mRNA_P-wetherbeei_contig1852.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1852.5.1
Unique NamemRNA_P-wetherbeei_contig1852.5.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1852.5.1 vs. uniprot
Match: D8LF64_ECTSI (Clu domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF64_ECTSI)

HSP 1 Score: 211 bits (537), Expect = 1.090e-65
Identity = 104/145 (71.72%), Postives = 117/145 (80.69%), Query Frame = 1
Query:  190 QGIADTGENWNGRFQEALDMPEDTPQHQYRKYMMLTTLNRDFVHAAVTYGQTIISEYFVHTKDKSIRPRR-LGGIAGGRKYLWRGILFKLADGSTGPYCGNDEAAAKGAGHDLRGATHYFSARVPGLHFALQCVIDYKGFRMTAQ 621
            Q   +TG NWN  FQ ALD+PEDTP   YRK+  +TT+NRDF  AAVTYG+TIISEYF+  K KSI+P   LGG AGG K++WRGILFKLADGS GPY GNDEAAAKGAGHDLRGATHY  AR+ GL +ALQC+IDYKGFRMTAQ
Sbjct:    3 QPYRETG-NWNELFQSALDLPEDTPDQCYRKWERMTTVNRDFKAAAVTYGKTIISEYFLDLKHKSIKPNENLGGSAGGMKFVWRGILFKLADGSRGPYLGNDEAAAKGAGHDLRGATHYLDARIRGLRYALQCLIDYKGFRMTAQ 146          
BLAST of mRNA_P-wetherbeei_contig1852.5.1 vs. uniprot
Match: D7G5G9_ECTSI (Clu domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5G9_ECTSI)

HSP 1 Score: 223 bits (567), Expect = 1.120e-64
Identity = 108/165 (65.45%), Postives = 127/165 (76.97%), Query Frame = 1
Query:  127 KEVSRRGLEEIQSLLFDTAPAQGIADTGENWNGRFQEALDMPEDTPQHQYRKYMMLTTLNRDFVHAAVTYGQTIISEYFVHTKDKSIRPRRLGGIAGGRKYLWRGILFKLADGSTGPYCGNDEAAAKGAGHDLRGATHYFSARVPGLHFALQCVIDYKGFRMTAQ 621
            +EV  R  E  + L+F     Q   +TG NWN  FQ ALD+PE+TP   YRK+  LTT+NRDF   AVTYG+TIISEYF+ T+ KSIR + LGG+AGG K++WRGILFKLADGS GPY GNDEAAAKGAGHDLRGATHY + R+ GL +ALQC+IDYKGFRMTAQ
Sbjct:  219 REVPDRSWERFRELVFPDDMEQAYRETG-NWNELFQSALDLPEETPDQCYRKWERLTTVNRDFKATAVTYGKTIISEYFLETEHKSIRLKELGGVAGGMKFVWRGILFKLADGSKGPYLGNDEAAAKGAGHDLRGATHYLATRIRGLRYALQCLIDYKGFRMTAQ 382          
BLAST of mRNA_P-wetherbeei_contig1852.5.1 vs. uniprot
Match: D7G9G7_ECTSI (Clu domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9G7_ECTSI)

HSP 1 Score: 200 bits (509), Expect = 8.740e-59
Identity = 103/208 (49.52%), Postives = 133/208 (63.94%), Query Frame = 1
Query:    4 QTEICQAYRDEARRGLSFDCEVCDPESNGSNSQHRRISSISKEVSRRGLEEIQSLLFDTAPAQGIADTGENWNGRFQEALDMPEDTPQHQYRKYMMLTTLNRDFVHAAVTYGQTIISEYFVHTKDKSIRPRRLGGIAGGRKYLWRGILFKLADGSTGPYCGNDEAAAKGAGHDLRGATHYFSARVPGLHFALQCVIDYKGFRMTAQVN 627
            Q ++C+  R E R GL  DCE C       +S  ++ + I     ++  ++   LLF       ++D G+NWN R+QEAL +P  T      K   L  +  DFVH AVTYG+TIISEYF+H   KS++P+RLGG+AGG+KYLWRGILFKLADGS GPY G+DEAAAK AGH+LRGA+ Y    V GL     C++DYKGFRM AQ +
Sbjct:   36 QEKLCRDMRKEMRAGLHVDCEAC-------SSAGKKSADIKSRNQKKAWKDTDELLFKGMARVQMSDRGDNWNDRWQEALSLPNKTKMDINYKRRSLDAVYSDFVHTAVTYGRTIISEYFLHEYMKSVKPKRLGGLAGGKKYLWRGILFKLADGSQGPYGGSDEAAAKAAGHELRGASEYLHTGV-GLCIPPMCLLDYKGFRMLAQAH 235          
BLAST of mRNA_P-wetherbeei_contig1852.5.1 vs. uniprot
Match: A0A835YKN4_9STRA (CLU domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKN4_9STRA)

