mRNA_P-wetherbeei_contig18471.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18471.2.1
Unique NamemRNA_P-wetherbeei_contig18471.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig18471.2.1 vs. uniprot
Match: A0A6I3F057_9ACTN (MarR family transcriptional regulator n=3 Tax=root TaxID=1 RepID=A0A6I3F057_9ACTN)

HSP 1 Score: 170 bits (430), Expect = 2.470e-51
Identity = 90/143 (62.94%), Postives = 107/143 (74.83%), Query Frame = 1
Query:   43 WLSADEMRAWRNFVETMGTLLPAMEADLVAHGLTMGDYEVLVHLSEAEHRRMRMCDLATALRLSPSGLTRRLDGLVKAKLVTRESCAADRRVMWAALTAAGWERMEEAAPTHVASVRRHFLAGLTPAMIEAIGDAFTIVRERL 471
            WL++ E  AWRNF+ T+  L  A+EADL  +GLT+GDYEVLV LSEAE  R+RMCDLA ALRLSPSGLTRRLDGLVK   V RES A+DRRVM+A LT  G  +M+EAAP HVASVRRH L  +    ++ +GD F +VRE L
Sbjct:    5 WLTSAEQTAWRNFITTLPDLTAALEADLAPYGLTLGDYEVLVFLSEAEEDRLRMCDLAGALRLSPSGLTRRLDGLVKVGWVERESSASDRRVMYAHLTRTGRSKMDEAAPHHVASVRRHLLNPIGDEGVQKLGDLFLLVREHL 147          
BLAST of mRNA_P-wetherbeei_contig18471.2.1 vs. uniprot
Match: A0A3C2B2N1_9ACTN (MarR family transcriptional regulator n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C2B2N1_9ACTN)

HSP 1 Score: 166 bits (420), Expect = 7.910e-50
Identity = 86/149 (57.72%), Postives = 109/149 (73.15%), Query Frame = 1
Query:   43 WLSADEMRAWRNFVETMGTLLPAMEADLVAHGLTMGDYEVLVHLSEAEHRRMRMCDLATALRLSPSGLTRRLDGLVKAKLVTRESCAADRRVMWAALTAAGWERMEEAAPTHVASVRRHFLAGLTPAMIEAIGDAFTIVRERLAAGQTA 489
            WL+  E  +WRNF+ ++  L+ A+EADL  HG+TMGDYEVLV LSEA+ +RMRMCDLA AL+LSPSGLTRRLDG+V+   V R SC++DRRV WA LT  G ++M++ AP HVASVRRH L  L P  ++ +G  F  VR+ L A  TA
Sbjct:    4 WLTEREQASWRNFIMSVHDLMAALEADLAPHGITMGDYEVLVWLSEADEQRMRMCDLAGALQLSPSGLTRRLDGMVRQGWVQRASCSSDRRVAWAQLTDTGLQKMQQVAPAHVASVRRHVLDPLGPKGVDQLGALFGRVRDHLQALPTA 152          
BLAST of mRNA_P-wetherbeei_contig18471.2.1 vs. uniprot
Match: A0A7X9KM68_9ACTN (MarR family transcriptional regulator n=2 Tax=Actinobacteria TaxID=201174 RepID=A0A7X9KM68_9ACTN)

HSP 1 Score: 165 bits (417), Expect = 2.330e-49
Identity = 88/149 (59.06%), Postives = 105/149 (70.47%), Query Frame = 1
Query:   43 WLSADEMRAWRNFVETMGTLLPAMEADLVAHGLTMGDYEVLVHLSEAEHRRMRMCDLATALRLSPSGLTRRLDGLVKAKLVTRESCAADRRVMWAALTAAGWERMEEAAPTHVASVRRHFLAGLTPAMIEAIGDAFTIVRERLAAGQTA 489
            WL   E  AWRNF+ T+  L  A EADL  HG+TMGDYEVLV LSEA  +RMRMCDLA ALRL PSGLTRRLDGLVKA  V R +C++DRRVM+A LT+ G  +M+ AAP HV SVRRHFL  L    ++ +   FT++R  L   Q+A
Sbjct:    5 WLDDSEQTAWRNFITTLPDLSAAFEADLAPHGITMGDYEVLVFLSEAPDQRMRMCDLAAALRLPPSGLTRRLDGLVKAGWVERSACSSDRRVMYAHLTSTGLAKMDAAAPDHVDSVRRHFLTPLGDDGVQQLSALFTLIRAHLHKLQSA 153          
BLAST of mRNA_P-wetherbeei_contig18471.2.1 vs. uniprot
Match: A0A539E785_9ACTN (Putative MarR family transcriptional regulator n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A539E785_9ACTN)

