mRNA_P-wetherbeei_contig18433.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18433.1.1
Unique NamemRNA_P-wetherbeei_contig18433.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig18433.1.1 vs. uniprot
Match: A0A6H5KLW3_9PHAE (Hexosyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLW3_9PHAE)

HSP 1 Score: 181 bits (458), Expect = 6.930e-54
Identity = 80/149 (53.69%), Postives = 109/149 (73.15%), Query Frame = 1
Query:    1 RVYAGVPTACDLPTNPNNLIGRVIKDPTDKWYDEKFVNHTLRGLDCYPVYMQGAFYVLSYELVKFLEGGIDHYVTFTNEDVTVGSWLLGVDREVVPIHDVRRAKLWDCVCAQKRVPAAYRRDHVFFHNCKEDWQLQTCHNQLHMPGLLC 447
            +VYAGVPTAC+  TNP+   GRV+K+P  +W+D K+V HTL GLDC+P YMQGAFY+L+  LV+ L  G +H   FTNEDVT+GSWL+GVDRE+V ++++  + LWDC+CA+ ++    RR  +FFHNCK   QL+ C  +L  PG+ C
Sbjct:  153 KVYAGVPTACNQSTNPDYWNGRVMKNPDHRWFDSKYVQHTLGGLDCFPAYMQGAFYILAQPLVEHLYRGHEHLECFTNEDVTIGSWLMGVDREMVEMYNLHTSHLWDCLCARTQITVKTRRKQMFFHNCKGLSQLKLCGTRLLRPGVGC 301          
BLAST of mRNA_P-wetherbeei_contig18433.1.1 vs. uniprot
Match: D8LT07_ECTSI (Beta-1,3-n-acetylglucosaminyltransferase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT07_ECTSI)

HSP 1 Score: 183 bits (464), Expect = 8.650e-52
Identity = 80/149 (53.69%), Postives = 110/149 (73.83%), Query Frame = 1
Query:    1 RVYAGVPTACDLPTNPNNLIGRVIKDPTDKWYDEKFVNHTLRGLDCYPVYMQGAFYVLSYELVKFLEGGIDHYVTFTNEDVTVGSWLLGVDREVVPIHDVRRAKLWDCVCAQKRVPAAYRRDHVFFHNCKEDWQLQTCHNQLHMPGLLC 447
            +VY GVPTAC+  TNP+   GRV+K+P  +W+D K+V HTL GLDC+P YMQGAFY+L+  LV+ L  G +H   FTNEDVT+GSWL+GVDRE+V ++++R + LWDC+CA+ ++    R+ H+FFHNCK   QL+ C  +L  PG+ C
Sbjct:  489 KVYVGVPTACNQSTNPDYWNGRVMKNPDHRWFDSKYVQHTLGGLDCFPAYMQGAFYILAQPLVEHLYRGHEHLECFTNEDVTIGSWLMGVDREMVEMYNLRTSHLWDCLCARTQITVKTRKKHMFFHNCKGLSQLKLCGTRLLRPGVGC 637          
BLAST of mRNA_P-wetherbeei_contig18433.1.1 vs. uniprot
Match: A0A835YNB7_9STRA (Hexosyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNB7_9STRA)

HSP 1 Score: 169 bits (427), Expect = 3.470e-50
Identity = 80/138 (57.97%), Postives = 100/138 (72.46%), Query Frame = 1
Query:    1 RVYAGVPTACDLPTNPNNLIGRVIKDPTDKWYDEKFVNHTLRGLDCYPVYMQGAFYVLSYELVKFLEGGIDHYVTFTNEDVTVGSWLLGVDREVVPIHDVRRAKLWDCVCAQKRVPAAYRRDHVFFHNCKEDWQLQTC 414
            +VYAG+PTAC L +NP+  IGRVIKDP  KW+D KFV+HTL GLDCYP Y QGAFY+LS  LV++L  G    +TFTNEDVT+GSWL+GVDRE++  + +  A+LW+C CA+      Y  +  FFHNCK   QLQ C
Sbjct:   81 KVYAGIPTACGLESNPH--IGRVIKDPNHKWHDAKFVSHTLGGLDCYPAYHQGAFYLLSEPLVQYLHQGRSKLLTFTNEDVTMGSWLMGVDREMIAFNSISEARLWECTCAKYTKWLKYDTN-AFFHNCKSLDQLQKC 215          
BLAST of mRNA_P-wetherbeei_contig18433.1.1 vs. uniprot
Match: A0A6H5JHW0_9PHAE (Hexosyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHW0_9PHAE)

