mRNA_P-wetherbeei_contig18524.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18524.1.1
Unique NamemRNA_P-wetherbeei_contig18524.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig18524.1.1 vs. uniprot
Match: A0A7S2S0E2_9STRA (Vacuolar protein sorting-associated protein 51 homolog n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S0E2_9STRA)

HSP 1 Score: 148 bits (373), Expect = 3.440e-39
Identity = 75/107 (70.09%), Postives = 89/107 (83.18%), Query Frame = 1
Query:    1 QVKKLDSDMQMLVYENYNKFISATDTIRKMKQNVESMEAEMGSLVKNMDRIGESSAKINGKLAGKRERIDKLVRVRRLLKRLEFLFELPQKLQEAVEQGSFGQAIRW 321
            ++K LDSDMQMLVYENYNKFI+ATDTIR MKQNVESME EM  LV +MD I + S  IN  LA KR +IDKLVRVRRLLKRLEF FELPQ+LQ+ +++GSF QA+++
Sbjct:  110 EIKALDSDMQMLVYENYNKFITATDTIRSMKQNVESMEGEMDILVASMDEIADKSEHINSSLASKRSQIDKLVRVRRLLKRLEFFFELPQRLQQCIDEGSFAQAVKY 216          
BLAST of mRNA_P-wetherbeei_contig18524.1.1 vs. uniprot
Match: A0A6H5JIJ8_9PHAE (Vacuolar protein sorting-associated protein 51 homolog (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIJ8_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 4.620e-39
Identity = 75/107 (70.09%), Postives = 91/107 (85.05%), Query Frame = 1
Query:    1 QVKKLDSDMQMLVYENYNKFISATDTIRKMKQNVESMEAEMGSLVKNMDRIGESSAKINGKLAGKRERIDKLVRVRRLLKRLEFLFELPQKLQEAVEQGSFGQAIRW 321
            +VKKLDSDMQMLVYENYNKFISATDTIRKM QNVE ME EM  L  +M+RI ESSA +N  L G R ++DKLVRVRRLL+RL+FLF+LPQ+L+EAV++G + +AIR+
Sbjct:   94 EVKKLDSDMQMLVYENYNKFISATDTIRKMAQNVEGMETEMSDLKSSMERIAESSATVNTSLEGNRSKMDKLVRVRRLLQRLDFLFQLPQRLEEAVQEGQYAKAIRY 200          
BLAST of mRNA_P-wetherbeei_contig18524.1.1 vs. uniprot
Match: D8LRL8_ECTSI (Vacuolar protein sorting-associated protein 51 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRL8_ECTSI)

HSP 1 Score: 147 bits (372), Expect = 4.870e-39
Identity = 75/107 (70.09%), Postives = 91/107 (85.05%), Query Frame = 1
Query:    1 QVKKLDSDMQMLVYENYNKFISATDTIRKMKQNVESMEAEMGSLVKNMDRIGESSAKINGKLAGKRERIDKLVRVRRLLKRLEFLFELPQKLQEAVEQGSFGQAIRW 321
            +VKKLDSDMQMLVYENYNKFISATDTIRKM QNVE ME EM  L  +M+RI ESSA +N  L G R ++DKLVRVRRLL+RL+FLF+LPQ+L+EAV++G + +AIR+
Sbjct:   94 EVKKLDSDMQMLVYENYNKFISATDTIRKMAQNVEGMETEMSDLKSSMERIAESSATVNTSLEGNRSKMDKLVRVRRLLQRLDFLFQLPQRLEEAVQEGQYAKAIRY 200          
BLAST of mRNA_P-wetherbeei_contig18524.1.1 vs. uniprot
Match: A0A7S2DPT5_9STRA (Vacuolar protein sorting-associated protein 51 homolog (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DPT5_9STRA)

HSP 1 Score: 135 bits (341), Expect = 7.870e-39
Identity = 70/107 (65.42%), Postives = 87/107 (81.31%), Query Frame = 1
Query:    1 QVKKLDSDMQMLVYENYNKFISATDTIRKMKQNVESMEAEMGSLVKNMDRIGESSAKINGKLAGKRERIDKLVRVRRLLKRLEFLFELPQKLQEAVEQGSFGQAIRW 321
            +VK LDSDMQMLVYENYNKFI+AT+TIRKMK NV+SM+AEM +LV NM  I + S  +N  LA KR +IDKLVRVRRLLKRLEFLF+LP +L  ++E  ++ QA+R+
Sbjct:   14 EVKALDSDMQMLVYENYNKFIAATETIRKMKHNVDSMDAEMDTLVGNMATIADCSEVVNASLADKRSQIDKLVRVRRLLKRLEFLFDLPSRLARSIEMQAYSQAVRY 120          
BLAST of mRNA_P-wetherbeei_contig18524.1.1 vs. uniprot
Match: K3WGS7_GLOUD (Vacuolar protein sorting-associated protein 51 homolog n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WGS7_GLOUD)