HSP 1 Score: 158 bits (400), Expect = 1.290e-46
Identity = 88/163 (53.99%), Postives = 106/163 (65.03%), Query Frame = 1
Query:    1 LAPMATKTDAPTEGWLSADEMRAWRNFVETMGTLLPAMEADLVAHGLTMGDYEVLVHLSEAEHRRMRMCDLATALRLSPSGLTRRLDGLVKAKLVTRESCAADRRVMWAALTAAGWERMEEAAPTHVASVRRHFLAGLTPAMIEAIGDAFTIVRERLAAGQTA 489
            + P A  T+     WL   EM AWR++++ +  L  A+EADLV  GLTMGDYEVLV LS+   RRMRMCDLA  L LSPSGLTRRLDGLV   LV+RE+   DRRVM A LT  G+  +E AAP H+  VRRHF+  LT   + A+  AFT VR  LA   T+
Sbjct:    1 MPPAAASTETAVTRWLDPTEMIAWRSYIDCINDLQHALEADLVPFGLTMGDYEVLVRLSDRSDRRMRMCDLAGQLGLSPSGLTRRLDGLVSTGLVSREASDDDRRVMLAVLTDDGYAVLERAAPFHLRGVRRHFIDLLTAGEVRAVASAFTKVRAALAGQHTS 163          
BLAST of mRNA_P-wetherbeei_contig18471.2.1 vs. uniprot
Match: A0A848UK39_9ACTN (MarR family transcriptional regulator n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A848UK39_9ACTN)

HSP 1 Score: 155 bits (393), Expect = 1.090e-45
Identity = 89/152 (58.55%), Postives = 106/152 (69.74%), Query Frame = 1
Query:   16 TKTDAPTEGWLSADEMRAWRNFVETMGTLLPAMEADLVAHGLTMGDYEVLVHLSEAEHRRMRMCDLATALRLSPSGLTRRLDGLVKAKLVTRESCAADRRVMWAALTAAGWERMEEAAPTHVASVRRHFLAGLTPAMIEAIGDAFTIVRERL 471
            T TDAP   WLSADEM AWRNF+ET   L+ A+E DL   GLT+GDY+VLV+L+EA+ ++MRMCDLA  L+LSPSGLTRRLDGLVK+  V R +   DRRVM AALT AG  ++ EAAP HV SVRR  +  L      AI  AF  +R  L
Sbjct:    2 TVTDAP---WLSADEMAAWRNFIETQADLITAIENDLAPSGLTLGDYQVLVYLTEADDQQMRMCDLADMLQLSPSGLTRRLDGLVKSGWVERRNSQTDRRVMLAALTDAGRSQLAEAAPGHVVSVRRRMIDVLDADDHAAIARAFGKIRAAL 150          
BLAST of mRNA_P-wetherbeei_contig18471.2.1 vs. uniprot
Match: A0A6N2DHS7_9ACTN (MarR family transcriptional regulator n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A6N2DHS7_9ACTN)