HSP 1 Score: 174 bits (440), Expect = 5.690e-50
Identity = 77/138 (55.80%), Postives = 99/138 (71.74%), Query Frame = 1
Query:    1 RVYAGVPTACDLPTNPNNLIGRVIKDPTDKWYDEKFVNHTLRGLDCYPVYMQGAFYVLSYELVKFLEGGIDHYVTFTNEDVTVGSWLLGVDREVVPIHDVRRAKLWDCVCAQKRVPAAYRRDHVFFHNCKEDWQLQTC 414
            +VY G+PTAC LP NPN+ +G+VI D  DKWYD K++NHT+ GLDCYPVYMQGAFY+LSY LV+FL  G    +TF NEDVT+G WL GVDR + P++D+R A++W+C C +         + VFFHNCK    L+ C
Sbjct:  271 KVYGGIPTACHLPNNPNDAVGKVIVDMDDKWYDGKYLNHTMNGLDCYPVYMQGAFYILSYPLVEFLNQGSSKLLTFDNEDVTIGLWLHGVDRAIFPLNDLRDARVWECSCKRPNFNPGGDAN-VFFHNCKSMDDLRGC 407          
BLAST of mRNA_P-wetherbeei_contig18433.1.1 vs. uniprot
Match: A0A835YTA1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTA1_9STRA)

HSP 1 Score: 172 bits (437), Expect = 2.980e-48
Identity = 82/138 (59.42%), Postives = 101/138 (73.19%), Query Frame = 1
Query:    1 RVYAGVPTACDLPTNPNNLIGRVIKDPTDKWYDEKFVNHTLRGLDCYPVYMQGAFYVLSYELVKFLEGGIDHYVTFTNEDVTVGSWLLGVDREVVPIHDVRRAKLWDCVCAQKRVPAAYRRDHVFFHNCKEDWQLQTC 414
            R+YAGVPTAC +  N  N +GRVI D T++WYD KFV HT+ GL CYPVYMQGAFYVL+  LV+FL  G  H+VTF NEDVTVGSWLLGVDR++V I D+  A+LW C C+   +P   R+  VFFH+CK   +L+ C
Sbjct:  429 RLYAGVPTACGVHRNNPN-VGRVIMDKTNRWYDPKFVTHTMGGLPCYPVYMQGAFYVLAQPLVEFLNLGRPHWVTFQNEDVTVGSWLLGVDRDIVTIDDITTARLWGCQCSLDTMPQWARKSSVFFHDCKALEKLRRC 565          
BLAST of mRNA_P-wetherbeei_contig18433.1.1 vs. uniprot
Match: A0A835YWI3_9STRA (Hexosyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWI3_9STRA)

