCGCCCGTCAGCCTCCGGGCGA
TCCTTCGCGCAGTCGGTAACCCAGCGATGTCCCCCCCTTCCACAAAGCAG
GGCGCCTTTCTACCTGCCTGAAGCCCTTGCTGCGATCAAGAGCCCACGCT
ATCGCTTGACTATTCTCTCCCGTCTACTAACATCGTCAGGTGTTGAGCCG
GCAGCCTTCATTGGGCAGCTTTCGAAGGTCGTAACCGCCTGCAGAATGGA
TGACATGGCAGCGACGGTCTCGGTAAGCTACTTATTCTAATCGTATTTCT
CCTCTTCTTTCGCGCGGCTGCAACACAAGCATCGGCAGGGTGCGGCAGGG
CGCGGCTCTGGTAGCCAATAGAGAAAAAGAGCTCCGACTGCGTCCGACGA
GCCAGCTTTAGCAGCATGCTTCCGAGCTTCCTCTTCTGTATAGGGGCCCC
ACTCTTCTACGTATTCTACACACCATACCTGGATACACACAGGCGGCGCG
AGAGGCTATGGTGGTGGGCTCGCTCGTCCGGGGCCGCCTGTTTCAGCTGT
GGGACCGGGCCGCCAACGCACTGCTGCCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1856:1268..2196-

>mRNA_P-wetherbeei_contig1856.1.1 ID=mRNA_P-wetherbeei_contig1856.1.1|Name=mRNA_P-wetherbeei_contig1856.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=510bp|location=Sequence derived from alignment at P-wetherbeei_contig1856:1268..2196- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTACTCGCGAGAGCCTCAACAGTTCTTGGGTTGAACGCGGACCCATC
CCAATCTTTGCTGGAGGAAATCAAAGGAGTTGTGAGCGCAAGAGTAGAGC
CTTTAGAGCCTGCTCCTCTAGCGGGCGCGCGCCTTGCTTTGTTTTATTTT
TGGTTGCCACTGGGAAGCGGAGCGTTGAATTACTGTGTTGCCTCCTTTTT
CGAAGTCACTGAGGTGAAGTGCGCCACCGTTCAACCATGTGAAAACTTAT
CGTTTCCACGCCTCTCGGCCTCGCTCCAGGTGCAGGATGGCGACTCCCCG
GGTTTGGTCGCGTGCGCGCTGTTCGTTTCCACGCGCCGGAGCTGGAACGG
AGAAGAGGGCAGCTTCTCTGGACCGCCCGTCAGCCTCCGGGCGATCCTTC
GCGCAGTCGGTGTTGAGCCGGCAGCCTTCATTGGGCAGCTTTCGAAGGTC
GTAACCGCCTGCAGAATGGATGACATGGCAGCGACGGTCTCGGTAAGCTA
CTTATTCTAA
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