HSP 1 Score: 179 bits (454), Expect = 7.520e-53
Identity = 83/143 (58.04%), Postives = 109/143 (76.22%), Query Frame = 1
Query:  184 PAQGIADTGENWNGRFQEALDMPEDTPQHQYRKYMMLTTLNRDFVHAAVTYGQTIISEYFVHTKDKSIRPRRLGGIAGGRKYLWRGILFKLADGSTGPYCGNDEAAAKGAGHDLRGATHYFSARVPGLHFALQCVIDYKGFRM 612
            P   + D G+NWN  FQEA  +PE T   +  K+++L T+ RDF  AAV YG+TIISE+F+H+  +SIRPR +GG AGG+K+L+RGILFKLADG+ GP+ G+DEAAAK AGH+LRG ++Y  A V GLHF+  C++DYKGFRM
Sbjct:   21 PRVKVEDLGDNWNALFQEAQALPEATEMERTYKHLLLATVYRDFTAAAVMYGRTIISEFFLHSYLRSIRPREVGGFAGGKKFLFRGILFKLADGAVGPWAGSDEAAAKAAGHELRGHSYYAHAGVAGLHFSPMCILDYKGFRM 163          
BLAST of mRNA_P-wetherbeei_contig1852.5.1 vs. uniprot
Match: A0A835ZAL9_9STRA (CLU domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAL9_9STRA)

HSP 1 Score: 152 bits (384), Expect = 8.480e-43
Identity = 74/115 (64.35%), Postives = 88/115 (76.52%), Query Frame = 1
Query:  277 RKYMMLTTLNRDFVHAAVTYGQTIISEYFVHTKDKSIRPRRLGGIAGGRKYLWRGILFKLADGSTGPYCGNDEAAAKGAGHDLRGATHYFSARVPGLHFALQCVIDYKGFRMTAQ 621
            RKY  LT LN+DF+ AAVTYG+TIISEYF+  + KS+ P  +GGIAGGRK+L RGILFKLADGS GPY G+DEAA K   +DL+GA H     +PGL  +LQ +IDYKGFRM AQ
Sbjct:   18 RKYQALTALNKDFISAAVTYGRTIISEYFLKEEAKSVCPSLVGGIAGGRKFLLRGILFKLADGSRGPYDGSDEAAGKALNNDLKGAVHLVKCSIPGLFCSLQALIDYKGFRMHAQ 132          
BLAST of mRNA_P-wetherbeei_contig1852.5.1 vs. uniprot
Match: A0A7S4DG52_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DG52_HETAK)

HSP 1 Score: 138 bits (347), Expect = 3.790e-38
Identity = 63/107 (58.88%), Postives = 80/107 (74.77%), Query Frame = 1
Query:  208 GENWNGRFQEALDMPEDTPQHQYRKYMMLTTLNRDFVHAAVTYGQTIISEYFVHTKDKSIRPRRLGGIAGGRKYLWRGILFKLADGSTGPYCGNDEAAAKGAGHDLR 528
            G++WN RFQ A+ +PE T + +  KY +LT++NRDF+  A TY +T+ISEYF+    KS++  + GGIAGGRKY WRGILFKLADG  GPY G+D AAAK  GHDLR
Sbjct:   37 GDDWNERFQHAISLPESTDEEKLLKYTLLTSVNRDFIATAETYAKTVISEYFLPEHLKSVKSGQFGGIAGGRKYCWRGILFKLADGQCGPYEGSDAAAAKAMGHDLR 143          
BLAST of mRNA_P-wetherbeei_contig1852.5.1 vs. uniprot
Match: F0YQT9_AURAN (Clu domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YQT9_AURAN)

