mRNA_P-wetherbeei_contig1852.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1852.1.1
Unique NamemRNA_P-wetherbeei_contig1852.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1852.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1852contigP-wetherbeei_contig1852:70..1862 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1531
Hectar predicted targeting categoryother localisation
Exons2
Cds size1404
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186148.271237-CDS-P-wetherbeei_contig1852:69..14041683186148.271237-CDS-P-wetherbeei_contig1852:69..1404Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1852 70..1404 -
1683186148.2798593-CDS-P-wetherbeei_contig1852:1666..17351683186148.2798593-CDS-P-wetherbeei_contig1852:1666..1735Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1852 1667..1735 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186148.2890735-UTR-P-wetherbeei_contig1852:1735..18621683186148.2890735-UTR-P-wetherbeei_contig1852:1735..1862Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1852 1736..1862 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1852.1.1prot_P-wetherbeei_contig1852.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1852 70..1735 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1852.1.1

>prot_P-wetherbeei_contig1852.1.1 ID=prot_P-wetherbeei_contig1852.1.1|Name=mRNA_P-wetherbeei_contig1852.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=468bp
MDVDFETYTPGRSLSDAERKEIQAAVNAKYGVEFGPETVDYVLVALQLRC
RKTVPIFSLETELEDVINDCRPFLLWLAQKVRAVTEPEPKNEKQDEKQER
GDTKDGGGHDDGHDRRLASGDSRDRGARGDRGDSRGRRGRNDRDGDRRLR
RNHSGERNNRRDDDRRSSGNGGGDGRNGYFTQQGRQRNRWNDNDDDSRGS
RERDDRVGERRRNGGARTGGGGGFGGGGGFFGSFGRNGGGGGGDGNGSGG
GSGGDGNGRNEGPRRQSHTQRNSGGGINDNDETANGRLLRMDSQQSQRNS
NRGAEELLDSDLRHKITLAKKRQAELMADDTKEAPDAAAPRRAIAGGMQP
PTVLFGKALRDTIQSIDGAQPSKRARVVTFGGGFGSHAGTAAQQFAAAAD
DQDFFHRGSVQPFSPETQAAFAYQQAAAASAGAAAFFGGSERFQLAAVPF
AYPFPMVPAVAFGGTAFR
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mRNA from alignment at P-wetherbeei_contig1852:70..1862-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1852.1.1 ID=mRNA_P-wetherbeei_contig1852.1.1|Name=mRNA_P-wetherbeei_contig1852.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1793bp|location=Sequence derived from alignment at P-wetherbeei_contig1852:70..1862- (Phaeothamnion wetherbeei SAG_119_79)
CAGCGCCCCAGCGAGAATTCAACACAAAGCTCTCCTGTTCACAGAGAAAC
GCCGAATTCGGTAGCAATATTACCACCAGATCGCTTTCTTCGTGCTGAAC
ATCGACATTCGAGACTTCCCCCCAGCAATGGATGTAGACTTCGAGACCTA
CACGCCCGGGCGGAGCCTTTCGGATGCGGAACGGAAGGAGATTCAGGTGC
GTTGTCGTTTCGAGGCCCGCAGTACCTCGAAGGATGCTTTTGAATAACGG
CAAGATCGAGGCTCGAGGCTGCCGCAAACACTATAGCTTCATCTCCCTTT
GCGACCGCGCACAGATAGTGGGGCTTAACCGACAGTGAAAGCAGGCCTCC
GTCGAAGCCTCAGCCAGCTTTCGCCGCCGCTCGCTTGGAGGTTACGTATC
GCAGCGCCAAACAACCCCTTCCTAAGAAAGCCCCCAAATCTCAATTTCCA
TCGCACAGGCGGCCGTGAATGCCAAATATGGGGTCGAATTTGGCCCAGAA
ACGGTCGACTACGTGCTCGTCGCCCTGCAGCTCAGATGCCGCAAGACGGT
GCCGATCTTTAGCCTGGAGACCGAGCTTGAGGACGTCATAAACGACTGCC
GTCCGTTTCTGCTGTGGCTGGCCCAAAAGGTTCGAGCTGTCACGGAGCCG
