mRNA_P-wetherbeei_contig18472.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18472.1.1
Unique NamemRNA_P-wetherbeei_contig18472.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig18472.1.1 vs. uniprot
Match: A0A835ZE99_9STRA (Tryptophan--tRNA ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE99_9STRA)

HSP 1 Score: 156 bits (394), Expect = 1.480e-42
Identity = 76/98 (77.55%), Postives = 88/98 (89.80%), Query Frame = 1 
Query:   49 QVVTPWAVESDSDGIDYDKLVVSFGSRLITEDLIAKVERLTGRRAHRFLRRGLFFSHRDLGELLARVECGEKFYLYTGRGPSSEALHLGHLVPFHFTR 342
            QVVTPW VE+D + +DY+KLVV+FGS+LI+ED++A+VERLT RRAHRFLRRGLFFSHRDL +LL   E GEKFYLYTGRGPSSEALHLGHLVPF FT+
Sbjct:  219 QVVTPWEVEADEE-VDYNKLVVAFGSQLISEDMVARVERLTNRRAHRFLRRGLFFSHRDLNQLLDLYEKGEKFYLYTGRGPSSEALHLGHLVPFQFTQ 315
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BLAST of mRNA_P-wetherbeei_contig18472.1.1 vs. uniprot
Match: W7TK77_9STRA (Tryptophan--tRNA ligase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TK77_9STRA)

HSP 1 Score: 152 bits (384), Expect = 2.800e-41
Identity = 76/114 (66.67%), Postives = 86/114 (75.44%), Query Frame = 1 
Query:    1 KQENGASXXXXXXXXXQVVTPWAVESDSDGIDYDKLVVSFGSRLITEDLIAKVERLTGRRAHRFLRRGLFFSHRDLGELLARVECGEKFYLYTGRGPSSEALHLGHLVPFHFTR 342
            K  NG S         QVVTPW VE D + IDYDKL+ SFGS  ITE L++++ERLT R+ HRFLRRGLFFSHRDL +LL   E G KFYLYTGRGPSSE+LHLGHL+PFHFTR
Sbjct:  204 KGGNGGSIGSASGEGGQVVTPWEVEGDQE-IDYDKLIKSFGSMRITESLVSRIERLTNRKCHRFLRRGLFFSHRDLTQLLDLYEKGTKFYLYTGRGPSSESLHLGHLIPFHFTR 316
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BLAST of mRNA_P-wetherbeei_contig18472.1.1 vs. uniprot
Match: D8LNT5_ECTSI (Tryptophan--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNT5_ECTSI)

HSP 1 Score: 152 bits (385), Expect = 3.160e-41
Identity = 72/98 (73.47%), Postives = 87/98 (88.78%), Query Frame = 1 
Query:   49 QVVTPWAVESDSDGIDYDKLVVSFGSRLITEDLIAKVERLTGRRAHRFLRRGLFFSHRDLGELLARVECGEKFYLYTGRGPSSEALHLGHLVPFHFTR 342
            Q VTPW VE+D + +DY+KLV SFGS LITED++A+VER+TGR+AHRFLRRGLFFSHRDL ++L   E G+KF+LYTGRGPSS+ALHLGHLVPFHFT+
Sbjct:  215 QKVTPWEVEADGE-VDYEKLVKSFGSSLITEDIVARVERVTGRKAHRFLRRGLFFSHRDLTQILDLYEAGKKFFLYTGRGPSSDALHLGHLVPFHFTK 311
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BLAST of mRNA_P-wetherbeei_contig18472.1.1 vs. uniprot
Match: A0A4D9CRR7_9STRA (Tryptophan--tRNA ligase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CRR7_9STRA)

HSP 1 Score: 152 bits (384), Expect = 4.020e-41
Identity = 75/114 (65.79%), Postives = 87/114 (76.32%), Query Frame = 1 
Query:    1 KQENGASXXXXXXXXXQVVTPWAVESDSDGIDYDKLVVSFGSRLITEDLIAKVERLTGRRAHRFLRRGLFFSHRDLGELLARVECGEKFYLYTGRGPSSEALHLGHLVPFHFTR 342
            K+ NG +         QVVTPW VE D + IDYDKL+ SFGS  ITE L++++ERLT R+ HRFLRRGLFFSHRDL +LL   E G KFYLYTGRGPSSE+LHLGHL+PFHFTR
Sbjct:  204 KRGNGGNIGSASGEGGQVVTPWEVEGDQE-IDYDKLIKSFGSMRITESLVSRIERLTNRKCHRFLRRGLFFSHRDLTQLLDLYEKGTKFYLYTGRGPSSESLHLGHLIPFHFTR 316
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BLAST of mRNA_P-wetherbeei_contig18472.1.1 vs. uniprot
Match: A0A482RU04_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RU04_9ARCH)

