mRNA_P-wetherbeei_contig18455.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18455.2.1
Unique NamemRNA_P-wetherbeei_contig18455.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig18455.2.1 vs. uniprot
Match: A0A6J7NL11_9ZZZZ (DNA helicase n=2 Tax=root TaxID=1 RepID=A0A6J7NL11_9ZZZZ)

HSP 1 Score: 111 bits (278), Expect = 7.840e-27
Identity = 45/87 (51.72%), Postives = 67/87 (77.01%), Query Frame = 1
Query:    1 MGTMVPAGFPMSLLKNDAERLVVNELCRQLSDEWLILPDVGITGPRDRQIDLVIAHPDEGIAIVEVKGHRAKVVEGMWCANGKPLEP 261
            MG +VP  FP++ L ND ER+VV     +L+D WL++PDVG++G RDRQ+D+V+AH  EG+A+VEVKGHR ++++G+W +NG  + P
Sbjct:   14 MGILVPENFPLAQLANDEERMVVEAFRDRLTDGWLVIPDVGLSGDRDRQMDIVLAHEREGVAVVEVKGHRPEILQGVWTSNGSAMSP 100          
BLAST of mRNA_P-wetherbeei_contig18455.2.1 vs. uniprot
Match: A0A6C7EC87_ILUCY (DNA helicase n=1 Tax=Ilumatobacter coccineus (strain NBRC 103263 / KCTC 29153 / YM16-304) TaxID=1313172 RepID=A0A6C7EC87_ILUCY)

HSP 1 Score: 99.8 bits (247), Expect = 1.420e-22
Identity = 47/90 (52.22%), Postives = 67/90 (74.44%), Query Frame = 1
Query:    1 MGTMVPAGFPMSLLKNDAERLVVNELCRQLSDEWLILPDVGITGP-RDRQIDLVIAHPDEGIAIVEVKGH-RAKVVEGMWCANGKPLEPQ 264
            MG ++P  FPM  L NDAER VV  L  +L+D W I+PDVGI G  ++ Q+D+V+AH  EG+A++EVKGH RA + +G+W ++G+PL+PQ
Sbjct:    1 MGILLPENFPMESLVNDAEREVVATLVDRLTDGWHIIPDVGIRGAGQEYQMDIVVAHEREGVAVIEVKGHTRATLEQGVWMSDGRPLQPQ 90          
BLAST of mRNA_P-wetherbeei_contig18455.2.1 vs. uniprot
Match: UPI001E43A38C (NERD domain-containing protein n=1 Tax=Rhabdothermincola sp. EGI L10124 TaxID=2903142 RepID=UPI001E43A38C)

HSP 1 Score: 95.1 bits (235), Expect = 6.360e-21
Identity = 43/90 (47.78%), Postives = 60/90 (66.67%), Query Frame = 1
Query:    1 MGTMVPAGFPMSLLKNDAERLVVNELCRQLSDEWLILPDVGI-TGPRDRQIDLVIAHPDEGIAIVEVKGHRAKVVEGMWCAN-GKPLEPQ 264
            MGT++P  F +  L NDAER+VV  L   L D WL++PDVG+ T  +D Q D+V+ HP+ G+ ++EVKGHR  + +G W    G PL+PQ
Sbjct:    1 MGTLIPEDFDLDTLANDAERVVVRALVDGLFDSWLVIPDVGLHTKAKDHQSDIVLVHPEMGVVLLEVKGHRMAIRQGQWVGQEGTPLKPQ 90          
BLAST of mRNA_P-wetherbeei_contig18455.2.1 vs. uniprot
Match: A0A6J7KTR8_9ZZZZ (DNA helicase n=2 Tax=root TaxID=1 RepID=A0A6J7KTR8_9ZZZZ)

HSP 1 Score: 87.4 bits (215), Expect = 3.420e-18
Identity = 41/90 (45.56%), Postives = 57/90 (63.33%), Query Frame = 1
Query:    1 MGTMVPAGFPMSLLKNDAERLVVNELCRQLSDEWLILPDVGITGPRDR-QIDLVIAHPDEGIAIVEVKGHRAKVVEGMWCAN-GKPLEPQ 264
            MG ++PA FPM  L N+AER VV+     L   WLI+P++G+     + + D+V+ HPD G+ +VEVKGHR  + EG+W    G PL PQ
Sbjct:   53 MGRIIPADFPMEQLANNAERTVVSSFITGLYSNWLIIPNLGMRDSEGQHETDIVLIHPDMGVVLVEVKGHRVSIREGIWHGQEGTPLNPQ 142          
BLAST of mRNA_P-wetherbeei_contig18455.2.1 vs. uniprot
Match: A0A7X7D2C3_9ACTN (DNA helicase n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7X7D2C3_9ACTN)

