mRNA_P-wetherbeei_contig1843.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1843.2.1
Unique NamemRNA_P-wetherbeei_contig1843.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1843.2.1 vs. uniprot
Match: A0A6P4ZZA4_BRABE (sodium/potassium/calcium exchanger 4-like n=2 Tax=Branchiostoma TaxID=7737 RepID=A0A6P4ZZA4_BRABE)

HSP 1 Score: 199 bits (507), Expect = 1.860e-50
Identity = 203/713 (28.47%), Postives = 307/713 (43.06%), Query Frame = 1
Query:  304 VIYLLGILYTFQGIAMVCEDYFVASLNRLVEELNVSPDVAGATFMAAGTSAPELFAALVGLFVSESSDTGVGTVVGSAVFNILIIIGGSLMVIPGGVIL-IELAPLARDTFFYLASLVALYYAFKDGEVTVAASGAMVAVYGLYVFVNAFWGQILAASRRLALSGGGGALLVNETTALVAGAGAAAGPYGEAPTGEAARAAFATRLSLMSHTRQSVVSHFYGLREGEEALEFEVAAPLLRTYSSLHPKERSHVEEIFEQAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVISVPLRLLTVTLRREAVLSSATGPGTVWDDLFQALALCGDDASLTLGDFMPMYMTWNQCGKVWKLRPLYTDDDVACMRAAFAEHQDPAAAADAGLAAAGALSYDSVR--RCADELLGLSGEQKWSLFELFDLSRTGDVSLPCFLMTFALWLGYRRALDAHAEGAAGQPAPWDSAAAVGDGAAEGXXXXXXXVTATAGDGGGKRASIMNYSV-VHDFMPGDEVDLPHSPFVVPKAPGEMFMFAVGFPFAVAYYLTILDCRRKAFHRFYPVTLLLSICWLGLLVTFMISWAEKMGCLWGIHPSLLGMTLCAAGTSMPDCLASMIVARQGEGMMAVSNALGSNIFDILFGLGFPFLLKTAVVSSGRPVAVSAEGIVGSVLLLLVLQAVFTVAVVWQRCRISRPLGWAFVAAYVGFLVYCYC 2430
            +++ L ++Y F  +A+VC+DYFV SL ++ E L +S DVAGATFMAAG+SAPELF +++G+F+++  D G+GT+VGSAVFNIL +IG  L  +  G+I+ +   PL RDT  YL S++ L +  +DG VT   S  M+  Y  Y+F   F  Q++A  +R  +   G A+   E T                                  + R S+             L  E +A   +T S  H  +   V+EI +Q+                                         ++T   + E  L +A                              + +   +  ++ KLR      +  C R    + Q         L   G   +DS +     D L+        S  +    S  GDV       T+ L                      D    + +G A            TA D      S+ +  +   +  PG   D       VP      F + V  P AV  ++T  D R++ + R++ VT L+SI W+ +    M+  A  +    GI  ++ G+TL AAGTS+PD +AS+IVARQG G MAVSN++GSN+FDIL GLG P+ LKT +VS G  VA+++ G++ SV LL     +  + +   + R++RPLG A +  Y  FLV+  C
Sbjct:   95 