HSP 1 Score: 155 bits (391), Expect = 2.400e-45
Identity = 84/154 (54.55%), Postives = 102/154 (66.23%), Query Frame = 1
Query:   10 MATKTDAPTEGWLSADEMRAWRNFVETMGTLLPAMEADLVAHGLTMGDYEVLVHLSEAEHRRMRMCDLATALRLSPSGLTRRLDGLVKAKLVTRESCAADRRVMWAALTAAGWERMEEAAPTHVASVRRHFLAGLTPAMIEAIGDAFTIVRERL 471
            MAT  +  T  WLS  E  AWR ++ET+G L  A+EADL   GL +GDY+VLVHLSEA  RR+RMCDLA  L+LSPSGLTRRLDGLV+  LV R+    DRRVM A LT  G + +E AAP HV SVRRH    L P  ++A+   F  ++  L
Sbjct:    1 MATAPEVRTR-WLSNAEQTAWRAYIETVGDLTAALEADLAPTGLNLGDYQVLVHLSEAPDRRLRMCDLAEVLQLSPSGLTRRLDGLVRGGLVERQGSPTDRRVMLAVLTDHGLDTLEAAAPVHVESVRRHIFDRLDPGQVDAMASIFRAIQHGL 153          
BLAST of mRNA_P-wetherbeei_contig18471.2.1 vs. uniprot
Match: A0A6I3WPP5_9ACTN (MarR family transcriptional regulator n=2 Tax=root TaxID=1 RepID=A0A6I3WPP5_9ACTN)

HSP 1 Score: 154 bits (390), Expect = 3.110e-45
Identity = 83/146 (56.85%), Postives = 103/146 (70.55%), Query Frame = 1
Query:   34 TEGWLSADEMRAWRNFVETMGTLLPAMEADLVAHGLTMGDYEVLVHLSEAEHRRMRMCDLATALRLSPSGLTRRLDGLVKAKLVTRESCAADRRVMWAALTAAGWERMEEAAPTHVASVRRHFLAGLTPAMIEAIGDAFTIVRERL 471
            T G L+A EMRAWR + ET+  L  A+EADLV HGL++GDYEVLV LSE+   R+RMCDL+  L LSPSGLTRRLDGLVKA  V R    +DRRVM+A++T+ G   ++ A P HV SVR H +  LTPA + A+GD F  V + L
Sbjct:    2 TSGRLTATEMRAWRAYAETIDHLRAALEADLVPHGLSLGDYEVLVILSESVDGRLRMCDLSNELGLSPSGLTRRLDGLVKADYVARTQGTSDRRVMYASITSEGRHALQRAVPDHVRSVRTHLIDRLTPAQVTALGDIFRAVGDGL 147          
BLAST of mRNA_P-wetherbeei_contig18471.2.1 vs. uniprot
Match: A0A7K1B686_9ACTN (MarR family transcriptional regulator n=2 Tax=root TaxID=1 RepID=A0A7K1B686_9ACTN)

HSP 1 Score: 157 bits (398), Expect = 3.830e-45
Identity = 92/163 (56.44%), Postives = 110/163 (67.48%), Query Frame = 1
Query:    1 LAPMATKT-DAPTEGWLSADEMRAWRNFVETMGTLLPAMEADLVAHGLTMGDYEVLVHLSEAEHRRMRMCDLATALRLSPSGLTRRLDGLVKAKLVTRESCAADRRVMWAALTAAGWERMEEAAPTHVASVRRHFLAGLTPAMIEAIGDAFTIVRERLAAGQT 486
            +AP   +T D P   WL   EM+AWR +V+T+  L  A+EAD+   GLTMGDYEVLV LSE   R+ RMCDLA  LRLSPSGLTRRLDGLV+A LV+RE    DRRVM A LT AG++ +  AAP HV  VRRH +  L    +EA+  AFT VR+ L A QT
Sbjct:   94 MAPELPQTIDQPR--WLDPVEMQAWRAYVDTVYALQHALEADVAPFGLTMGDYEVLVRLSEQSERQQRMCDLAAELRLSPSGLTRRLDGLVRAGLVSREPSPDDRRVMLAVLTDAGYDLLVRAAPHHVEGVRRHLIDQLDRREVEALASAFTKVRDGLLASQT 254          
BLAST of mRNA_P-wetherbeei_contig18471.2.1 vs. uniprot
Match: A0A7W1CNX4_9ACTN (MarR family transcriptional regulator n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W1CNX4_9ACTN)