HSP 1 Score: 140 bits (354), Expect = 3.600e-40
Identity = 66/98 (67.35%), Postives = 82/98 (83.67%), Query Frame = 1 
Query:   49 QVVTPWAVESDSDGIDYDKLVVSFGSRLITEDLIAKVERLTGRRAHRFLRRGLFFSHRDLGELLARVECGEKFYLYTGRGPSSEALHLGHLVPFHFTR 342
            QVV PW VES+   IDYD+L+ +FGS+ + EDLI ++ER+TG++ HRFLRRG+FFSHRDL +LL   E G+KFYLYTGRGPSSEALHLGHL+PF FT+
Sbjct:   76 QVVDPWTVESEG-AIDYDRLIHTFGSQRLGEDLIERMERVTGKKVHRFLRRGIFFSHRDLHQLLDLYEAGQKFYLYTGRGPSSEALHLGHLIPFQFTK 172
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BLAST of mRNA_P-wetherbeei_contig18472.1.1 vs. uniprot
Match: A0A812N6D3_9DINO (Tryptophan--tRNA ligase n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A812N6D3_9DINO)

HSP 1 Score: 146 bits (369), Expect = 1.820e-39
Identity = 70/98 (71.43%), Postives = 81/98 (82.65%), Query Frame = 1 
Query:   49 QVVTPWAVESDSDGIDYDKLVVSFGSRLITEDLIAKVERLTGRRAHRFLRRGLFFSHRDLGELLARVECGEKFYLYTGRGPSSEALHLGHLVPFHFTR 342
            QVVTPW VE+  DG+DYDKL+ +FG + IT + I +VERLTG+RAHRFLRRGLFFSHRDL  LL   E GE FY+YTGRGPSSE+LHLGHLVPF FT+
Sbjct:  105 QVVTPWEVEAGEDGVDYDKLIETFGCQPITAEQIERVERLTGKRAHRFLRRGLFFSHRDLDSLLDAYEKGEPFYIYTGRGPSSESLHLGHLVPFLFTK 202
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BLAST of mRNA_P-wetherbeei_contig18472.1.1 vs. uniprot
Match: A0A5A8D7J9_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D7J9_CAFRO)

HSP 1 Score: 144 bits (364), Expect = 5.270e-39
Identity = 68/98 (69.39%), Postives = 79/98 (80.61%), Query Frame = 1 
Query:   49 QVVTPWAVESDSDGIDYDKLVVSFGSRLITEDLIAKVERLTGRRAHRFLRRGLFFSHRDLGELLARVECGEKFYLYTGRGPSSEALHLGHLVPFHFTR 342
            QV+ PWAVE+   GIDYDKLV  FG  +ITED++ ++E +T RRAHRFLRRG+FF+HRDL  LL R   GE FYLYTGRGPSSEALHLGHL+PF FTR
Sbjct:  257 QVINPWAVEAGEGGIDYDKLVRDFGCSVITEDIVTRIENVTKRRAHRFLRRGIFFTHRDLDLLLDRYCSGEPFYLYTGRGPSSEALHLGHLIPFEFTR 354
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BLAST of mRNA_P-wetherbeei_contig18472.1.1 vs. uniprot
Match: A0A1Q9EYM6_SYMMI (Tryptophan--tRNA ligase n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9EYM6_SYMMI)

HSP 1 Score: 146 bits (369), Expect = 1.370e-38
Identity = 70/98 (71.43%), Postives = 81/98 (82.65%), Query Frame = 1 
Query:   49 QVVTPWAVESDSDGIDYDKLVVSFGSRLITEDLIAKVERLTGRRAHRFLRRGLFFSHRDLGELLARVECGEKFYLYTGRGPSSEALHLGHLVPFHFTR 342
            QVVTPW VE+  DG+DYDKL+ +FG + IT + I +VERLTG+RAHRFLRRGLFFSHRDL  LL   E GE FY+YTGRGPSSE+LHLGHLVPF FT+
Sbjct:  381 QVVTPWEVEAGEDGVDYDKLIETFGCQPITAEQIERVERLTGKRAHRFLRRGLFFSHRDLDSLLDAYEKGEPFYIYTGRGPSSESLHLGHLVPFLFTK 478
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BLAST of mRNA_P-wetherbeei_contig18472.1.1 vs. uniprot
Match: A0A812RRH1_9DINO (Tryptophan--tRNA ligase n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812RRH1_9DINO)