IVHTLVVIYMFAALAIVCDDYFVPSLEKISENLGLSDDVAGATFMAAGSSAPELFTSIIGVFIAKG-DVGLGTIVGSAVFNILFVIG--LCGLFAGIIVPLTWWPLFRDTAAYLVSIITLIFVIQDGNVTWYESLVMLIEYTAYIFFMGFNPQVVAWLQRRKMRKQGNAVQHTEDT----------------------------------NKRNSI-------------LMSERSASDSKTPSPTH--KPLMVDEIIQQSPRKLNFHDAGFRV----------------------------MMTHHFKPETRLRAAA---------------------------RVLVLEMQEQARIQKLR------EQKCQRQLQQQQQT--------LQYQGQNPHDSQQTLEVLDGLISGGTSSAVSRSQSTKSSIGGDVPEVVVTTTYGL----------------------DPPGGMPNGLAP-------QTPITAQDSDSATQSLADGDLHSEELEPGGICD-------VPDDLSGKFRWVVMLPCAVVLFVTCPDVRKRRWERWFIVTFLMSIFWIFIFSYIMVFMATIIAYTLGIPDTITGITLLAAGTSVPDAMASLIVARQGLGDMAVSNSIGSNVFDILLGLGLPWFLKTTIVSWGGSVAINSRGMIYSVGLLFGTVVLMILGIHCNKWRLTRPLGMAAMITYAVFLVFAVC 650          
BLAST of mRNA_P-wetherbeei_contig1843.2.1 vs. uniprot
Match: A0A267FD71_9PLAT (Uncharacterized protein n=3 Tax=Macrostomum lignano TaxID=282301 RepID=A0A267FD71_9PLAT)

HSP 1 Score: 188 bits (478), Expect = 1.340e-46
Identity = 214/712 (30.06%), Postives = 311/712 (43.68%), Query Frame = 1
Query:  304 VIYLLGILYTFQGIAMVCEDYFVASLNRLVEELNVSPDVAGATFMAAGTSAPELFAALVGLFVSESSDTGVGTVVGSAVFNILIIIGGSLMVIPGGVILIELAPLARDTFFYLASLVALYYAFKDGEVTVAASGAMVAVYGLYVFVNAFWGQILAASRRLALSGGGGALLVNETTALVAGAGAAAGPYGEAPTGEAARAAFATRLSLMSHTRQSVVSHFYGLREGEEALEFEVAAPLLRTYS-SLHPKERSHVEEIFEQAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVISVPLRLLTVTL--RREA----VLSSATGPGTVWDDLFQALALCGDDASLTLGDFMPMYMTWNQCGKVWKLRPLYTDDDVACMRAAFAEHQDPAAAADAGLAAAGALSYDSVRRCADELLGLSGEQKWSLFELFDLSRTGDVSLPCFLMTFALWLGYRRALDAHAEGAAGQPAPWDSAAAVGDGAAEGXXXXXXXVTATAGDGGGKRASIMNYSVVHDFMPGDE-VDLPHSPFVVPKAPGEMFMFAVGFPFAVAYYLTILDCRRKAFHRFYPVTLLLSICWLGLLVTFMISWAEKMGCLWGIHPSLLGMTLCAAGTSMPDCLASMIVARQGEGMMAVSNALGSNIFDILFGLGFPFLLKTAVVSSGRPVAVSAEGIVGSVLLLLVLQAVFTVAVVWQRCRISRPLGWAFVAAYVGFL 2415
            V++ +G+LY F  +A+VC+++FV SL+ +   L +S DVAGATFMAAG SAPEL  + +G FVS +SD G+GT+VGSAVFNIL ++         GV+ +   PL RD  FY+ SL  L  AF+D  +    S A++A Y  YV    F  QI    R L    G G    +E  A              APT   A AA     S+ S  R        G   G E      AA +  + + SL+    S   EI   AA                                +V+S P+R     +  RR++    +L SA G G     +FQ +    +   L             +C              V+  R+    H    A           +S    R  A EL  ++   +            G           A   G   A++    G  GQP   + AA                 T  A     KRA+        D +   E +DL       P    E  M+ + FP A+  +LT+ D R++   +F+  T + SI W+G     M+ WA+ +G + G+  S++G+T  AAGTS+PD + S++VARQG G MAVS+++GSNIFD+  GL  P+L+ + +V S  PV+V++ G V SVL+L  + A   +++   R R+S+ LG A +  Y  FL