HSP 1 Score: 167 bits (424), Expect = 7.320e-48
Identity = 76/143 (53.15%), Postives = 102/143 (71.33%), Query Frame = 1
Query:    1 RVYAGVPTACDLPTNPNNLIGRVIKDPTDKWYDEKFVNHTLRGLDCYPVYMQGAFYVLSYELVKFLEGGIDHYVTFTNEDVTVGSWLLGVDREVVPIHDVRRAKLWDCVCAQKRVP--AAYRRDH---VFFHNCKEDWQLQTC 414
            +VYAGVPT C++P +   ++GRV  DPT KWYDE++V HT+  ++CYP Y QGA Y+LS  LV+FL  G DH +TF NEDVT+G+WL+GVDR VV + D+  A+LW+C CA  R    AA+ ++H    FFHNCK+ WQ+  C
Sbjct:  239 KVYAGVPTHCNMPGH--QMVGRVFSDPTHKWYDERYVEHTMGSMECYPPYHQGAGYILSRSLVEFLYKGRDHLLTFINEDVTMGTWLMGVDRSVVSLRDLDGARLWECTCASYRFAHDAAFHKNHQNNAFFHNCKQAWQMLKC 379          
BLAST of mRNA_P-wetherbeei_contig18433.1.1 vs. uniprot
Match: D7G6P0_ECTSI (Hexosyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6P0_ECTSI)

HSP 1 Score: 168 bits (425), Expect = 2.670e-47
Identity = 76/115 (66.09%), Postives = 90/115 (78.26%), Query Frame = 1
Query:    1 RVYAGVPTACDLPTNPNNLIGRVIKDPTDKWYDEKFVNHTLRGLDCYPVYMQGAFYVLSYELVKFLEGGIDHYVTFTNEDVTVGSWLLGVDREVVPIHDVRRAKLWDCVCAQKRV 345
            ++YAGVPTAC+ P NP+  +GRVIKD  DKWYD+KFV+HTL GLDCYPVYMQGAFYVL+  LV+ L  G +HY TF NEDVTVGSWLLGVDR +  IHD   ++LW+CVC    V
Sbjct:  312 KIYAGVPTACNSPANPSVKVGRVIKDHKDKWYDQKFVHHTLAGLDCYPVYMQGAFYVLAQPLVEHLYRGREHYDTFINEDVTVGSWLLGVDRALGTIHDFESSRLWNCVCGSNFV 426          
BLAST of mRNA_P-wetherbeei_contig18433.1.1 vs. uniprot
Match: D7FQB9_ECTSI (Hexosyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQB9_ECTSI)

HSP 1 Score: 167 bits (422), Expect = 6.000e-47
Identity = 74/138 (53.62%), Postives = 98/138 (71.01%), Query Frame = 1
Query:    1 RVYAGVPTACDLPTNPNNLIGRVIKDPTDKWYDEKFVNHTLRGLDCYPVYMQGAFYVLSYELVKFLEGGIDHYVTFTNEDVTVGSWLLGVDREVVPIHDVRRAKLWDCVCAQKRVPAAYRRDHVFFHNCKEDWQLQTC 414
            +VY G+PTAC LP NP++ +G+VI D  +KWYD K++NHT+ GLDCYPVYMQGAFY+LSY LV+FL  G    +TF NEDVT+G WL GVDR + P++D+R A++W+C C +         + VFFH CK    L+ C
Sbjct:  311 KVYGGIPTACHLPNNPDDEVGKVIVDMDEKWYDGKYLNHTMNGLDCYPVYMQGAFYILSYPLVEFLNQGSSKLLTFDNEDVTIGLWLHGVDRAIFPLNDLRDARMWECSCKRPNFNPGGDAN-VFFHGCKGMDDLRGC 447          
BLAST of mRNA_P-wetherbeei_contig18433.1.1 vs. uniprot
Match: A0A835Z4X8_9STRA (Hexosyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4X8_9STRA)

