mRNA_P-wetherbeei_contig1845.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1845.5.1
Unique NamemRNA_P-wetherbeei_contig1845.5.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1845.5.1 vs. uniprot
Match: UPI0019A768D1 (GAF domain-containing protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=UPI0019A768D1)

HSP 1 Score: 169 bits (428), Expect = 8.170e-51
Identity = 90/154 (58.44%), Postives = 103/154 (66.88%), Query Frame = 1
Query:   10 LKALDRAVRAVREESDPAAALRVIGEEMDRLIGSRMFTFLRFDYGAFTMERLHGTQPGTYPKGSSKPMRRGRWYETLVDRGEVFIAAGEKEMGETFGDFASLKALGVTSTMCVPVRYLGRTLGTMNLNGDEGRYGPAQAALALPFATLAVPAFL 471
            L AL+R  R +REE+D  + L  IG EMDRLIGSRMFTFLRFD   F MERL+ T P  YP G+ KPMR G W + ++D GEVFIA   + M  TF D A+L  LG T++MCVPVR    TLGTMNLNG  G Y    AALA PFATLAV   L
Sbjct:   15 LAALERVARVIREETDAVSGLAAIGIEMDRLIGSRMFTFLRFDLDRFEMERLYCTLPERYPIGARKPMRGGPWAQRVIDEGEVFIAPDAEAMRATFADHAALAELGCTASMCVPVRLRACTLGTMNLNGRAGTYDAQTAALAQPFATLAVALLL 168          
BLAST of mRNA_P-wetherbeei_contig1845.5.1 vs. uniprot
Match: UPI001BABCAE0 (GAF domain-containing protein n=1 Tax=Bradyrhizobium jicamae TaxID=280332 RepID=UPI001BABCAE0)

HSP 1 Score: 107 bits (267), Expect = 1.740e-26
Identity = 56/143 (39.16%), Postives = 78/143 (54.55%), Query Frame = 1
Query:   58 PAAALRVIGEEMDRLIGSRMFTFLRFDYGAFTMERLHGTQPGTYPKGSSKPMRRGRWYETLVDRGEVFIAAGEKEMGETFGDFASLKALGVTSTMCVPVRYLGRTLGTMNLNGDEGRYGPAQAALALPFATLAVPAFLSVART 486
            P A    + E +   IG R+FT L +D       R++   P  YP G  K +  G W ET++DRGE +I     ++   F D A + +LG  S + +PVR+ GRTLG++NL  + G YG   AAL  PFA  A+PA LS A +
Sbjct:   27 PHALFAALDEALKSAIGHRLFTILTYDSATSEAARVYSNLPAPYPTGGRKRLAPGPWTETVLDRGEAYIGRTLADLRMVFSDHALIASLGCESVLNMPVRWCGRTLGSLNLLHEAGWYGEDDAALCRPFAQFALPALLSPASS 169          
BLAST of mRNA_P-wetherbeei_contig1845.5.1 vs. uniprot
Match: A0A0R3CQJ3_9BRAD (Histidine kinase n=6 Tax=Bradyrhizobium TaxID=374 RepID=A0A0R3CQJ3_9BRAD)

HSP 1 Score: 106 bits (265), Expect = 3.120e-26
Identity = 56/152 (36.84%), Postives = 83/152 (54.61%), Query Frame = 1
Query:   28 AVRAVREESD-PAAALRVIGEEMDRLIGSRMFTFLRFDYGAFTMERLHGTQPGTYPKGSSKPMRRGRWYETLVDRGEVFIAAGEKEMGETFGDFASLKALGVTSTMCVPVRYLGRTLGTMNLNGDEGRYGPAQAALALPFATLAVPAFLSVA 480
            AV A ++ +D P A    + E +   IG ++FT L +D   F   R++   PG YP G  K +  G W E ++D GE +I   + ++   F D   + +LG  S + +PVR+ GRTLG++NL  + G Y     A  LPFA LA+PA L +A
Sbjct:   14 AVAAAQDRADQPGAVFAALDEALKSAIGHKLFTILTYDGATFEAARVYSNLPGPYPTGGRKRLAPGPWTEAVLDSGEAYIGRTQDDLRTVFPDHELIASLGCASVLNMPVRWRGRTLGSLNLLHEAGWYDEDDVAACLPFAQLALPALLLMA 165          
BLAST of mRNA_P-wetherbeei_contig1845.5.1 vs. uniprot
Match: UPI001B8A0E90 (GAF domain-containing protein n=1 Tax=Bradyrhizobium iriomotense TaxID=441950 RepID=UPI001B8A0E90)

