mRNA_P-wetherbeei_contig18533.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18533.1.1
Unique NamemRNA_P-wetherbeei_contig18533.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig18533.1.1 vs. uniprot
Match: A0A835Z3T4_9STRA (F-box domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3T4_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 4.810e-20
Identity = 46/76 (60.53%), Postives = 58/76 (76.32%), Query Frame = 1 
Query:    4 VAIACDLTKLVSASVDGVVRVWDMRSGTELFRVEGHSPAIRSVQFTRRLLVTDGTLDCIVGHDFSGEESSGDGEPE 231
            VA+  D  K+VSA+ DGVVRV+DM+ G ELFR+EGHS  IRS+QF RR L+TDGT++ IV HDF+ EE S + E E
Sbjct:  184 VALQGDEVKIVSAASDGVVRVFDMKMGEELFRIEGHSDDIRSLQFDRRFLITDGTMNTIVVHDFASEEGSDEFEIE 259
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BLAST of mRNA_P-wetherbeei_contig18533.1.1 vs. uniprot
Match: F0Y3Q4_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y3Q4_AURAN)

HSP 1 Score: 78.2 bits (191), Expect = 4.030e-15
Identity = 37/68 (54.41%), Postives = 48/68 (70.59%), Query Frame = 1 
Query:    4 VAIACDLTKLVSASVDGVVRVWDMRSGTELFRVEGHSPAIRSVQFTRRLLVTDGTLDCIVGHDFSGEE 207
            VA+  D  KLVSAS+DG VR WD++SG +LF+++GHS  I S+ F   LLV DGT   ++ HDFSG E
Sbjct:  458 VALQADDAKLVSASIDGTVRCWDLKSGDQLFKLDGHSRHINSLHFQGDLLVADGTQGTVIVHDFSGRE 525
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BLAST of mRNA_P-wetherbeei_contig18533.1.1 vs. uniprot
Match: A0A8J2WZB6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WZB6_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 1.410e-14
Identity = 39/70 (55.71%), Postives = 50/70 (71.43%), Query Frame = 1 
Query:    4 VAIACDLTKLVSASVDGVVRVWDMRSGTELFRVEGHSPAIRSVQFTRRLLVTDGTLDCIVGHDFSGEESS 213
            VA+  D TKLVSAS+DG VR WD+R+G +LF ++GHS  I S+ F   LLV+DGT   +V HDFSG+  S
Sbjct:  458 VAVQADDTKLVSASIDGSVRCWDLRTGAQLFALDGHSRHITSLHFEGPLLVSDGTGGNVVVHDFSGKVRS 527
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BLAST of mRNA_P-wetherbeei_contig18533.1.1 vs. uniprot
Match: A0A7S1UJJ5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UJJ5_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 6.030e-8
Identity = 33/76 (43.42%), Postives = 46/76 (60.53%), Query Frame = 1 
Query:    4 VAIACDLTKLVSASVDGVVRVW--------DMRSGTELFRVEGHSPAIRSVQFTRRLLVTDGTLDCIVGHDFSGEE 207
            V++  D +KLV+AS+DG +RVW        D+      F ++G S  IRSV F   LLV+DGT D ++ HDF+ EE
Sbjct:  297 VSMQADDSKLVTASLDGSIRVWPLSAIRANDVEELLPQFSIQGFSNGIRSVAFEDALLVSDGTHDKVIVHDFAVEE 372
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BLAST of mRNA_P-wetherbeei_contig18533.1.1 vs. uniprot
Match: A0A7S3YJS6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YJS6_HETAK)

HSP 1 Score: 49.7 bits (117), Expect = 2.420e-5
Identity = 24/64 (37.50%), Postives = 40/64 (62.50%), Query Frame = 1 
Query:    7 AIACDLTKLVSASVDGVVRVWDMRSGTELFRVEGHSPAIRSVQFTRRLLVTDGTLDCIVGHDFS 198
            A+  D  K+VSAS DG V+VWD+ +G  LF V G + ++  + +  + LVTDG  +  + ++F+
Sbjct:  116 ALQADCNKIVSASTDGAVKVWDITTGQILFEVYGDN-SVCCIHYDSKTLVTDGVKNSAIVYNFA 178
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18533.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A835Z3T4_9STRA4.810e-2060.53F-box domain-containing protein n=1 Tax=Tribonema ... [more]
F0Y3Q4_AURAN4.030e-1554.41Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A8J2WZB6_9STRA1.410e-1455.71Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S1UJJ5_9STRA6.030e-843.42Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S3YJS6_HETAK2.420e-537.50Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18533contigP-wetherbeei_contig18533:353..586 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog44056.XP_009035319.1
PFAMsWD40
Model size234
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.61e-16
EggNOG OGsKOG0274@1|root,KOG0274@2759|Eukaryota
DescriptionSCF-dependent proteasomal ubiquitin-dependent protein catabolic process
Cds size234
COG categoryM
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186148.7110672-CDS-P-wetherbeei_contig18533:352..5861683186148.7110672-CDS-P-wetherbeei_contig18533:352..586Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18533 353..586 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18533.1.1prot_P-wetherbeei_contig18533.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18533 353..586 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18533.1.1

>prot_P-wetherbeei_contig18533.1.1 ID=prot_P-wetherbeei_contig18533.1.1|Name=mRNA_P-wetherbeei_contig18533.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=78bp
TVAIACDLTKLVSASVDGVVRVWDMRSGTELFRVEGHSPAIRSVQFTRRL
LVTDGTLDCIVGHDFSGEESSGDGEPEI
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mRNA from alignment at P-wetherbeei_contig18533:353..586+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18533.1.1 ID=mRNA_P-wetherbeei_contig18533.1.1|Name=mRNA_P-wetherbeei_contig18533.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=234bp|location=Sequence derived from alignment at P-wetherbeei_contig18533:353..586+ (Phaeothamnion wetherbeei SAG_119_79)
ACAGTGGCAATCGCCTGCGACCTGACCAAGCTCGTTTCGGCGTCCGTCGA
CGGCGTCGTCCGCGTGTGGGACATGCGCAGCGGCACCGAGCTCTTCCGCG
TCGAAGGGCACTCGCCGGCAATCCGCTCCGTCCAGTTTACGCGCCGGCTT
TTAGTCACCGATGGGACGCTGGACTGCATCGTGGGGCACGACTTTTCCGG
GGAGGAGTCTAGCGGCGATGGCGAGCCGGAAATT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18533:353..586+

>mRNA_P-wetherbeei_contig18533.1.1 ID=mRNA_P-wetherbeei_contig18533.1.1|Name=mRNA_P-wetherbeei_contig18533.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=234bp|location=Sequence derived from alignment at P-wetherbeei_contig18533:353..586+ (Phaeothamnion wetherbeei SAG_119_79)
ACAGTGGCAATCGCCTGCGACCTGACCAAGCTCGTTTCGGCGTCCGTCGA
CGGCGTCGTCCGCGTGTGGGACATGCGCAGCGGCACCGAGCTCTTCCGCG
TCGAAGGGCACTCGCCGGCAATCCGCTCCGTCCAGTTTACGCGCCGGCTT
TTAGTCACCGATGGGACGCTGGACTGCATCGTGGGGCACGACTTTTCCGG
GGAGGAGTCTAGCGGCGATGGCGAGCCGGAAATT
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