HSP 1 Score: 126 bits (317), Expect = 1.250e-31
Identity = 65/107 (60.75%), Postives = 85/107 (79.44%), Query Frame = 1
Query:    1 QVKKLDSDMQMLVYENYNKFISATDTIRKMKQNVESMEAEMGSLVKNMDRIGESSAKINGKLAGKRERIDKLVRVRRLLKRLEFLFELPQKLQEAVEQGSFGQAIRW 321
            ++K+LD++MQMLVYENYNKFISATDTIRKMK NV SME E+G +VK+MD I E S  IN  LA  R +++KL+ VRRLLKRLEF+F+LPQ+L  A++Q  +  A ++
Sbjct:   66 EIKELDTNMQMLVYENYNKFISATDTIRKMKNNVASMEEEVGKVVKSMDVITEKSESINVALAPHRSKVEKLIGVRRLLKRLEFIFDLPQRLNTALKQEEYANATKY 172          
BLAST of mRNA_P-wetherbeei_contig18524.1.1 vs. uniprot
Match: C3YJ63_BRAFL (Vacuolar protein sorting-associated protein 51 homolog n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3YJ63_BRAFL)

HSP 1 Score: 120 bits (300), Expect = 2.550e-31
Identity = 62/107 (57.94%), Postives = 82/107 (76.64%), Query Frame = 1
Query:    1 QVKKLDSDMQMLVYENYNKFISATDTIRKMKQNVESMEAEMGSLVKNMDRIGESSAKINGKLAGKRERIDKLVRVRRLLKRLEFLFELPQKLQEAVEQGSFGQAIRW 321
            Q++ LDSDMQ LVYENYNKFISATDTIRKMK + + ME EM  L  NM+ I E SA+I+G L  +R++I KL  V  LLK+L+FLFELP +L++ +E  ++GQA+R+
Sbjct:   82 QIRSLDSDMQTLVYENYNKFISATDTIRKMKNDFKKMEDEMDRLATNMESITEFSARISGTLQDRRQQITKLSGVHMLLKKLQFLFELPARLKKCIEMQAYGQAVRY 188          
BLAST of mRNA_P-wetherbeei_contig18524.1.1 vs. uniprot
Match: G4ZPF6_PHYSP (Vacuolar protein sorting-associated protein 51 homolog n=4 Tax=Phytophthora TaxID=4783 RepID=G4ZPF6_PHYSP)

HSP 1 Score: 125 bits (314), Expect = 3.200e-31
Identity = 65/107 (60.75%), Postives = 83/107 (77.57%), Query Frame = 1
Query:    1 QVKKLDSDMQMLVYENYNKFISATDTIRKMKQNVESMEAEMGSLVKNMDRIGESSAKINGKLAGKRERIDKLVRVRRLLKRLEFLFELPQKLQEAVEQGSFGQAIRW 321
            ++K+LD++MQMLVYENYNKFISATDTIRKMK NV SME E+G +VK+MD I   S  IN  LA  R +++KL+ VRRLLKR EF+FELPQ+L  AV+Q  +  A ++
Sbjct:  116 EIKELDTNMQMLVYENYNKFISATDTIRKMKNNVASMEEEVGRVVKSMDTITAKSESINVALAPHRSKVEKLIGVRRLLKRFEFIFELPQRLNTAVKQKEYANATKY 222          
BLAST of mRNA_P-wetherbeei_contig18524.1.1 vs. uniprot
Match: D0MQY8_PHYIT (Vacuolar protein sorting-associated protein 51 homolog n=29 Tax=Phytophthora TaxID=4783 RepID=D0MQY8_PHYIT)