HSP 1 Score: 124 bits (310), Expect = 2.300e-30
Identity = 67/140 (47.86%), Postives = 87/140 (62.14%), Query Frame = 1
Query:  202 DTGENWNGRFQEALDMPEDTPQHQYRKYMMLTTLNRDFVHAAVTYGQTIISEYFVHTKDKSIRPRRLGGIAGGRKYLWRGILFKLADGSTGPYCGNDEAAAKGAGHDLRGATHYFSARVPGLHFALQCVIDYKGFRMTAQ 621
            D  + WN RFQ +L  PE    H +     LT LNRDFV  A T  +TI+ E   +  +K++ P  LGG AGGRK+   GI+FK  DG   P+ G+D+AA K  GHDL+GA    +ARVPG+H ALQCV+DY  +R+ AQ
Sbjct:   29 DVDDGWNARFQRSL--PEG---HAFA----LTELNRDFVFVASTVARTIVLE--TYAAEKTVAPSDLGGQAGGRKFATHGIIFKCVDGGRAPFYGDDDAAHKCVGHDLKGANAVLAARVPGVHVALQCVVDYLDYRIHAQ 157          
BLAST of mRNA_P-wetherbeei_contig1852.5.1 vs. uniprot
Match: L8HEJ1_ACACA (Protein unc-45 homolog B n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HEJ1_ACACA)

HSP 1 Score: 124 bits (311), Expect = 4.110e-29
Identity = 77/184 (41.85%), Postives = 105/184 (57.07%), Query Frame = 1
Query:   76 PESNGSNSQHRRISSISKEVSRRGLEEIQSLLFDTAPAQGIA-DTG--ENWNGRFQEALDMPEDTPQHQYRKYMMLTTLNRDFVHAAVTYGQTIISEYFVHTKDKSIRPRRLGGIAGGRKYLWRGILFKLADGSTGPYCGNDEAAAKGAGHDLRGATHYFSARVPGLHFALQCVIDYKGFRMTA 618
            P SNG ++   R ++  K+  R  +E +++ +        +  D G   NWN  FQ+ L   +   +        L TL +DFV AA  YG+ IISE F+  K K+I+P  +GG+AGG KY+ RGILFK A    G Y G DE +AK A H+L+G   YFS  V GLHF L  +IDY+GFR+TA
Sbjct: 1095 PRSNGPHTP--RTAATVKDERRHQVERLENAVRSVESRLCVEEDRGAERNWNKEFQDILGTGQQADK--------LCTLAKDFVAAAKMYGKIIISEVFLPYKQKTIKPISIGGVAGGEKYIHRGILFKFAMDWEGLY-GGDEYSAKVASHELKGLARYFSCAVRGLHFPLMALIDYRGFRLTA 1267          
BLAST of mRNA_P-wetherbeei_contig1852.5.1 vs. uniprot
Match: A0A151Z6I8_9MYCE (Uncharacterized protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151Z6I8_9MYCE)