HSP 1 Score: 106 bits (265), Expect = 3.290e-26
Identity = 59/152 (38.82%), Postives = 83/152 (54.61%), Query Frame = 1
Query:   28 AVRAVREESDPAAALRV-IGEEMDRLIGSRMFTFLRFDYGAFTMERLHGTQPGTYPKGSSKPMRRGRWYETLVDRGEVFIAAGEKEMGETFGDFASLKALGVTSTMCVPVRYLGRTLGTMNLNGDEGRYGPAQAALALPFATLAVPAFLSVA 480
            AV A +   D   AL V + E M   IG ++FT L +D     + RL+  QP  YP G  K +  G W E ++DRGE +I   + ++   F D   + +LG  S + +PVR+ GRTLG++NL  + G YG    A  LPFA L +PA L+ A
Sbjct:   14 AVAAAQGRVDQPEALFVALDEAMKSAIGHKLFTILTYDEATGEVARLYSNQPAPYPAGGRKRLAPGPWTEAVLDRGEAYIGRTQDDLRTVFSDHELIASLGCESVLNMPVRWRGRTLGSLNLLHEAGWYGEDDVAACLPFAQLTLPALLAPA 165          
BLAST of mRNA_P-wetherbeei_contig1845.5.1 vs. uniprot
Match: A0A6S6Z173_9BURK (GAF domain-containing protein n=6 Tax=Achromobacter TaxID=222 RepID=A0A6S6Z173_9BURK)

HSP 1 Score: 106 bits (265), Expect = 3.760e-26
Identity = 57/156 (36.54%), Postives = 80/156 (51.28%), Query Frame = 1
Query:   19 LDRAVRAVREESDPAAALRVIGEEMDRLIGSRMFTFLRFDYGAFTMERLHGTQPGTYPKGSSKPMRRGRWYETLVDRGEVFIAAGEKEMGETFGDFASLKALGVTSTMCVPVRYLGRTLGTMNLNGDEGRYGPAQAALALPFATLAVPAFLSVART 486
            LD    A      P A    +   +   IG R+FT L +D       RL+   P  YP G SK + +G W E ++DRGE +I     ++ + F D A + +LG  S + +P+R+ GRTLG++NL      YGPA AA   P+A LA+PA L    T
Sbjct:   16 LDAVASAHAATDQPQAVFAAVDRALAAQIGHRLFTILAYDPDTSLATRLYSNLPDAYPAGGSKTVAQGPWTEAVLDRGEAYIGQTLDDLRQVFSDHALIDSLGCQSVLNMPIRWRGRTLGSLNLLHAAHWYGPADAAACRPYAQLALPAVLPALLT 171          
BLAST of mRNA_P-wetherbeei_contig1845.5.1 vs. uniprot
Match: UPI001BAAF52A (GAF domain-containing protein n=2 Tax=Bradyrhizobium liaoningense TaxID=43992 RepID=UPI001BAAF52A)

