mRNA_P-wetherbeei_contig18481.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18481.1.1
Unique NamemRNA_P-wetherbeei_contig18481.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig18481.1.1 vs. uniprot
Match: D8LE62_ECTSI (GPI inositol-deacylase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE62_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 9.900e-16
Identity = 38/74 (51.35%), Postives = 47/74 (63.51%), Query Frame = 1 
Query:    4 CGACFHEDGGRGAVFIESSNETVPLSPGVALGPGFRVVACDCGIGADAAGATAVAAGEEEFCEFCCCACNACGG 225
            CG C H DGG GAV++E+  + V + PGV+LGPGFRVVACDC     A+ +T        +CEFC C C  CGG
Sbjct:  887 CGKCLHADGGEGAVYVETDRDRVRVGPGVSLGPGFRVVACDCPQREPASPST--------WCEFCRCVCKFCGG 952
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18481.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LE62_ECTSI9.900e-1651.35GPI inositol-deacylase n=2 Tax=Ectocarpus TaxID=28... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18481contigP-wetherbeei_contig18481:113..355 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LE62
PFAMsPGAP1
Model size243
Max annot lvl2759|Eukaryota
KEGG koko:K03263,ko:K05294
KEGG Pathwayko00563,ko01100,map00563,map01100
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.62e-16
EggNOG OGsKOG3724@1|root,KOG3724@2759|Eukaryota
Descriptionphosphatidylinositol deacylase activity
Cds size243
COG categoryJ
BRITEko00000,ko00001,ko01000,ko03012
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186147.3586743-CDS-P-wetherbeei_contig18481:112..3551683186147.3586743-CDS-P-wetherbeei_contig18481:112..355Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18481 113..355 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18481.1.1prot_P-wetherbeei_contig18481.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18481 113..355 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18481.1.1

>prot_P-wetherbeei_contig18481.1.1 ID=prot_P-wetherbeei_contig18481.1.1|Name=mRNA_P-wetherbeei_contig18481.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=81bp
ECGACFHEDGGRGAVFIESSNETVPLSPGVALGPGFRVVACDCGIGADAA
GATAVAAGEEEFCEFCCCACNACGGGFHRRR
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mRNA from alignment at P-wetherbeei_contig18481:113..355-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18481.1.1 ID=mRNA_P-wetherbeei_contig18481.1.1|Name=mRNA_P-wetherbeei_contig18481.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=243bp|location=Sequence derived from alignment at P-wetherbeei_contig18481:113..355- (Phaeothamnion wetherbeei SAG_119_79)
GAATGCGGCGCTTGCTTTCACGAAGACGGCGGGCGCGGGGCCGTTTTCAT
CGAGTCGAGCAATGAGACCGTTCCACTGTCGCCCGGCGTCGCGCTGGGGC
CGGGCTTCCGGGTCGTGGCTTGCGATTGCGGCATCGGCGCCGACGCCGCC
GGGGCCACCGCCGTCGCCGCCGGAGAAGAAGAATTCTGCGAATTTTGTTG
CTGCGCGTGCAACGCATGCGGGGGCGGCTTTCATCGGCGCCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18481:113..355-

>mRNA_P-wetherbeei_contig18481.1.1 ID=mRNA_P-wetherbeei_contig18481.1.1|Name=mRNA_P-wetherbeei_contig18481.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=243bp|location=Sequence derived from alignment at P-wetherbeei_contig18481:113..355- (Phaeothamnion wetherbeei SAG_119_79)
GAATGCGGCGCTTGCTTTCACGAAGACGGCGGGCGCGGGGCCGTTTTCAT
CGAGTCGAGCAATGAGACCGTTCCACTGTCGCCCGGCGTCGCGCTGGGGC
CGGGCTTCCGGGTCGTGGCTTGCGATTGCGGCATCGGCGCCGACGCCGCC
GGGGCCACCGCCGTCGCCGCCGGAGAAGAAGAATTCTGCGAATTTTGTTG
CTGCGCGTGCAACGCATGCGGGGGCGGCTTTCATCGGCGCCGC
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