Sbjct:   62 VLHCIGLLYMFCALAIVCDEFFVPSLSVITRRLRISNDVAGATFMAAGGSAPELATSFLGSFVS-ASDVGIGTIVGSAVFNILFVLSMCAF-FSRGVLQLTWWPLFRDCCFYMLSLTLLMIAFRDASIDWYESVALLACYAAYVLFMKFNEQIETRVRALI---GAGRRHQSEVAA--------------APTAVPAVAATVATASVPSARR--------GAEIGTENGNGNAAARVTSSQAPSLNGSSSSLPAEIGSTAAVGAA----------------------------DVLSEPVRRQQPKMLKRRQSTGLPILHSA-GVGRFRTGVFQLMTHAANQLMLQ-----------EECDGAVADAENGGTAAVSPARSGVRMHHVTQAV----------ISRTRQRPTATELSTVTSSPE----------ADGGARTEAAASVAAGASGNGSAVN----GLNGQPRRLEEAA------------KPTPTTEGAAADAKKRAA-------EDELENSEPMDLTW-----PGRARERIMYVLVFPIAILLWLTLADVRKQKSEKFFVWTFIGSIVWIGGFSYLMVWWAKLIGEIVGVPDSIMGLTFLAAGTSVPDLITSVVVARQGLGDMAVSSSVGSNIFDVTIGLPLPWLIWS-LVHSANPVSVNSRGAVCSVLMLFGMLACLVLSIAAFRWRMSKGLGVAMLCLYAVFL 657          
BLAST of mRNA_P-wetherbeei_contig1843.2.1 vs. uniprot
Match: UPI001C042592 (sodium/potassium/calcium exchanger 3-like isoform X1 n=4 Tax=Melanotaenia boesemani TaxID=1250792 RepID=UPI001C042592)

HSP 1 Score: 187 bits (475), Expect = 1.460e-46
Identity = 195/724 (26.93%), Postives = 301/724 (41.57%), Query Frame = 1
Query:  277 LDLQATWAGVIYLLGILYTFQGIAMVCEDYFVASLNRLVEELNVSPDVAGATFMAAGTSAPELFAALVGLFVSESSDTGVGTVVGSAVFNILIIIGGSLMVIPGGVILIELAPLARDTFFYLASLVALYYAFKDGEVTVAASGAMVAVYGLYVFVNAFWGQILAASRRLALSGGGGALLVNETTALVAGAGAAAGPYGEAPTGEAARAAFATRLSLMSHTRQSVVSHFYGLREGEEALEFEVAAPLLRTYSSLHPKERSHVEEIFEQAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVISVPLRLLTVTLRREAVLSSATGPGTVWDDLFQALALCGDDASLTLGDFMPMYMTWNQCGKVWKLRPLYTDDDVACMRAAFAEHQDPAAAADAGLAAAGALSYDSVRRCADELLGLSGEQKWSLFELFDLSRTGDVSLPCFLMTFALWLGYRRALDAHAEGAAGQPAPWDSAAAVGDGAAEGXXXXXXXVTATAGD-GGGKRASIMNYSVVHDFMPGDEVDLPHSPFVVPKAPGEMFMFAVGFPFAVAYYLTILDCRRKAFHRFYPVTLLLSICWLGLLVTFMISWAEKMGCLWGIHPSLLGMTLCAAGTSMPDCLASMIVARQGEGMMAVSNALGSNIFDILFGLGFPFLLKTAVVSSGRPVAVSAEGIVGSVLLLLVLQAVFTVAVVWQRCRISRPLGWAFVAAYVGFLVYCYCSLQLE 2445
            +D +   A ++++L  +Y F  +A+VC+ YFV SL ++ E L +S DVAGATFMAAG+SAPELF +L+G+F+++  D GVGT+VGSAVFNIL+IIG    +  G  I +   PL RD+ FY+ S++ L     D +V    +  ++++YG+Y+ +  F   +     R     G   L     T  V  AG           G  AR                VV+       G+++     A  ++    +LHP + +     F +A+                                      LRLL                                     +    P Y      G++        ++    +RA     ++ AA  + GL A+G L  ++      +   L GE+                                                                     V  T+G+ GGG +               DE + P  PFV+P +      + + +P +   + TI DC +  + R+Y +T L S  W+ L    M+     +    GI   ++G+T  AAGTS+PDC+AS+IVARQG G MAVSN++GSNIFD+L GLGFP+ L+T +VS G  V ++++G+V SV+LLL    +  + V   R ++ R LG   +  Y  FL+   CS+  E