HSP 1 Score: 106 bits (264), Expect = 4.650e-26
Identity = 52/143 (36.36%), Postives = 79/143 (55.24%), Query Frame = 1
Query:   58 PAAALRVIGEEMDRLIGSRMFTFLRFDYGAFTMERLHGTQPGTYPKGSSKPMRRGRWYETLVDRGEVFIAAGEKEMGETFGDFASLKALGVTSTMCVPVRYLGRTLGTMNLNGDEGRYGPAQAALALPFATLAVPAFLSVART 486
            P A    + + +  +IG ++FT L +D  +    R++   PG YP G  K +  G W E ++DRGE +I     ++ + F D   + +LG  S + +PVR+ GRTLG++NL  + G YG    A  LPFA LA+PA L   R+
Sbjct:   25 PDALFAALDDALQAVIGHKLFTILTYDGDSGEAARVYSNLPGPYPTGGRKRLAPGPWTEAVLDRGEAYIGRNRDDLRDVFSDHELIASLGCESVLNMPVRWRGRTLGSLNLLHEAGWYGEDDVAACLPFAQLALPALLMTDRS 167          
BLAST of mRNA_P-wetherbeei_contig1845.5.1 vs. uniprot
Match: UPI0010088B48 (GAF domain-containing protein n=1 Tax=Bradyrhizobium guangxiense TaxID=1325115 RepID=UPI0010088B48)

HSP 1 Score: 105 bits (263), Expect = 6.230e-26
Identity = 51/139 (36.69%), Postives = 79/139 (56.83%), Query Frame = 1
Query:   58 PAAALRVIGEEMDRLIGSRMFTFLRFDYGAFTMERLHGTQPGTYPKGSSKPMRRGRWYETLVDRGEVFIAAGEKEMGETFGDFASLKALGVTSTMCVPVRYLGRTLGTMNLNGDEGRYGPAQAALALPFATLAVPAFLS 474
            P A    + + +   IG ++FT L +D G+    R++  +PG YP G  K +  G W E ++DRGE ++    +++   F D   + +LG  S + +PVR+ GRTLG++NL  + G YG    A  LPFA LA+PA L+
Sbjct:   25 PEALFAALDQALKSAIGHKLFTILTYDDGSGEAARIYSNRPGPYPTGGRKRLTTGPWTEAVLDRGEAYVGYTIEDLRNVFPDHELIASLGCESVLNMPVRWRGRTLGSLNLLHEAGWYGEDDVAACLPFAQLALPALLT 163          
BLAST of mRNA_P-wetherbeei_contig1845.5.1 vs. uniprot
Match: A0A2M6UC31_9BRAD (Histidine kinase n=15 Tax=Bradyrhizobiaceae TaxID=41294 RepID=A0A2M6UC31_9BRAD)

HSP 1 Score: 105 bits (261), Expect = 1.310e-25
Identity = 53/143 (37.06%), Postives = 77/143 (53.85%), Query Frame = 1
Query:   52 SDPAAALRVIGEEMDRLIGSRMFTFLRFDYGAFTMERLHGTQPGTYPKGSSKPMRRGRWYETLVDRGEVFIAAGEKEMGETFGDFASLKALGVTSTMCVPVRYLGRTLGTMNLNGDEGRYGPAQAALALPFATLAVPAFLSVA 480
            + P A    + E +   IG ++FT L +D G+    R++   PG YP G  K +  G W E ++DRGE +I     ++   F D   + +LG  S + +PVR+ GRTLG++NL    G YG    A  LPFA L +PA L+ A
Sbjct:   23 NQPDALFAALDEAVKSAIGHKLFTILTYDSGSGEAARVYSNLPGPYPAGGRKRLAPGPWTEAVLDRGEAYIGYNRDDLRTVFSDHELIASLGCESVLNMPVRWRGRTLGSLNLLHQAGWYGEDDVAACLPFAQLTLPALLAPA 165          
BLAST of mRNA_P-wetherbeei_contig1845.5.1 vs. uniprot
Match: A0A7W6SH07_9BRAD (Uncharacterized protein n=4 Tax=Bradyrhizobium TaxID=374 RepID=A0A7W6SH07_9BRAD)