HSP 1 Score: 126 bits (317), Expect = 2.350e-32
Identity = 76/192 (39.58%), Postives = 93/192 (48.44%), Query Frame = 1
Query:    1 RVYAGVPTACDLPTNPNNLIGRVIKDPTDKWYDEKFVNHTLRGLDCYPVYM----------------------------------------------------QGAFYVLSYELVKFLEGGIDHYVTFTNEDVTVGSWLLGVDREVVPIHDVRRAKLWDCVCAQKRVPAAYRR--DHVFFHNCKEDWQLQTC 414
            RVYAGVPTAC L  + ++  GR+I+DPT KW+D KFV HTL GLDCYP Y                                                     QGAFY+LS  LV  L  G    V F NEDVTVG+W++ ++RE+V +  +  A LWDC CA    P  + R   +VF HNCK   QLQ C
Sbjct:  155 RVYAGVPTACGLEAHSDS--GRIIRDPTHKWHDAKFVAHTLGGLDCYPAYXXXXXXXXXXXXXXXXXXXXXRQRGLRGGACGQSLLELKLAVHNSLDKYPAYHQGAFYLLSQPLVAHLHRGRAQLVAFANEDVTVGAWMMALNREMVALGSLSAAHLWDCTCA---TPTKWLRYDPNVFHHNCKALAQLQAC 341          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18433.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5KLW3_9PHAE6.930e-5453.69Hexosyltransferase n=1 Tax=Ectocarpus sp. CCAP 131... [more]
D8LT07_ECTSI8.650e-5253.69Beta-1,3-n-acetylglucosaminyltransferase, putative... [more]
A0A835YNB7_9STRA3.470e-5057.97Hexosyltransferase n=1 Tax=Tribonema minus TaxID=3... [more]
A0A6H5JHW0_9PHAE5.690e-5055.80Hexosyltransferase n=1 Tax=Ectocarpus sp. CCAP 131... [more]
A0A835YTA1_9STRA2.980e-4859.42Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YWI3_9STRA7.320e-4853.15Hexosyltransferase n=1 Tax=Tribonema minus TaxID=3... [more]
D7G6P0_ECTSI2.670e-4766.09Hexosyltransferase n=2 Tax=Ectocarpus TaxID=2879 R... [more]
D7FQB9_ECTSI6.000e-4753.62Hexosyltransferase n=1 Tax=Ectocarpus siliculosus ... [more]
A0A835Z4X8_9STRA2.350e-3239.58Hexosyltransferase n=1 Tax=Tribonema minus TaxID=3... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18433contigP-wetherbeei_contig18433:288..1351 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LT07
PFAMsEOS1,Galactosyl_T
Model size450
Max annot lvl2759|Eukaryota
KEGG koko:K00734
KEGG ReactionR05927
KEGG Pathwayko00532,ko00534,ko01100,map00532,map00534,map01100
KEGG ModuleM00057
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.42e-52
EggNOG OGsKOG2288@1|root,KOG2288@2759|Eukaryota
EC2.4.1.134
Descriptiongalactosyltransferase activity
Cds size450
COG categoryM
CAZyGT31
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186145.9014251-CDS-P-wetherbeei_contig18433:287..4701683186145.9014251-CDS-P-wetherbeei_contig18433:287..470Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18433 288..470 -
1683186145.9120111-CDS-P-wetherbeei_contig18433:709..8201683186145.9120111-CDS-P-wetherbeei_contig18433:709..820Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18433 710..820 -
1683186145.9204087-CDS-P-wetherbeei_contig18433:1195..13511683186145.9204087-CDS-P-wetherbeei_contig18433:1195..1351Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18433 1196..1351 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18433.1.1prot_P-wetherbeei_contig18433.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18433 288..1351 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18433.1.1