Sbjct:   78 VDQRRQGAVLLHVLCAIYMFHALAIVCDVYFVPSLEKVSENLQLSQDVAGATFMAAGSSAPELFTSLIGVFITKG-DVGVGTIVGSAVFNILVIIG-LCGIFSGQPISLSWWPLFRDSVFYILSILVLILVIYDEKVLWWETIILISMYGIYIIIMKFNRSLCCLVERHCRVDGQPCLSSLRRTTAVGNAGDCDNDMVPLKPGAGAR------------VYSCVVA-------GQDS-----AVVMVDELLNLHPHQLT-----FSEAS--------------------------------------LRLL-------------------------------------ITPHFPPYTRLRMAGRI------VINERQRLIRAQV-NPEEGAALEEEGLGASGTLGRENGTAAEGDRQLLEGER---------------------------------------------------------------------VKETSGEVGGGAQLKEXXXXXXXXVEEKDE-NAPFKPFVLPDSWCVRLKWLLSWPVSFLLHCTIPDCNQPRWERWYLLTFLSSTLWIALFSYLMVWMVTIISYTLGIPDVIMGITFLAAGTSVPDCMASLIVARQGMGDMAVSNSIGSNIFDVLLGLGFPWALRTLIVSYGSVVTINSKGLVYSVILLLASVTLTVLCVHLNRWKLDRRLGLCLLLLYSIFLL---CSVSFE 615          
BLAST of mRNA_P-wetherbeei_contig1843.2.1 vs. uniprot
Match: UPI00159C26C5 (sodium/potassium/calcium exchanger 3 isoform X1 n=6 Tax=Hippoglossus TaxID=8266 RepID=UPI00159C26C5)

HSP 1 Score: 186 bits (473), Expect = 2.760e-46
Identity = 190/725 (26.21%), Postives = 290/725 (40.00%), Query Frame = 1
Query:  277 LDLQATWAGVIYLLGILYTFQGIAMVCEDYFVASLNRLVEELNVSPDVAGATFMAAGTSAPELFAALVGLFVSESSDTGVGTVVGSAVFNILIIIG--GSLMVIPGGVILIELAPLARDTFFYLASLVALYYAFKDGEVTVAASGAMVAVYGLYVFVNAFWGQILAASRRLALSGGGGALLVNETTALVAGAGAAAGPYGEAPTGEAARAAFATRLSLMSHTRQSVVSHFYGLREGEEALEFEVAAPLLRTYSSLHPKERSHVEEIFEQAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVISVPLRLLTVTLRREAVLSSATGPGTVWDDLFQALALCGDDASLTLGDFMPMYMTWNQCGKVWKLRPLYTDDDVACMRAAFAEHQDPAAAADAGLAAAGALSYDSVRRCADELLGLSGEQKWSLFELFDLSRTGDVSLPCFLMTFALWLGYRRALDAHAEGAAGQPAPWDSAAAVGDGAAEGXXXXXXXVTATAGDGGGKRASIMNYSVVHDFMPGDEVDLPHSPFVVPKAPGEMFMFAVGFPFAVAYYLTILDCRRKAFHRFYPVTLLLSICWLGLLVTFMISWAEKMGCLWGIHPSLLGMTLCAAGTSMPDCLASMIVARQGEGMMAVSNALGSNIFDILFGLGFPFLLKTAVVSSGRPVAVSAEGIVGSVLLLLVLQAVFTVAVVWQRCRISRPLGWAFVAAYVGFLVYCYCSLQLE 2445