HSP 1 Score: 152 bits (385), Expect = 1.950e-44
Identity = 85/148 (57.43%), Postives = 100/148 (67.57%), Query Frame = 1
Query:   43 WLSADEMRAWRNFVETMGTLLPAMEADLVAHGLTMGDYEVLVHLSEAEHRRMRMCDLATALRLSPSGLTRRLDGLVKAKLVTRESCAADRRVMWAALTAAGWERMEEAAPTHVASVRRHFLAGLTPAMIEAIGDAFTIVRERLAAGQT 486
            WL  +EMRAWR FVET   LL A EADL AH LT+GDY+VLV+LSEA+ + MRMCDLA  LRLSPSGLTRRLDGLV++  V R   A DRRVM A LT  G   ++EAAPTHV SVRR     + P  +  +   F  V E L A ++
Sbjct:    7 WLDGEEMRAWRAFVETTHDLLNAFEADLAAHDLTLGDYQVLVYLSEADGQAMRMCDLAGRLRLSPSGLTRRLDGLVRSGDVVRRPSATDRRVMLAQLTETGLRHLQEAAPTHVRSVRRRLFDHVEPDDVATLARMFGAVGEGLEASRS 154          
BLAST of mRNA_P-wetherbeei_contig18471.2.1 vs. uniprot
Match: A0A7Y2EVH6_9ACTN (MarR family transcriptional regulator n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A7Y2EVH6_9ACTN)

HSP 1 Score: 152 bits (383), Expect = 5.330e-44
Identity = 87/159 (54.72%), Postives = 106/159 (66.67%), Query Frame = 1
Query:   10 MATKTDAPTEGWLSADEMRAWRNFVETMGTLLPAMEADLVAHGLTMGDYEVLVHLSEAEHRRMRMCDLATALRLSPSGLTRRLDGLVKAKLVTRESCAADRRVMWAALTAAGWERMEEAAPTHVASVRRHFLAGLTPAMIEAIGDAFTIVRERLAAGQT 486
            M+T+TD     WL+A EMRAWR ++ET   L  A+E DL   GLT+GDY+VLV+LSEAE R +RM DLA  L+LSPSGLTRRLDGLV    VTR   A DRRVM A LT +G + +E  AP HVASVRRH    L  A +EA+   F+ +   L+A  T
Sbjct:    1 MSTETDV---AWLTAAEMRAWRAYIETGADLTNALERDLAEVGLTLGDYQVLVYLSEAEGRALRMTDLAEMLQLSPSGLTRRLDGLVAGGHVTRRGSADDRRVMMAVLTESGRDVLERCAPHHVASVRRHIFDHLDDAQVEAMASIFSAIAAGLSADDT 156          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18471.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6I3F057_9ACTN2.470e-5162.94MarR family transcriptional regulator n=3 Tax=root... [more]
A0A3C2B2N1_9ACTN7.910e-5057.72MarR family transcriptional regulator n=1 Tax=Acid... [more]
A0A7X9KM68_9ACTN2.330e-4959.06MarR family transcriptional regulator n=2 Tax=Acti... [more]
A0A539E785_9ACTN1.290e-4653.99Putative MarR family transcriptional regulator n=1... [more]
A0A848UK39_9ACTN1.090e-4558.55MarR family transcriptional regulator n=1 Tax=Ilum... [more]
A0A6N2DHS7_9ACTN2.400e-4554.55MarR family transcriptional regulator n=1 Tax=Ilum... [more]
A0A6I3WPP5_9ACTN3.110e-4556.85MarR family transcriptional regulator n=2 Tax=root... [more]
A0A7K1B686_9ACTN3.830e-4556.44MarR family transcriptional regulator n=2 Tax=root... [more]
A0A7W1CNX4_9ACTN1.950e-4457.43MarR family transcriptional regulator n=1 Tax=Acid... [more]
A0A7Y2EVH6_9ACTN5.330e-4454.72MarR family transcriptional regulator n=1 Tax=Ilum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18471contigP-wetherbeei_contig18471:749..1240 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1313172.YM304_29720
PFAMsMarR_2
Model size492
Max annot lvl84992|Acidimicrobiia
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.19e-41
EggNOG OGsCOG1846@1|root,COG1846@2|Bacteria,2H64I@201174|Actinobacteria,4CNCT@84992|Acidimicrobiia
Descriptionhelix_turn_helix multiple antibiotic resistance protein
Cds size483
COG categoryK
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186147.0809793-CDS-P-wetherbeei_contig18471:748..12311683186147.0809793-CDS-P-wetherbeei_contig18471:748..1231Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18471 749..1231 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186147.0927818-UTR-P-wetherbeei_contig18471:1231..12401683186147.0927818-UTR-P-wetherbeei_contig18471:1231..1240Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig18471 1232..1240 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18471.2.1prot_P-wetherbeei_contig18471.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18471 749..1231 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18471.2.1