HSP 1 Score: 105 bits (261), Expect = 1.310e-25
Identity = 58/150 (38.67%), Postives = 83/150 (55.33%), Query Frame = 1
Query:   28 AVRAVREESDPAAALRV-IGEEMDRLIGSRMFTFLRFDYGAFTMERLHGTQPGTYPKGSSKPMRRGRWYETLVDRGEVFIAAGEKEMGETFGDFASLKALGVTSTMCVPVRYLGRTLGTMNLNGDEGRYGPAQAALALPFATLAVPAFLS 474
            AV A +   D   AL V + + +   IG ++FT L +D     + RL+   PG YP G  K +  G W E ++DRGE +I     ++   F D   + +LG  S + +PVR+ GRTLG++NL  + G YG   AA  LPFA LA+PA L+
Sbjct:   14 AVAAAQGRVDQPDALFVALDQGLKSAIGHKLFTVLTYDEATSELARLYSNLPGLYPTGGRKRLAPGPWTEAVLDRGEAYIGYTRDDLRTVFSDHELIASLGCESVLNMPVRWRGRTLGSLNLLHEAGWYGEDDAAACLPFAQLALPALLT 163          
BLAST of mRNA_P-wetherbeei_contig1845.5.1 vs. uniprot
Match: A0A0D7NKK1_9BRAD (Histidine kinase n=2 Tax=unclassified Bradyrhizobium TaxID=2631580 RepID=A0A0D7NKK1_9BRAD)

HSP 1 Score: 103 bits (258), Expect = 3.700e-25
Identity = 55/154 (35.71%), Postives = 85/154 (55.19%), Query Frame = 1
Query:   28 AVRAVREESD-PAAALRVIGEEMDRLIGSRMFTFLRFDYGAFTMERLHGTQPGTYPKGSSKPMRRGRWYETLVDRGEVFIAAGEKEMGETFGDFASLKALGVTSTMCVPVRYLGRTLGTMNLNGDEGRYGPAQAALALPFATLAVPAFLSVART 486
            AV A +  +D P A    + + +   IG ++FT L +D G     R++   P +YP G  K +  G W E ++DRGE +I   + ++   F D   + +LG  S + +PVR+ GRTLG++NL  +   YG    A  LPFA LA+PA L+ A++
Sbjct:   14 AVAAAQGRADQPDALFAALDDALKSAIGHKLFTVLTYDDGTGEAARVYSNLPASYPVGGRKRLATGPWTEAVLDRGEAYIGRTQDDLRNVFSDHELIASLGCASVLNMPVRWCGRTLGSLNLLHEACWYGEDDVAACLPFAQLALPALLAPAQS 167          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1845.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0019A768D18.170e-5158.44GAF domain-containing protein n=1 Tax=Proteobacter... [more]
UPI001BABCAE01.740e-2639.16GAF domain-containing protein n=1 Tax=Bradyrhizobi... [more]
A0A0R3CQJ3_9BRAD3.120e-2636.84Histidine kinase n=6 Tax=Bradyrhizobium TaxID=374 ... [more]
UPI001B8A0E903.290e-2638.82GAF domain-containing protein n=1 Tax=Bradyrhizobi... [more]
A0A6S6Z173_9BURK3.760e-2636.54GAF domain-containing protein n=6 Tax=Achromobacte... [more]
UPI001BAAF52A4.650e-2636.36GAF domain-containing protein n=2 Tax=Bradyrhizobi... [more]
UPI0010088B486.230e-2636.69GAF domain-containing protein n=1 Tax=Bradyrhizobi... [more]
A0A2M6UC31_9BRAD1.310e-2537.06Histidine kinase n=15 Tax=Bradyrhizobiaceae TaxID=... [more]
A0A7W6SH07_9BRAD1.310e-2538.67Uncharacterized protein n=4 Tax=Bradyrhizobium Tax... [more]
A0A0D7NKK1_9BRAD3.700e-2535.71Histidine kinase n=2 Tax=unclassified Bradyrhizobi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1845contigP-wetherbeei_contig1845:4012..4500 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog318996.AXAZ01000093_gene4983
PFAMsGAF,GAF_2
Model size489
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.08e-26
EggNOG OGsCOG2203@1|root,COG2203@2|Bacteria,1RJNF@1224|Proteobacteria,2UCTF@28211|Alphaproteobacteria,3JV2U@41294|Bradyrhizobiaceae
DescriptionGaf domain
Cds size489
COG categoryT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186146.2968574-CDS-P-wetherbeei_contig1845:4011..45001683186146.2968574-CDS-P-wetherbeei_contig1845:4011..4500Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1845 4012..4500 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1845.5.1prot_P-wetherbeei_contig1845.5.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1845 4012..4500 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1845.5.1