            L+ +   A ++++L  +Y F  +A+VC+ YFV SL ++ E L +S DVAGATFMAAG+SAPELF +L+G+F+++  D GVGT+VGSAVFNIL+IIG  G     P   I +   PL RD FFY+ S++ L     D +V    +  ++++YGLY+ +  F   + +   +     G   L +   T  V  AG           G  AR        +++     V      +      L F  A+  LR   +LH                                                +I + +    V   R+ ++ +  GP                                                            ++ AA+ + GL A+G    ++     ++   L GE           + TG                                                           AG   G                    + P  PF+VP        + + +P +V  Y TI DC    + R+Y +T L S  W+ L    M+     +   +GI   ++G+T  AAGTS+PDC+AS+IVARQG G MAVSN++GSNIFD+L GLGFP+ L+T +VS G  V ++++G+V SV+LLL    +  + V     R+ R LG++ +  Y  FL+   CS+  E
Sbjct:   78 LEQRKQGAVLLHVLCAIYMFYALAIVCDVYFVPSLEKVSENLQLSQDVAGATFMAAGSSAPELFTSLIGVFITKG-DVGVGTIVGSAVFNILVIIGLCGIFAKQP---ICLSWWPLFRDAFFYILSILVLILVIYDEKVVWWETIILMSMYGLYIIIIKFNRSLCSLVEKHCSREGQPCLSILRRTTAVGNAGDCDNDMVPLKPGAGAR----VYSCVVAGQDTGVAMVDEQMNPNPHQLSFSEAS--LRLLMTLH---------------------------------------------FPPLIRLRMAGYMVISERQRLIRARVGP------------------------------------------------------------EEGAASGEEGLGASGPRGRENGSVAEEDRQTLEGE-----------TETGKE--------------------------------------------------------VAGGTSGGAXXXXXXXXXXXXXXXXXXNTPFKPFIVPDGWCMRVKWLLSWPVSVLLYFTIPDCNLPQWERWYLLTFLSSTLWIALFSYLMVWMVTIISHTFGIPEVIMGITFLAAGTSVPDCMASLIVARQGMGDMAVSNSIGSNIFDVLLGLGFPWALRTLIVSYGSVVTINSKGLVYSVVLLLASVTLTVLCVHLNHWRLDRRLGFSLLVLYAIFLL---CSVGFE 617          
BLAST of mRNA_P-wetherbeei_contig1843.2.1 vs. uniprot
Match: A0A4U5UG04_COLLU (Sodium/potassium/calcium exchanger 3 n=26 Tax=Percomorphaceae TaxID=1489872 RepID=A0A4U5UG04_COLLU)

HSP 1 Score: 185 bits (469), Expect = 8.680e-46
Identity = 194/725 (26.76%), Postives = 296/725 (40.83%), Query Frame = 1
Query:  277 LDLQATWAGVIYLLGILYTFQGIAMVCEDYFVASLNRLVEELNVSPDVAGATFMAAGTSAPELFAALVGLFVSESSDTGVGTVVGSAVFNILIIIGGSLMVIPGGVILIELAPLARDTFFYLASLVALYYAFKDGEVTVAASGAMVAVYGLYVFVNAFWGQILAASRRLALSGGGGALL-VNETTALVAGAGAAAGPYGEAPTGEAARAAFATRLSLMSHTRQSVVSHFYGLREGEEALEFEVAAPLLRTYSSLHPKERSHVEEIFEQAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVISVPLRLLTVTLRREAVLSSATGPGTVWDDLFQALALCGDDASLTLGDFMPMYMTWNQCGKVWKLRPLYTDDDVACMRAAFAEHQDPAAAADAGLAAAGALSYDSVRRCADELLGLSGEQKWSLFELFDLSRTGDVSLPCFLMTFALWLGYRRALDAHAEGAAGQPAPWDSAAAVGDGAAEGXXXXXXXVTATAGDGGGKRASIMNYSVVHDFMPGDEVDLPHSPFVVPKAPGEMFMFAVGFPFAVAYYLTILDCRRKAFHRFYPVTLLLSICWLGLLVTFMISWAEKMGCLWGIHPSLLGMTLCAAGTSMPDCLASMIVARQGEGMMAVSNALGSNIFDILFGLGFPFLLKTAVVSSGRPVAVSAEGIVGSVLLLLVLQAVFTVAVVWQRC-RISRPLGWAFVAAYVGFLVYCYCSLQLE 2445