>prot_P-wetherbeei_contig18471.2.1 ID=prot_P-wetherbeei_contig18471.2.1|Name=mRNA_P-wetherbeei_contig18471.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=161bp
MATKTDAPTEGWLSADEMRAWRNFVETMGTLLPAMEADLVAHGLTMGDYE
VLVHLSEAEHRRMRMCDLATALRLSPSGLTRRLDGLVKAKLVTRESCAAD
RRVMWAALTAAGWERMEEAAPTHVASVRRHFLAGLTPAMIEAIGDAFTIV
RERLAAGQTA*
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mRNA from alignment at P-wetherbeei_contig18471:749..1240-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18471.2.1 ID=mRNA_P-wetherbeei_contig18471.2.1|Name=mRNA_P-wetherbeei_contig18471.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=492bp|location=Sequence derived from alignment at P-wetherbeei_contig18471:749..1240- (Phaeothamnion wetherbeei SAG_119_79)
CTGGCACCCATGGCGACGAAGACGGATGCCCCAACCGAAGGCTGGCTGAG TGCCGACGAGATGCGCGCCTGGCGCAACTTCGTCGAGACGATGGGCACGC TCCTGCCGGCGATGGAAGCCGACCTCGTGGCCCACGGCCTCACGATGGGC GACTACGAAGTCCTCGTCCACCTCTCCGAAGCCGAGCACCGGCGGATGCG CATGTGCGATCTCGCCACCGCCCTGCGGCTTTCCCCGAGCGGCCTCACCC GCCGCCTCGACGGGTTGGTCAAGGCCAAGCTCGTCACCCGCGAGTCGTGC GCAGCCGATCGGCGCGTGATGTGGGCGGCGCTGACCGCCGCCGGCTGGGA GCGCATGGAGGAGGCCGCGCCGACGCACGTCGCCAGCGTTCGCCGCCACT TCCTCGCCGGCCTCACCCCGGCGATGATCGAGGCGATCGGCGATGCGTTC ACCATCGTGCGCGAACGCCTCGCCGCCGGGCAGACTGCCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18471:749..1240-

>mRNA_P-wetherbeei_contig18471.2.1 ID=mRNA_P-wetherbeei_contig18471.2.1|Name=mRNA_P-wetherbeei_contig18471.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=483bp|location=Sequence derived from alignment at P-wetherbeei_contig18471:749..1240- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGACGAAGACGGATGCCCCAACCGAAGGCTGGCTGAGTGCCGACGA
GATGCGCGCCTGGCGCAACTTCGTCGAGACGATGGGCACGCTCCTGCCGG
CGATGGAAGCCGACCTCGTGGCCCACGGCCTCACGATGGGCGACTACGAA
GTCCTCGTCCACCTCTCCGAAGCCGAGCACCGGCGGATGCGCATGTGCGA
TCTCGCCACCGCCCTGCGGCTTTCCCCGAGCGGCCTCACCCGCCGCCTCG
ACGGGTTGGTCAAGGCCAAGCTCGTCACCCGCGAGTCGTGCGCAGCCGAT
CGGCGCGTGATGTGGGCGGCGCTGACCGCCGCCGGCTGGGAGCGCATGGA
GGAGGCCGCGCCGACGCACGTCGCCAGCGTTCGCCGCCACTTCCTCGCCG
GCCTCACCCCGGCGATGATCGAGGCGATCGGCGATGCGTTCACCATCGTG
CGCGAACGCCTCGCCGCCGGGCAGACTGCCTGA
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