HSP 1 Score: 121 bits (304), Expect = 3.510e-28
Identity = 61/135 (45.19%), Postives = 88/135 (65.19%), Query Frame = 1
Query:  214 NWNGRFQEALDMPEDTPQHQYRKYMMLTTLNRDFVHAAVTYGQTIISEYFVHTKDKSIRPRRLGGIAGGRKYLWRGILFKLADGSTGPYCGNDEAAAKGAGHDLRGATHYFSARVPGLHFALQCVIDYKGFRMTA 618
            +WN  FQ+ L +PED    +++KY  L++L++DF+HAA+TYG+ II E F+ TK K+I+P  +GG AGG KY++ GILFK A      Y G DE + K AGH+L+    Y      G+H  L  V+D++GFR+ A
Sbjct:  223 DWNQYFQKLLLLPEDDLDQKFKKYKTLSSLSKDFLHAAITYGKIIIEEAFIDTKYKTIKPTSVGGQAGGIKYVYNGILFKFALDWIQIY-GGDEFSMKAAGHELKSVMRYCGC--DGIHVPLMVVLDHRGFRLVA 354          
BLAST of mRNA_P-wetherbeei_contig1852.5.1 vs. uniprot
Match: A0A6H5KFE7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFE7_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 3.630e-28
Identity = 54/66 (81.82%), Postives = 60/66 (90.91%), Query Frame = 1
Query:  424 KYLWRGILFKLADGSTGPYCGNDEAAAKGAGHDLRGATHYFSARVPGLHFALQCVIDYKGFRMTAQ 621
            K++WRGILFKLADGS GPY GNDEAAAKGAGHDLRGATHY + R+ GL +ALQC+IDYKGFRMTAQ
Sbjct:    2 KFVWRGILFKLADGSKGPYLGNDEAAAKGAGHDLRGATHYLATRIRGLRYALQCLIDYKGFRMTAQ 67          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1852.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LF64_ECTSI1.090e-6571.72Clu domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G5G9_ECTSI1.120e-6465.45Clu domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G9G7_ECTSI8.740e-5949.52Clu domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835YKN4_9STRA7.520e-5358.04CLU domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A835ZAL9_9STRA8.480e-4364.35CLU domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A7S4DG52_HETAK3.790e-3858.88Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
F0YQT9_AURAN2.300e-3047.86Clu domain-containing protein (Fragment) n=1 Tax=A... [more]
L8HEJ1_ACACA4.110e-2941.85Protein unc-45 homolog B n=1 Tax=Acanthamoeba cast... [more]
A0A151Z6I8_9MYCE3.510e-2845.19Uncharacterized protein n=1 Tax=Tieghemostelium la... [more]
A0A6H5KFE7_9PHAE3.630e-2881.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1852contigP-wetherbeei_contig1852:5266..6291 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7G5G9
PFAMsCLU,eIF3_p135
Model size639
Max annot lvl2759|Eukaryota
KEGG koko:K02987
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.84e-65
EggNOG OGsKOG1839@1|root,KOG1839@2759|Eukaryota
Descriptionintracellular distribution of mitochondria
Cds size639
COG categoryS
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186148.411014-CDS-P-wetherbeei_contig1852:5265..55381683186148.411014-CDS-P-wetherbeei_contig1852:5265..5538Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1852 5266..5538 +
1683186148.4202085-CDS-P-wetherbeei_contig1852:5740..58421683186148.4202085-CDS-P-wetherbeei_contig1852:5740..5842Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1852 5741..5842 +
1683186148.4284253-CDS-P-wetherbeei_contig1852:6027..62911683186148.4284253-CDS-P-wetherbeei_contig1852:6027..6291Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1852 6028..6291 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1852.5.1prot_P-wetherbeei_contig1852.5.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1852 5266..6291 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1852.5.1

