mRNA_P-wetherbeei_contig1855.6.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1855.6.1
Unique NamemRNA_P-wetherbeei_contig1855.6.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1855.6.1 vs. uniprot
Match: A0A835YH16_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YH16_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 3.970e-11
Identity = 46/138 (33.33%), Postives = 69/138 (50.00%), Query Frame = 2 
Query:    2 RLGGVSEPIGEVFTEDDDISFAKLRRIVEVLEDRGMLRPTTIHQEIQLRAIEAGNPHEYSPDERTRYFWGVIPREAAAGEAPVIVPAAAEK-DPVHLHWTDPATHH------LVIVPQSQITRSGECTPKPETTTTAA 394
              GG++  +  V T D+  +  KLR+++EV  DRGMLR TT++QE+      A NPH Y  +    Y  G    +  +   P I+P   E+   + L + +           L++VP +Q+  SG CTP PE T  AA
Sbjct:   25 EAGGLTGRLEHV-TIDEHTALGKLRQLIEVQSDRGMLRRTTLYQELLALMQRARNPHHYGSELALTYRLGYFKHDDDSA-VPTIIPLEHEQAGRLVLEYLEAQEARIKDGIDLIVVPATQVAPSGLCTPVPEPTAAAA 160
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1855.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YH16_9STRA3.970e-1133.33Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1855contigP-wetherbeei_contig1855:4065..5333 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size539
Hectar predicted targeting categoryother localisation
Exons3
Cds size315
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186149.2544239-UTR-P-wetherbeei_contig1855:4064..41821683186149.2544239-UTR-P-wetherbeei_contig1855:4064..4182Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1855 4065..4182 -
1683186149.2883017-UTR-P-wetherbeei_contig1855:4757..47751683186149.2883017-UTR-P-wetherbeei_contig1855:4757..4775Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1855 4758..4775 -
1683186149.296075-UTR-P-wetherbeei_contig1855:5245..53331683186149.296075-UTR-P-wetherbeei_contig1855:5245..5333Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1855 5246..5333 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186149.2703404-CDS-P-wetherbeei_contig1855:4182..43771683186149.2703404-CDS-P-wetherbeei_contig1855:4182..4377Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1855 4183..4377 -
1683186149.280101-CDS-P-wetherbeei_contig1855:4637..47571683186149.280101-CDS-P-wetherbeei_contig1855:4637..4757Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1855 4638..4757 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1855.6.1prot_P-wetherbeei_contig1855.6.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1855 4183..4757 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1855.6.1

>prot_P-wetherbeei_contig1855.6.1 ID=prot_P-wetherbeei_contig1855.6.1|Name=mRNA_P-wetherbeei_contig1855.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=105bp
MLRPTTIHQEIQLRAIEAGNPHEYSPDERTRYFWGVIPREAAAGEAPVIV
PAAAEKDPVHLHWTDPATHHLVIVPQSQITRSGECTPKPETTTTAALALL
LSNG*
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mRNA from alignment at P-wetherbeei_contig1855:4065..5333-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1855.6.1 ID=mRNA_P-wetherbeei_contig1855.6.1|Name=mRNA_P-wetherbeei_contig1855.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1269bp|location=Sequence derived from alignment at P-wetherbeei_contig1855:4065..5333- (Phaeothamnion wetherbeei SAG_119_79)
CCGACTTGGAGGAGTCAGCGAACCAATTGGAGAAGTTTTCACGGAGGACG
ACGATATTTCTTTCGCGAAACTGCGCCGCATCGTGGAGGTGAGACCCGCG
ATTAGGGTGAACCTGCGGCACTGTGACAGGCGAAGCTGAAGGCTGGCCAA
ATTTCGCAGTCCGCTCACAGAGCAACGAAACAAACATGGGATGAGTGTCC
CTGGAGGGAAGGCCTCAAGGACAGTATCTGTGGGTCGTTTCCCTGTAAGG
CTTCGTACCTCTCGAGCGCCATGATCGTTCAAGGGGCACGGCGGCGACGG
CGCGGGGGAACATTATATAGCTGCCCAGGTAGCACATGGCGACGGCTGCA
ACTTTCTGAACCCACGGGGATGCCTGCCATGGCCTTTCCAGCGCCACGGT
TCCTTTGCCTTAAAGGTTAGGATAGATAGCACACACATTTTTTAACGTTA
AACACACAACGTTCAGCGCGCGCCTCCATAAGAAGGCCAAAAACCAACCC
TTGGCCACCATAACCCTAATCAAAGCTTGTTCTTCCACTCATATTCGCCA
AATGAAAGGTGCTGGAAGACCGCGGCATGCTGCGGCCCACGACGATACAC
CAGGAGATTCAGCTGCGGGCGATCGAGGCGGGAAACCCCCATGAATACTC
GCCGGACGAGCGCACGCGATACTTCTGGGGCGTGATTCCGCGCGAGGTGC
GTGTGCCACCGCCCCTGAGCAAACCGAATTGCTGAACACGGTGGCCAGCC
AGCCAGCCGCTGTGCCGACGACATTTTGCCGTTCTTTCAGTGCCAGGAGC
CTCGACTCGATCGACCAAACTTTGATTCGTGAATTCAAAACCAGACTACT
GGCATCCCGGCGACAGCATTCCACATGCGAAAGGCAAATTCTACGGTACT
CGCCCTCCAAATCACCGCTCTTTGCCAATCCCTCTTTCCCCGCAAACGCG
AACCAGGCGGCGGCGGGCGAAGCGCCGGTGATCGTGCCGGCGGCGGCCGA
GAAGGATCCGGTCCACTTGCATTGGACAGACCCGGCGACACACCACCTCG
TCATCGTGCCACAGTCCCAAATAACTCGGAGCGGGGAATGCACGCCCAAG
CCGGAAACAACAACGACGGCGGCATTGGCGCTGCTATTAAGCAACGGGTA
GCTAAAAGTTTACGAAATATGGAATGAAAACAGGAAATTCCGAGACGGTG
AAGAAGTCGACGATTGCAGAGTAAACGACGTTTTGAGCAAACAATTCGTT
CCAGTTATGTCGCATGCTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1855:4065..5333-

>mRNA_P-wetherbeei_contig1855.6.1 ID=mRNA_P-wetherbeei_contig1855.6.1|Name=mRNA_P-wetherbeei_contig1855.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=315bp|location=Sequence derived from alignment at P-wetherbeei_contig1855:4065..5333- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGCGGCCCACGACGATACACCAGGAGATTCAGCTGCGGGCGATCGA
GGCGGGAAACCCCCATGAATACTCGCCGGACGAGCGCACGCGATACTTCT
GGGGCGTGATTCCGCGCGAGGCGGCGGCGGGCGAAGCGCCGGTGATCGTG
CCGGCGGCGGCCGAGAAGGATCCGGTCCACTTGCATTGGACAGACCCGGC
GACACACCACCTCGTCATCGTGCCACAGTCCCAAATAACTCGGAGCGGGG
AATGCACGCCCAAGCCGGAAACAACAACGACGGCGGCATTGGCGCTGCTA
TTAAGCAACGGGTAG
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