>prot_P-wetherbeei_contig18433.1.1 ID=prot_P-wetherbeei_contig18433.1.1|Name=mRNA_P-wetherbeei_contig18433.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=150bp
RVYAGVPTACDLPTNPNNLIGRVIKDPTDKWYDEKFVNHTLRGLDCYPVY
MQGAFYVLSYELVKFLEGGIDHYVTFTNEDVTVGSWLLGVDREVVPIHDV
RRAKLWDCVCAQKRVPAAYRRDHVFFHNCKEDWQLQTCHNQLHMPGLLC*
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mRNA from alignment at P-wetherbeei_contig18433:288..1351-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18433.1.1 ID=mRNA_P-wetherbeei_contig18433.1.1|Name=mRNA_P-wetherbeei_contig18433.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1064bp|location=Sequence derived from alignment at P-wetherbeei_contig18433:288..1351- (Phaeothamnion wetherbeei SAG_119_79)
AGGGTGTATGCGGGGGTGCCGACAGCATGCGACCTGCCGACGAACCCCAA CAACCTTATCGGGCGCGTCATCAAGGATCCGACGGACAAGTGGTACGACG AAAAGTTCGTCAACCACACCCTCCGTGGCCTGGACTGCTACCCAGTCTAC ATGCAGGTACAGCAGTACCGGTCGTGCTCGTTTTCGTGGCAGATTCTGCG GTAGTGTGGGTGCTGCGGGAAGTGCCGACAAGGGGGGCAAAATGGCGGGG GGGGGCTTTTAGTGTCACTGGGGGCTTCAAGTCAGTTTCGAGAGGTTAGT CTTCGTTGACACTTATGGAGGCGGTTTAGGCCGCCGTGAGATACCTCATC TGCTCCTGCTGCTGGCGTCACACCATCACGGGCGCGGCCGCCGCCCGCCC TGCAATGACTGGGTTTGCGTTGCGGGCCACCTCACTCACTCGCTGCTTCC GTTGTCGTTCTCCCTGTTTTTGTTCATCTTTTCTATTCCTGTTCCTCTTC TCCATCTGATCTGCATGGTCGGCTTGTGCAGGGCGCCTTCTACGTGCTGT CGTACGAGCTGGTCAAGTTTTTGGAGGGCGGCATAGACCACTACGTCACA TTCACCAACGAGGACGTCACCGTCGGCTCCTGGCTCCTCGGGGTACGGCG ATTGCTCGGTCGGCCTGCACTGGTATTATGCAGCTTTTCGGTTTCTTGCA GATGCGAAGTGGCCACCTTGAACATTTCAAAGAGGAGGTTAAGTTGTGAA TGTGCGCTGTGGTGACTTGTTTGCGCCCGGTCCTACGACGGCCTCGATCC GACACCTTCACCACCGGCCCGTCTTTTCAGCCCCTTCTTTTCCTCTTGAA ACGTATGCGATGACCGTATGCTGCACGGCAGGTGGACAGGGAAGTGGTGC CGATCCACGACGTCCGGCGGGCGAAGCTGTGGGATTGTGTTTGCGCGCAG AAGCGTGTCCCGGCGGCCTACCGTCGCGACCACGTCTTCTTTCACAACTG CAAGGAAGACTGGCAGCTGCAGACGTGCCACAACCAGCTGCACATGCCCG GCCTGCTTTGCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18433:288..1351-

>mRNA_P-wetherbeei_contig18433.1.1 ID=mRNA_P-wetherbeei_contig18433.1.1|Name=mRNA_P-wetherbeei_contig18433.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=450bp|location=Sequence derived from alignment at P-wetherbeei_contig18433:288..1351- (Phaeothamnion wetherbeei SAG_119_79)
AGGGTGTATGCGGGGGTGCCGACAGCATGCGACCTGCCGACGAACCCCAA
CAACCTTATCGGGCGCGTCATCAAGGATCCGACGGACAAGTGGTACGACG
AAAAGTTCGTCAACCACACCCTCCGTGGCCTGGACTGCTACCCAGTCTAC
ATGCAGGGCGCCTTCTACGTGCTGTCGTACGAGCTGGTCAAGTTTTTGGA
GGGCGGCATAGACCACTACGTCACATTCACCAACGAGGACGTCACCGTCG
GCTCCTGGCTCCTCGGGGTGGACAGGGAAGTGGTGCCGATCCACGACGTC
CGGCGGGCGAAGCTGTGGGATTGTGTTTGCGCGCAGAAGCGTGTCCCGGC
GGCCTACCGTCGCGACCACGTCTTCTTTCACAACTGCAAGGAAGACTGGC
AGCTGCAGACGTGCCACAACCAGCTGCACATGCCCGGCCTGCTTTGCTGA
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