>prot_P-wetherbeei_contig1845.5.1 ID=prot_P-wetherbeei_contig1845.5.1|Name=mRNA_P-wetherbeei_contig1845.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=163bp
ADGLKALDRAVRAVREESDPAAALRVIGEEMDRLIGSRMFTFLRFDYGAF
TMERLHGTQPGTYPKGSSKPMRRGRWYETLVDRGEVFIAAGEKEMGETFG
DFASLKALGVTSTMCVPVRYLGRTLGTMNLNGDEGRYGPAQAALALPFAT
LAVPAFLSVART*
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mRNA from alignment at P-wetherbeei_contig1845:4012..4500-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1845.5.1 ID=mRNA_P-wetherbeei_contig1845.5.1|Name=mRNA_P-wetherbeei_contig1845.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=489bp|location=Sequence derived from alignment at P-wetherbeei_contig1845:4012..4500- (Phaeothamnion wetherbeei SAG_119_79)
GCCGATGGGTTGAAGGCGCTCGACCGCGCGGTGCGCGCGGTCCGCGAGGA ATCCGACCCCGCCGCCGCGCTCAGGGTCATCGGCGAGGAGATGGACCGGC TCATCGGCAGCCGCATGTTCACGTTCCTGCGCTTCGACTACGGCGCGTTC ACCATGGAGCGCCTGCACGGCACCCAGCCCGGCACCTACCCCAAGGGCTC TTCCAAACCGATGCGGCGCGGGCGCTGGTACGAGACCCTCGTCGACCGGG GCGAGGTCTTCATCGCCGCAGGCGAGAAGGAAATGGGCGAGACCTTCGGC GACTTCGCCTCCCTCAAGGCGCTGGGCGTCACCTCCACGATGTGCGTGCC GGTGCGCTACCTGGGCAGGACGCTCGGCACGATGAACCTGAACGGCGACG AAGGCCGCTACGGCCCGGCGCAGGCGGCCCTCGCGCTGCCGTTCGCGACG CTCGCCGTGCCGGCGTTCCTCAGCGTCGCGCGCACCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1845:4012..4500-

>mRNA_P-wetherbeei_contig1845.5.1 ID=mRNA_P-wetherbeei_contig1845.5.1|Name=mRNA_P-wetherbeei_contig1845.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=489bp|location=Sequence derived from alignment at P-wetherbeei_contig1845:4012..4500- (Phaeothamnion wetherbeei SAG_119_79)
GCCGATGGGTTGAAGGCGCTCGACCGCGCGGTGCGCGCGGTCCGCGAGGA
ATCCGACCCCGCCGCCGCGCTCAGGGTCATCGGCGAGGAGATGGACCGGC
TCATCGGCAGCCGCATGTTCACGTTCCTGCGCTTCGACTACGGCGCGTTC
ACCATGGAGCGCCTGCACGGCACCCAGCCCGGCACCTACCCCAAGGGCTC
TTCCAAACCGATGCGGCGCGGGCGCTGGTACGAGACCCTCGTCGACCGGG
GCGAGGTCTTCATCGCCGCAGGCGAGAAGGAAATGGGCGAGACCTTCGGC
GACTTCGCCTCCCTCAAGGCGCTGGGCGTCACCTCCACGATGTGCGTGCC
GGTGCGCTACCTGGGCAGGACGCTCGGCACGATGAACCTGAACGGCGACG
AAGGCCGCTACGGCCCGGCGCAGGCGGCCCTCGCGCTGCCGTTCGCGACG
CTCGCCGTGCCGGCGTTCCTCAGCGTCGCGCGCACCTGA
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