HSP 1 Score: 124 bits (311), Expect = 8.060e-31
Identity = 65/107 (60.75%), Postives = 82/107 (76.64%), Query Frame = 1
Query:    1 QVKKLDSDMQMLVYENYNKFISATDTIRKMKQNVESMEAEMGSLVKNMDRIGESSAKINGKLAGKRERIDKLVRVRRLLKRLEFLFELPQKLQEAVEQGSFGQAIRW 321
            ++K LD++MQMLVYENYNKFISATDTIRKMK NV SME E+G +VK+MD I   S  IN  LA  R +++KL+ VRRLLKR EF+FELPQ+L  AV+Q  +  A ++
Sbjct:   65 EIKDLDTNMQMLVYENYNKFISATDTIRKMKNNVASMEDEVGRVVKSMDTITAKSESINVALAPHRSKVEKLIGVRRLLKRFEFIFELPQRLSTAVKQKEYANATKY 171          
BLAST of mRNA_P-wetherbeei_contig18524.1.1 vs. uniprot
Match: A0A0P1A6A9_PLAHL (Vacuolar protein sorting-associated protein 51 homolog n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A6A9_PLAHL)

HSP 1 Score: 124 bits (311), Expect = 8.080e-31
Identity = 65/107 (60.75%), Postives = 83/107 (77.57%), Query Frame = 1
Query:    1 QVKKLDSDMQMLVYENYNKFISATDTIRKMKQNVESMEAEMGSLVKNMDRIGESSAKINGKLAGKRERIDKLVRVRRLLKRLEFLFELPQKLQEAVEQGSFGQAIRW 321
            ++K+LD++MQMLVYENYNKFISATDTIRKMK NV SMEAE+G +VK+MD I   S  IN  LA  R  ++KL+ VRRLLKR EF+F+LPQ+L  AV Q ++  A ++
Sbjct:   78 EIKELDTNMQMLVYENYNKFISATDTIRKMKDNVASMEAEVGRVVKSMDIITAKSESINVALAPHRSTVEKLIGVRRLLKRFEFIFDLPQRLNTAVRQKNYANATKY 184          
BLAST of mRNA_P-wetherbeei_contig18524.1.1 vs. uniprot
Match: H3GBT0_PHYRM (Vacuolar protein sorting-associated protein 51 homolog n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GBT0_PHYRM)

HSP 1 Score: 124 bits (310), Expect = 1.100e-30
Identity = 64/107 (59.81%), Postives = 83/107 (77.57%), Query Frame = 1
Query:    1 QVKKLDSDMQMLVYENYNKFISATDTIRKMKQNVESMEAEMGSLVKNMDRIGESSAKINGKLAGKRERIDKLVRVRRLLKRLEFLFELPQKLQEAVEQGSFGQAIRW 321
            ++K+LD++MQMLVYENYNKFISATDTIRKMK NV SME E+G +VK+MD I   S  IN  LA  R +++KL+ VRRLLKR EF+F+LPQ+L  AV+Q  +  A ++
Sbjct:   98 EIKELDTNMQMLVYENYNKFISATDTIRKMKNNVASMEDEVGRVVKSMDTITAKSESINVALAPHRSKVEKLIGVRRLLKRFEFIFDLPQRLNTAVKQKEYANATKY 204          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18524.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2S0E2_9STRA3.440e-3970.09Vacuolar protein sorting-associated protein 51 hom... [more]
A0A6H5JIJ8_9PHAE4.620e-3970.09Vacuolar protein sorting-associated protein 51 hom... [more]
D8LRL8_ECTSI4.870e-3970.09Vacuolar protein sorting-associated protein 51 hom... [more]
A0A7S2DPT5_9STRA7.870e-3965.42Vacuolar protein sorting-associated protein 51 hom... [more]
K3WGS7_GLOUD1.250e-3160.75Vacuolar protein sorting-associated protein 51 hom... [more]
C3YJ63_BRAFL2.550e-3157.94Vacuolar protein sorting-associated protein 51 hom... [more]
G4ZPF6_PHYSP3.200e-3160.75Vacuolar protein sorting-associated protein 51 hom... [more]
D0MQY8_PHYIT8.060e-3160.75Vacuolar protein sorting-associated protein 51 hom... [more]
A0A0P1A6A9_PLAHL8.080e-3160.75Vacuolar protein sorting-associated protein 51 hom... [more]
H3GBT0_PHYRM1.100e-3059.81Vacuolar protein sorting-associated protein 51 hom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18524contigP-wetherbeei_contig18524:305..1035 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LRL8
PFAMsFox-1_C,RRM_1,Vps51
Model size321
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00043
KEGG koko:K00928,ko:K14946,ko:K20296
KEGG ReactionR00480
KEGG Pathwayko00260,ko00261,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01210,ko01230,map00260,map00261,map00270,map00300,map01100,map01110,map01120,map01130,map01210,map01230
KEGG ModuleM00016,M00017,M00018,M00033,M00525,M00526,M00527
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.03e-35
EggNOG OGsKOG2346@1|root,KOG2346@2759|Eukaryota
EC2.7.2.4
Descriptionendocytic recycling
Cds size297
COG categoryG
BRITEko00000,ko00001,ko00002,ko01000,ko03041,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186148.4569361-CDS-P-wetherbeei_contig18524:304..5111683186148.4569361-CDS-P-wetherbeei_contig18524:304..511Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18524 305..511 -
1683186148.4699295-CDS-P-wetherbeei_contig18524:921..10111683186148.4699295-CDS-P-wetherbeei_contig18524:921..1011Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18524 922..1011 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186148.4803157-UTR-P-wetherbeei_contig18524:1011..10351683186148.4803157-UTR-P-wetherbeei_contig18524:1011..1035Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig18524 1012..1035 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18524.1.1prot_P-wetherbeei_contig18524.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18524 305..1011 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18524.1.1