GAGCCGAAAAACGAAAAGCAAGACGAAAAGCAGGAGCGCGGCGACACCAA
AGACGGTGGCGGCCACGACGACGGCCACGACCGTCGCCTTGCCAGCGGAG
ACAGCCGGGACCGCGGCGCCCGCGGCGACCGCGGCGACAGTCGCGGCCGT
CGAGGACGCAATGACCGCGACGGCGACCGGCGCCTTCGCCGCAACCATAG
CGGCGAGCGCAACAACCGCCGCGACGACGACCGCCGCAGCAGCGGCAACG
GCGGCGGCGATGGCCGCAATGGCTACTTCACGCAACAAGGCCGCCAACGG
AACCGTTGGAACGATAATGACGACGACAGCCGGGGCAGCCGCGAGCGGGA
CGATCGTGTTGGCGAGCGACGCCGTAATGGCGGGGCTCGCACCGGCGGGG
GCGGCGGCTTCGGCGGCGGCGGCGGCTTCTTCGGCAGCTTCGGCCGCAAC
GGCGGCGGCGGCGGCGGCGACGGCAACGGCAGTGGGGGCGGCAGCGGCGG
CGATGGCAACGGAAGGAATGAGGGGCCGCGCCGCCAGAGTCACACCCAGC
GCAACAGCGGAGGCGGCATCAACGACAACGACGAGACCGCGAACGGCCGG
TTGCTTCGCATGGACAGCCAGCAGAGCCAGCGCAACAGCAACCGCGGCGC
CGAAGAGCTTCTGGATTCCGACCTCCGCCACAAGATCACGCTCGCCAAGA
AGCGCCAGGCCGAGCTCATGGCGGACGACACAAAGGAGGCGCCGGACGCG
GCGGCCCCTCGCCGCGCCATCGCAGGCGGCATGCAGCCGCCGACCGTCCT
TTTCGGAAAGGCATTGCGAGACACCATCCAGTCCATCGACGGGGCCCAGC
CTTCTAAACGCGCGCGGGTCGTCACGTTCGGCGGTGGGTTCGGCTCACAC
GCAGGAACGGCGGCGCAGCAGTTTGCGGCGGCAGCGGACGACCAGGATTT
CTTCCACCGGGGCAGCGTGCAACCATTTTCGCCGGAGACGCAAGCGGCCT
TTGCCTATCAGCAGGCGGCGGCGGCATCCGCTGGGGCAGCGGCGTTCTTC
GGCGGCTCAGAGCGCTTCCAGCTCGCGGCCGTCCCTTTCGCCTATCCGTT
CCCGATGGTTCCCGCAGTCGCCTTTGGCGGCACCGCGTTCCGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1852:70..1862-

>mRNA_P-wetherbeei_contig1852.1.1 ID=mRNA_P-wetherbeei_contig1852.1.1|Name=mRNA_P-wetherbeei_contig1852.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1404bp|location=Sequence derived from alignment at P-wetherbeei_contig1852:70..1862- (Phaeothamnion wetherbeei SAG_119_79)
ATGGATGTAGACTTCGAGACCTACACGCCCGGGCGGAGCCTTTCGGATGC
GGAACGGAAGGAGATTCAGGCGGCCGTGAATGCCAAATATGGGGTCGAAT
TTGGCCCAGAAACGGTCGACTACGTGCTCGTCGCCCTGCAGCTCAGATGC
CGCAAGACGGTGCCGATCTTTAGCCTGGAGACCGAGCTTGAGGACGTCAT
AAACGACTGCCGTCCGTTTCTGCTGTGGCTGGCCCAAAAGGTTCGAGCTG
TCACGGAGCCGGAGCCGAAAAACGAAAAGCAAGACGAAAAGCAGGAGCGC
GGCGACACCAAAGACGGTGGCGGCCACGACGACGGCCACGACCGTCGCCT
TGCCAGCGGAGACAGCCGGGACCGCGGCGCCCGCGGCGACCGCGGCGACA
GTCGCGGCCGTCGAGGACGCAATGACCGCGACGGCGACCGGCGCCTTCGC
CGCAACCATAGCGGCGAGCGCAACAACCGCCGCGACGACGACCGCCGCAG
CAGCGGCAACGGCGGCGGCGATGGCCGCAATGGCTACTTCACGCAACAAG
GCCGCCAACGGAACCGTTGGAACGATAATGACGACGACAGCCGGGGCAGC
CGCGAGCGGGACGATCGTGTTGGCGAGCGACGCCGTAATGGCGGGGCTCG
CACCGGCGGGGGCGGCGGCTTCGGCGGCGGCGGCGGCTTCTTCGGCAGCT
TCGGCCGCAACGGCGGCGGCGGCGGCGGCGACGGCAACGGCAGTGGGGGC
GGCAGCGGCGGCGATGGCAACGGAAGGAATGAGGGGCCGCGCCGCCAGAG
TCACACCCAGCGCAACAGCGGAGGCGGCATCAACGACAACGACGAGACCG
CGAACGGCCGGTTGCTTCGCATGGACAGCCAGCAGAGCCAGCGCAACAGC
AACCGCGGCGCCGAAGAGCTTCTGGATTCCGACCTCCGCCACAAGATCAC
GCTCGCCAAGAAGCGCCAGGCCGAGCTCATGGCGGACGACACAAAGGAGG
CGCCGGACGCGGCGGCCCCTCGCCGCGCCATCGCAGGCGGCATGCAGCCG
CCGACCGTCCTTTTCGGAAAGGCATTGCGAGACACCATCCAGTCCATCGA
CGGGGCCCAGCCTTCTAAACGCGCGCGGGTCGTCACGTTCGGCGGTGGGT
TCGGCTCACACGCAGGAACGGCGGCGCAGCAGTTTGCGGCGGCAGCGGAC
GACCAGGATTTCTTCCACCGGGGCAGCGTGCAACCATTTTCGCCGGAGAC
GCAAGCGGCCTTTGCCTATCAGCAGGCGGCGGCGGCATCCGCTGGGGCAG
CGGCGTTCTTCGGCGGCTCAGAGCGCTTCCAGCTCGCGGCCGTCCCTTTC
GCCTATCCGTTCCCGATGGTTCCCGCAGTCGCCTTTGGCGGCACCGCGTT
CCGT
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