HSP 1 Score: 80.5 bits (197), Expect = 9.240e-16
Identity = 39/84 (46.43%), Postives = 52/84 (61.90%), Query Frame = 1
Query:    1 MGTMVPAGFPMSLLKNDAERLVVNELCRQLSDEWLILPDVGI-TGPRDRQIDLVIAHPDEGIAIVEVKGHRAKVVEGMWCANGK 249
            M  +VP GF ++ L NDAER VV+ L R L D WL++P VGI +  RD +ID+V+ H   G+  +EVK HR  V +G W    K
Sbjct:    1 MAVLVPEGFSLASLVNDAERDVVSSLLRGLDDSWLVMPSVGIRSDTRDHEIDVVLVHQRFGVIALEVKAHRVSVDKGQWRFGAK 84          
BLAST of mRNA_P-wetherbeei_contig18455.2.1 vs. uniprot
Match: UPI001CE3D75E (NERD domain-containing protein n=1 Tax=Actinotalea sp. Marseille-Q4924 TaxID=2866571 RepID=UPI001CE3D75E)

HSP 1 Score: 52.4 bits (124), Expect = 7.220e-6
Identity = 29/76 (38.16%), Postives = 43/76 (56.58%), Query Frame = 1
Query:   49 DAERLVVNELCRQLSDEWLILPDVGIT-GPRDRQIDLVIAHPDEGIAIVEVKGHRAKVVEGMWCANG----KPLEP 261
            DAER V + L  QL D+  +   V +  G  +R+IDL++A P  G+A+VEVKG      +G W  +G     P++P
Sbjct:   17 DAERTVWDHLRDQLPDDAALFARVNLLHGSHEREIDLLVAWPGVGLAVVEVKGGHVTYRDGQWWQSGGADTHPIDP 92          
BLAST of mRNA_P-wetherbeei_contig18455.2.1 vs. uniprot
Match: A0A3N4TC31_9STAP (DNA helicase n=2 Tax=Salinicoccus TaxID=45669 RepID=A0A3N4TC31_9STAP)

HSP 1 Score: 51.2 bits (121), Expect = 1.850e-5
Identity = 25/61 (40.98%), Postives = 38/61 (62.30%), Query Frame = 1
Query:   43 KNDAERLVVNELCRQLSDEWLILPDVGITG--------PRDRQIDLVIAHPDEGIAIVEVK 201
            ++  ERL+ NEL +QLSDE++I   V + G        P D++ID ++ HP +GI  +EVK
Sbjct:   16 RSRGERLLYNELKKQLSDEYVIFHSVNVLGRARTNKGYPVDKEIDFIVFHPQKGIICIEVK 76          
BLAST of mRNA_P-wetherbeei_contig18455.2.1 vs. uniprot
Match: A0A0D6QJK7_9DELT (Nuclease-related domain protein n=1 Tax=Anaeromyxobacter sp. PSR-1 TaxID=1300915 RepID=A0A0D6QJK7_9DELT)

HSP 1 Score: 50.1 bits (118), Expect = 4.700e-5
Identity = 25/74 (33.78%), Postives = 41/74 (55.41%), Query Frame = 1
Query:   43 KNDAERLVVNELCRQLSDEWLILPDVGITGPRDR--QIDLVIAHPDEGIAIVEVKGHRAKVVEGMWCANGKPLE 258
            +++AER V   L + L   W     + I   ++   + D V+AHP+ G+ ++EVKG R +  +G W  NG PL+
Sbjct:   16 RSEAERTVWRALAKGLPPGWTAWHSLRIRDGKNLLGEGDFVLAHPERGLLVLEVKGGRIEQRDGRWFTNGVPLD 89          
BLAST of mRNA_P-wetherbeei_contig18455.2.1 vs. uniprot
Match: A0A537Y2D1_9ACTN (DNA helicase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A537Y2D1_9ACTN)