>prot_P-wetherbeei_contig18524.1.1 ID=prot_P-wetherbeei_contig18524.1.1|Name=mRNA_P-wetherbeei_contig18524.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=99bp
MQMLVYENYNKFISATDTIRKMKQNVESMEAEMGSLVKNMDRIGESSAKI
NGKLAGKRERIDKLVRVRRLLKRLEFLFELPQKLQEAVEQGSFGQAIRW
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mRNA from alignment at P-wetherbeei_contig18524:305..1035-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18524.1.1 ID=mRNA_P-wetherbeei_contig18524.1.1|Name=mRNA_P-wetherbeei_contig18524.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=731bp|location=Sequence derived from alignment at P-wetherbeei_contig18524:305..1035- (Phaeothamnion wetherbeei SAG_119_79)
CAGGTGAAGAAGCTGGACTCCGACATGCAGATGCTGGTGTACGAAAACTA CAACAAGTTCATTTCCGCCACTGACACCATCCGAAAGATGAAGCAGAACG TCGAGTCCATGGAGGTAAGAGTAGAGCTTACGCCGGGCACATTATTTTCA GTTTCCCATGTGAAGGCTCGGCTGCGTGGTTGTTGAGCCATTTTTGCCTG CGTAAAATTTGGTACAGGCGGCATGGTGCCCGCTACCGAGGGCGAACGCT ACAGGCGTGCAGCAGGTCTGATTAGTCCGCGACTTCTCTGATACCGTAAA GTACTTCTTTTGGCACAGTTGGCCTGAGGGCAGCGGCGAAACACGTTCCG GTTTCATGAGCGTTTACTGGAGCTGCTAGTTAGCCCTTTTCATTTTATGC CCCCATTCTCTTTCTTGATCTGCTCCCCTCATGGTTTGACTGCCCAAAAT GCTTTCTAGTCTTCTGCTCGAATTGTCTTTGTAACCGACATTCTCTGGGC CGATCTTCTGATCGTCCGCCGCAGGCGGAGATGGGCTCGCTGGTGAAGAA TATGGACCGCATCGGAGAGTCGTCGGCCAAGATCAACGGCAAGCTGGCGG GCAAGCGGGAGCGCATCGACAAGCTGGTGCGGGTGCGGCGGCTGCTCAAG CGGCTCGAGTTCCTGTTCGAGCTGCCGCAGAAGCTGCAGGAGGCCGTGGA GCAGGGATCCTTCGGCCAGGCCATCAGGTGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18524:305..1035-

>mRNA_P-wetherbeei_contig18524.1.1 ID=mRNA_P-wetherbeei_contig18524.1.1|Name=mRNA_P-wetherbeei_contig18524.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=297bp|location=Sequence derived from alignment at P-wetherbeei_contig18524:305..1035- (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGATGCTGGTGTACGAAAACTACAACAAGTTCATTTCCGCCACTGA
CACCATCCGAAAGATGAAGCAGAACGTCGAGTCCATGGAGGCGGAGATGG
GCTCGCTGGTGAAGAATATGGACCGCATCGGAGAGTCGTCGGCCAAGATC
AACGGCAAGCTGGCGGGCAAGCGGGAGCGCATCGACAAGCTGGTGCGGGT
GCGGCGGCTGCTCAAGCGGCTCGAGTTCCTGTTCGAGCTGCCGCAGAAGC
TGCAGGAGGCCGTGGAGCAGGGATCCTTCGGCCAGGCCATCAGGTGG
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