mRNA_P-wetherbeei_contig1847.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1847.3.1
Unique NamemRNA_P-wetherbeei_contig1847.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1847.3.1 vs. uniprot
Match: A0A7S1WT17_ALECA (Hypothetical protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1WT17_ALECA)

HSP 1 Score: 47.8 bits (112), Expect = 2.360e-5
Identity = 24/47 (51.06%), Postives = 32/47 (68.09%), Query Frame = 2 
Query:    8 PAQQARRQLRIALEYIALAERFPSHDQSTKTRAHLFKILHRLLSCPE 148
            P+  ARR LR+A E++ LAE FP   +   T++HLFKILHRLL   +
Sbjct:    3 PSAPARRMLRLAREFVDLAEAFPCALKYPPTKSHLFKILHRLLGADQ 49
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1847.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S1WT17_ALECA2.360e-551.06Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1847contigP-wetherbeei_contig1847:4112..4583 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size173
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size171
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186146.8038738-CDS-P-wetherbeei_contig1847:4113..41961683186146.8038738-CDS-P-wetherbeei_contig1847:4113..4196Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1847 4114..4196 -
1683186146.8126369-CDS-P-wetherbeei_contig1847:4495..45831683186146.8126369-CDS-P-wetherbeei_contig1847:4495..4583Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1847 4496..4583 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1847.3.1prot_P-wetherbeei_contig1847.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1847 4114..4583 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1847.3.1

>prot_P-wetherbeei_contig1847.3.1 ID=prot_P-wetherbeei_contig1847.3.1|Name=mRNA_P-wetherbeei_contig1847.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=57bp
AAPGAAGAAAAADRARVHRARGALPVARPEHQDAGAPLQDPAPPPFVPGE
PRPAGRA
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mRNA from alignment at P-wetherbeei_contig1847:4112..4583-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1847.3.1 ID=mRNA_P-wetherbeei_contig1847.3.1|Name=mRNA_P-wetherbeei_contig1847.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=472bp|location=Sequence derived from alignment at P-wetherbeei_contig1847:4112..4583- (Phaeothamnion wetherbeei SAG_119_79)
GCTGCCCCCGGCGCAGCAGGCGCGGCGGCAGCTGCGGATCGCGCTCGAGT
ACATCGCGCTCGCGGAGCGCTTCCCGTCGCACGACCAGGCAATGAATGGG
GTTGCGATTCCTGTCTCGTTATTTGGGAAAGCTGATGCTATTTTTTGGAC
CAGAGAGTCGGAACTGCTCTGTGCGTTTGCCGGGCCCCGGCAGCTAGAGC
TGTGCGTCCGTTTTCTAAATTGATGACGCCTTTCGCACAGGGTAGAAAGG
CGGGCTCCTTTTGAACACGGAATCTAAGTGCGGCTTTTCGCTATTTTTCG
ATCTCTCCGGAGCACAAAGCCGACCGATGGCCCGGCAATGTCCCCGCTTT
CACACACCCGTTAAAGCCCGCGCTGCCCAAAAAGCAGAGCACCAAGACGC
GGGCGCACCTCTTCAAGATCCTGCACCGCCTCCTTTCGTGCCCGGAGAAC
CACGACCTGCGGGCAGAGCTGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1847:4112..4583-

>mRNA_P-wetherbeei_contig1847.3.1 ID=mRNA_P-wetherbeei_contig1847.3.1|Name=mRNA_P-wetherbeei_contig1847.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=171bp|location=Sequence derived from alignment at P-wetherbeei_contig1847:4112..4583- (Phaeothamnion wetherbeei SAG_119_79)
GCTGCCCCCGGCGCAGCAGGCGCGGCGGCAGCTGCGGATCGCGCTCGAGT
ACATCGCGCTCGCGGAGCGCTTCCCGTCGCACGACCAGAGCACCAAGACG
CGGGCGCACCTCTTCAAGATCCTGCACCGCCTCCTTTCGTGCCCGGAGAA
CCACGACCTGCGGGCAGAGCT
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