HSP 1 Score: 146 bits (369), Expect = 1.640e-38
Identity = 70/98 (71.43%), Postives = 81/98 (82.65%), Query Frame = 1 
Query:   49 QVVTPWAVESDSDGIDYDKLVVSFGSRLITEDLIAKVERLTGRRAHRFLRRGLFFSHRDLGELLARVECGEKFYLYTGRGPSSEALHLGHLVPFHFTR 342
            QVVTPW VE+  DG+DYDKL+ +FG + IT + I +VERLTG+RAHRFLRRGLFFSHRDL  LL   E GE FY+YTGRGPSSE+LHLGHLVPF FT+
Sbjct:  328 QVVTPWEVEAGEDGVDYDKLIETFGCQPITAEQIERVERLTGKRAHRFLRRGLFFSHRDLDSLLDAYEKGEPFYIYTGRGPSSESLHLGHLVPFLFTK 425
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BLAST of mRNA_P-wetherbeei_contig18472.1.1 vs. uniprot
Match: A0A7S1UFR9_9STRA (Tryptophan--tRNA ligase (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UFR9_9STRA)

HSP 1 Score: 141 bits (356), Expect = 2.330e-38
Identity = 72/98 (73.47%), Postives = 79/98 (80.61%), Query Frame = 1 
Query:   49 QVVTPWAVESDSDGIDYDKLVVSFGSRLITEDLIAKVERLTGRRAHRFLRRGLFFSHRDLGELLARVECGEKFYLYTGRGPSSEALHLGHLVPFHFTR 342
            Q VTPW  E+D D  DYD LV SFGS  I ED+IA+VERLT RRAHRFLRRGLF+SHRDL +LL   E GEKFYLYTGRGPSSEALHLGHL+PF  T+
Sbjct:   42 QEVTPWTAEAD-DQFDYDVLVESFGSFYIEEDIIARVERLTNRRAHRFLRRGLFYSHRDLRQLLDLYERGEKFYLYTGRGPSSEALHLGHLIPFTLTK 138
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18472.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZE99_9STRA1.480e-4277.55Tryptophan--tRNA ligase n=1 Tax=Tribonema minus Ta... [more]
W7TK77_9STRA2.800e-4166.67Tryptophan--tRNA ligase n=1 Tax=Nannochloropsis ga... [more]
D8LNT5_ECTSI3.160e-4173.47Tryptophan--tRNA ligase n=2 Tax=Ectocarpus TaxID=2... [more]
A0A4D9CRR7_9STRA4.020e-4165.79Tryptophan--tRNA ligase n=1 Tax=Nannochloropsis sa... [more]
A0A482RU04_9ARCH3.600e-4067.35Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A812N6D3_9DINO1.820e-3971.43Tryptophan--tRNA ligase n=2 Tax=Symbiodinium TaxID... [more]
A0A5A8D7J9_CAFRO5.270e-3969.39Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A1Q9EYM6_SYMMI1.370e-3871.43Tryptophan--tRNA ligase n=1 Tax=Symbiodinium micro... [more]
A0A812RRH1_9DINO1.640e-3871.43Tryptophan--tRNA ligase n=1 Tax=Symbiodinium sp. K... [more]
A0A7S1UFR9_9STRA2.330e-3873.47Tryptophan--tRNA ligase (Fragment) n=1 Tax=Phaeomo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18472contigP-wetherbeei_contig18472:317..1009 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LNT5
PFAMstRNA-synt_1b
Model size342
Max annot lvl2759|Eukaryota
KEGG rclassRC00055,RC00523
KEGG koko:K01867
KEGG ReactionR03664
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
GOsGO:0001932,GO:0001933,GO:0003674,GO:0003824,GO:0004812,GO:0004830,GO:0004857,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006436,GO:0006469,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008285,GO:0009058,GO:0009059,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010563,GO:0010604,GO:0010605,GO:0010628,GO:0010835,GO:0016070,GO:0016874,GO:0016875,GO:0019207,GO:0019210,GO:0019220,GO:0019222,GO:0019538,GO:0019752,GO:0019899,GO:0019900,GO:0019901,GO:0019904,GO:0022603,GO:0030234,GO:0031323,GO:0031324,GO:0031334,GO:0031399,GO:0031400,GO:0032268,GO:0032269,GO:0032991,GO:0033673,GO:0034641,GO:0034645,GO:0034660,GO:0042127,GO:0042325,GO:0042326,GO:0042802,GO:0042803,GO:0043038,GO:0043039,GO:0043043,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043254,GO:0043436,GO:0043549,GO:0043603,GO:0043604,GO:0044087,GO:0044089,GO:0044092,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0045765,GO:0045859,GO:0045936,GO:0046483,GO:0046983,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051174,GO:0051239,GO:0051246,GO:0051248,GO:0051338,GO:0051348,GO:0060255,GO:0065007,GO:0065009,GO:0071704,GO:0080090,GO:0090304,GO:0098772,GO:0140098,GO:0140101,GO:1901342,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:2000026
Exons2
Evalue5.18e-42
EggNOG OGsCOG0180@1|root,KOG2145@2759|Eukaryota
EC6.1.1.2
Descriptiontryptophanyl-tRNA aminoacylation
Cds size342
COG categoryJ
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186147.1366525-CDS-P-wetherbeei_contig18472:316..5021683186147.1366525-CDS-P-wetherbeei_contig18472:316..502Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18472 317..502 -
1683186147.1503334-CDS-P-wetherbeei_contig18472:853..10091683186147.1503334-CDS-P-wetherbeei_contig18472:853..1009Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18472 854..1009 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18472.1.1prot_P-wetherbeei_contig18472.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18472 317..1009 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18472.1.1