HSP 1 Score: 50.1 bits (118), Expect = 4.710e-5
Identity = 29/73 (39.73%), Postives = 40/73 (54.79%), Query Frame = 1
Query:    1 MGTMVPAGFPMSLLKNDAERLVVNELCRQLSDEWLILPDV-----GITGPRDRQIDLVIAHPDEGIAIVEVKG 204
            M  MVP  FPM    + AER +     RQL D++++   V     G  GP   + D VIAHP++G+ +VE KG
Sbjct:    1 MARMVP--FPMLPTDSAAERRLYEGFLRQLDDQYVVYHSVDWVLAGRDGPIQGEADFVIAHPEDGLFVVEAKG 71          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18455.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6J7NL11_9ZZZZ7.840e-2751.72DNA helicase n=2 Tax=root TaxID=1 RepID=A0A6J7NL11... [more]
A0A6C7EC87_ILUCY1.420e-2252.22DNA helicase n=1 Tax=Ilumatobacter coccineus (stra... [more]
UPI001E43A38C6.360e-2147.78NERD domain-containing protein n=1 Tax=Rhabdotherm... [more]
A0A6J7KTR8_9ZZZZ3.420e-1845.56DNA helicase n=2 Tax=root TaxID=1 RepID=A0A6J7KTR8... [more]
A0A7X7D2C3_9ACTN9.240e-1646.43DNA helicase n=1 Tax=Acidimicrobiales bacterium Ta... [more]
UPI001CE3D75E7.220e-638.16NERD domain-containing protein n=1 Tax=Actinotalea... [more]
A0A3N4TC31_9STAP1.850e-540.98DNA helicase n=2 Tax=Salinicoccus TaxID=45669 RepI... [more]
A0A0D6QJK7_9DELT4.700e-533.78Nuclease-related domain protein n=1 Tax=Anaeromyxo... [more]
A0A537Y2D1_9ACTN4.710e-539.73DNA helicase n=1 Tax=Actinomycetia bacterium TaxID... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18455contigP-wetherbeei_contig18455:1088..1351 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1313172.YM304_40630
Model size264
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.33e-23
EggNOG OGsCOG0003@1|root,COG0210@1|root,COG0003@2|Bacteria,COG0210@2|Bacteria,2I7TU@201174|Actinobacteria
DescriptionAAA domain
Cds size264
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186146.5291793-CDS-P-wetherbeei_contig18455:1087..13511683186146.5291793-CDS-P-wetherbeei_contig18455:1087..1351Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18455 1088..1351 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18455.2.1prot_P-wetherbeei_contig18455.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18455 1088..1351 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18455.2.1

>prot_P-wetherbeei_contig18455.2.1 ID=prot_P-wetherbeei_contig18455.2.1|Name=mRNA_P-wetherbeei_contig18455.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=88bp
MGTMVPAGFPMSLLKNDAERLVVNELCRQLSDEWLILPDVGITGPRDRQI
DLVIAHPDEGIAIVEVKGHRAKVVEGMWCANGKPLEPQ
back to top

mRNA from alignment at P-wetherbeei_contig18455:1088..1351+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18455.2.1 ID=mRNA_P-wetherbeei_contig18455.2.1|Name=mRNA_P-wetherbeei_contig18455.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=264bp|location=Sequence derived from alignment at P-wetherbeei_contig18455:1088..1351+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGAACGATGGTGCCGGCGGGCTTCCCGATGTCGTTGCTCAAGAACGA CGCCGAACGCCTCGTCGTCAACGAGTTGTGTCGGCAGCTGTCCGACGAGT GGCTCATCCTCCCGGACGTCGGCATCACCGGACCGCGAGACCGGCAGATC GACCTCGTGATCGCTCATCCCGACGAGGGCATCGCCATCGTCGAAGTGAA GGGTCACCGCGCCAAGGTGGTCGAGGGCATGTGGTGCGCCAACGGCAAGC CGCTCGAGCCACAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig18455:1088..1351+

>mRNA_P-wetherbeei_contig18455.2.1 ID=mRNA_P-wetherbeei_contig18455.2.1|Name=mRNA_P-wetherbeei_contig18455.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=264bp|location=Sequence derived from alignment at P-wetherbeei_contig18455:1088..1351+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGAACGATGGTGCCGGCGGGCTTCCCGATGTCGTTGCTCAAGAACGA
CGCCGAACGCCTCGTCGTCAACGAGTTGTGTCGGCAGCTGTCCGACGAGT
GGCTCATCCTCCCGGACGTCGGCATCACCGGACCGCGAGACCGGCAGATC
GACCTCGTGATCGCTCATCCCGACGAGGGCATCGCCATCGTCGAAGTGAA
GGGTCACCGCGCCAAGGTGGTCGAGGGCATGTGGTGCGCCAACGGCAAGC
CGCTCGAGCCACAG
back to top