>prot_P-wetherbeei_contig1852.5.1 ID=prot_P-wetherbeei_contig1852.5.1|Name=mRNA_P-wetherbeei_contig1852.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=213bp
EQTEICQAYRDEARRGLSFDCEVCDPESNGSNSQHRRISSISKEVSRRGL
EEIQSLLFDTAPAQGIADTGENWNGRFQEALDMPEDTPQHQYRKYMMLTT
LNRDFVHAAVTYGQTIISEYFVHTKDKSIRPRRLGGIAGGRKYLWRGILF
KLADGSTGPYCGNDEAAAKGAGHDLRGATHYFSARVPGLHFALQCVIDYK
GFRMTAQVNKSG*
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mRNA from alignment at P-wetherbeei_contig1852:5266..6291+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1852.5.1 ID=mRNA_P-wetherbeei_contig1852.5.1|Name=mRNA_P-wetherbeei_contig1852.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1026bp|location=Sequence derived from alignment at P-wetherbeei_contig1852:5266..6291+ (Phaeothamnion wetherbeei SAG_119_79)
GAGCAGACCGAGATCTGCCAAGCGTACCGCGACGAGGCCCGTCGGGGGCT ATCTTTCGATTGCGAGGTCTGCGATCCCGAGAGCAATGGGAGCAATTCCC AGCACCGCCGCATTAGCTCGATTTCGAAGGAGGTGTCGAGGCGGGGCTTA GAGGAGATCCAGAGCCTCCTCTTCGACACGGCGCCCGCGCAGGGCATAGC GGACACGGGAGAGAACTGGAACGGGCGCTTCCAGGAGGCGCTCGACATGC CTGAGGACACTCCTCAGCATCAGGTGCAGAAGGAAGTTTCGTTGTTCGAC GTTTGAACAGCTTGGCCGCTTTCCGTTTCGCTCAGGATCACGGCCCGTTT ACCCCCTGTTGCAGCTGTTGCTTATCGACATTCTCATTGCTCTCAACCGA CCGTCATCGTCTTTTCCCACCCCGGCAATGTTCTTCTCCTCCGGACGCGG CTTGTTCATTCTCCGCGTTCTGCAGTACCGCAAGTACATGATGCTGACGA CGCTCAACAGGGATTTCGTCCACGCCGCCGTGACGTACGGCCAGACCATC ATTTCCGAGTACTTTGTGCACACCAAGGTCAGGCTGCCCTGGCTGCCCTT TTACTAGGCGTCCTTTCCCGCGGGTACTGTCCTTTTCAGAGAAACCTTCC CAGTCTCCTTGCACGTTCCGCACGCTGGGATATTATTTTGTTCGTTCCCG ACTGGTCTTCCTCGACAATGATGGTGCACCATTCTTCCTCCCTCGGCTCC TCCCCCTCACAGGACAAGAGCATCCGGCCACGGCGGCTGGGCGGCATTGC AGGCGGGCGCAAGTACCTGTGGCGCGGCATCCTCTTCAAGCTGGCGGACG GATCGACGGGCCCTTACTGCGGCAACGACGAGGCGGCGGCCAAGGGTGCC GGCCACGACCTCCGTGGGGCCACCCACTACTTCAGCGCACGGGTGCCGGG CCTCCACTTCGCGCTGCAGTGCGTTATCGACTACAAGGGGTTCCGGATGA CGGCACAGGTGAATAAGAGCGGTTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1852:5266..6291+

>mRNA_P-wetherbeei_contig1852.5.1 ID=mRNA_P-wetherbeei_contig1852.5.1|Name=mRNA_P-wetherbeei_contig1852.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=639bp|location=Sequence derived from alignment at P-wetherbeei_contig1852:5266..6291+ (Phaeothamnion wetherbeei SAG_119_79)
GAGCAGACCGAGATCTGCCAAGCGTACCGCGACGAGGCCCGTCGGGGGCT
ATCTTTCGATTGCGAGGTCTGCGATCCCGAGAGCAATGGGAGCAATTCCC
AGCACCGCCGCATTAGCTCGATTTCGAAGGAGGTGTCGAGGCGGGGCTTA
GAGGAGATCCAGAGCCTCCTCTTCGACACGGCGCCCGCGCAGGGCATAGC
GGACACGGGAGAGAACTGGAACGGGCGCTTCCAGGAGGCGCTCGACATGC
CTGAGGACACTCCTCAGCATCAGTACCGCAAGTACATGATGCTGACGACG
CTCAACAGGGATTTCGTCCACGCCGCCGTGACGTACGGCCAGACCATCAT
TTCCGAGTACTTTGTGCACACCAAGGACAAGAGCATCCGGCCACGGCGGC
TGGGCGGCATTGCAGGCGGGCGCAAGTACCTGTGGCGCGGCATCCTCTTC
AAGCTGGCGGACGGATCGACGGGCCCTTACTGCGGCAACGACGAGGCGGC
GGCCAAGGGTGCCGGCCACGACCTCCGTGGGGCCACCCACTACTTCAGCG
CACGGGTGCCGGGCCTCCACTTCGCGCTGCAGTGCGTTATCGACTACAAG
GGGTTCCGGATGACGGCACAGGTGAATAAGAGCGGTTAA
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