>prot_P-wetherbeei_contig18472.1.1 ID=prot_P-wetherbeei_contig18472.1.1|Name=mRNA_P-wetherbeei_contig18472.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=114bp
KQENGASSSGGGGGGGQVVTPWAVESDSDGIDYDKLVVSFGSRLITEDLI
AKVERLTGRRAHRFLRRGLFFSHRDLGELLARVECGEKFYLYTGRGPSSE
ALHLGHLVPFHFTR
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mRNA from alignment at P-wetherbeei_contig18472:317..1009-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18472.1.1 ID=mRNA_P-wetherbeei_contig18472.1.1|Name=mRNA_P-wetherbeei_contig18472.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=693bp|location=Sequence derived from alignment at P-wetherbeei_contig18472:317..1009- (Phaeothamnion wetherbeei SAG_119_79)
AAGCAGGAGAACGGCGCGAGTAGCTCTGGCGGCGGCGGGGGCGGAGGGCA
GGTGGTGACGCCGTGGGCGGTGGAGTCGGACAGCGACGGCATCGACTACG
ACAAACTCGTCGTCTCCTTCGGCTCCCGCCTCATTACCGAGGACCTCATC
GCCAAGGTCAATCCGTCGTATCTTTGTTGATTCTTTCGACAATTGATCCG
AGGTTCCATCGGTCGGCTCCGGCCGGGTTACCTGCAGTGAGGTCTTTCGT
CGTTTCCTTTTACTTCCCCTGCGCATGCACTCCCTAGTACTCTGTTCCTT
TGACCTGCGTTTCATGTGTCGGTGTGTTTGAAGAAAAGTCCAGCATGACG
ACATGTCCAGGGTATCTTTTAGATTATCATGTTTTGCTCAGCAGCTTGCG
CTTCTTCGAACTCTCTGGAAGTTTGCAACCAAACCGACCAGGCGACCTCA
AATGCCGAACTATCATCCTTCTCTGCCCTACCGCTGCCGTGGCGCACACG
GCCACAGGTGGAGCGATTGACGGGGCGGCGGGCGCACCGCTTCCTGCGGC
GCGGCCTCTTCTTCTCCCACCGCGACCTCGGCGAGCTGCTGGCCCGCGTG
GAGTGCGGTGAGAAGTTCTACCTCTACACCGGGCGGGGCCCGTCGTCCGA
GGCGCTGCACTTGGGCCACCTCGTGCCCTTCCACTTTACAAGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18472:317..1009-

>mRNA_P-wetherbeei_contig18472.1.1 ID=mRNA_P-wetherbeei_contig18472.1.1|Name=mRNA_P-wetherbeei_contig18472.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=342bp|location=Sequence derived from alignment at P-wetherbeei_contig18472:317..1009- (Phaeothamnion wetherbeei SAG_119_79)
AAGCAGGAGAACGGCGCGAGTAGCTCTGGCGGCGGCGGGGGCGGAGGGCA
GGTGGTGACGCCGTGGGCGGTGGAGTCGGACAGCGACGGCATCGACTACG
ACAAACTCGTCGTCTCCTTCGGCTCCCGCCTCATTACCGAGGACCTCATC
GCCAAGGTGGAGCGATTGACGGGGCGGCGGGCGCACCGCTTCCTGCGGCG
CGGCCTCTTCTTCTCCCACCGCGACCTCGGCGAGCTGCTGGCCCGCGTGG
AGTGCGGTGAGAAGTTCTACCTCTACACCGGGCGGGGCCCGTCGTCCGAG
GCGCTGCACTTGGGCCACCTCGTGCCCTTCCACTTTACAAGG
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