            L+ +   A ++++L  +Y F  +A+VC+ YFV SL ++ E L +S DVAGATFMAAG+SAPELF +L+G+F+++  D GVGT+VGSAVFN+L+IIG    +  G  I +   PL RD  FY+ S+V L     D +V    +  ++++YG+Y+ +  F   + +   R     G   L  +  TTA+        G  G+                ++     S V        G+++        ++    +LHP + S     F +A+                                      LRLL                                     +    P +      G+      +   +    +RA     ++  A+ + GL A GA   ++      +   L GE++                            G    +D                                        GGG +                  D P  PFV+P        +   +P +V  Y TI DC +  + R+Y +T L S  W+ L    M+     +    GI   ++G+T  AAGTS+PDC+AS+IVARQG G MAVSN++GSNIFD+L GLGFP+ L+T +VS G  V ++++G+V SV+LLL      TV  V   C R+ R LG   +  Y  FL+   CS+  E
Sbjct:   79 LEQRRHGAVLLHVLCAIYMFHALAIVCDVYFVPSLEKVSENLELSQDVAGATFMAAGSSAPELFTSLIGVFITKG-DVGVGTIVGSAVFNVLVIIG-ICGIFAGQPISLSWWPLFRDAVFYILSIVVLILVIYDEKVMWWETIILISMYGIYIIIMKFNRSLYSLVERHCSRAGQPCLSSLRRTTAV--------GSIGDCDN------------DMVPLKPDSCVV------AGQDS-----GVVMVDEMMNLHPHQLS-----FSEAS--------------------------------------LRLL-------------------------------------ITPHFPPFTRLRMAGR------MVISERQRLIRARVGP-EEAGASGEEGLGANGAWGRENGTVAEGDTQPLDGERE---------------------------SGKEMGVDT---------------------------------------GGGAQPKXXXXXXXXXXXXXXXEDAPFKPFVLPDRWCVCLKWLFSWPVSVVLYCTIPDCSQPRWERWYLLTFLSSTLWIALFSYLMVWMVTIISYTLGIPEVIMGITFLAAGTSVPDCMASLIVARQGMGDMAVSNSIGSNIFDVLLGLGFPWALRTLIVSYGSVVTINSKGLVYSVILLLA-SVTLTVLCVHLNCWRLDRRLGLCLILLYAIFLL---CSIGFE 613          
BLAST of mRNA_P-wetherbeei_contig1843.2.1 vs. uniprot
Match: UPI00094E583C (sodium/potassium/calcium exchanger 3-like isoform X1 n=2 Tax=Hippocampus comes TaxID=109280 RepID=UPI00094E583C)

HSP 1 Score: 184 bits (466), Expect = 2.240e-45
Identity = 198/724 (27.35%), Postives = 303/724 (41.85%), Query Frame = 1
Query:  277 LDLQATWAGVIYLLGILYTFQGIAMVCEDYFVASLNRLVEELNVSPDVAGATFMAAGTSAPELFAALVGLFVSESSDTGVGTVVGSAVFNILIIIGGSLMVIPGGVILIELAPLARDTFFYLASLVALYYAFKDGEVTVAASGAMVAVYGLYVFVNAFWGQILAASRRLALSGGGGALL-VNETTALVAGAGAAAGPYGEAPTGEAARAAFATRLSLMSHTRQSVVSHFYGLREGEEALEFEVAAPLLRTYSSLHPKERSHVEEIFEQAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVISVPLRLLTVTLRREAVLSSATGPGTVWDDLFQALALCGDDASLTLGDFMPMYMTWNQCGKVWKLRPLYTDDDVACMRAAFAEHQDPAAAADAGLAAAGALSYDSVRRCADELLGLSGEQKWSLFELFDLSRTGDVSLPCFLMTFALWLGYRRALDAHAEGAAGQPAPWDSAAAVGDGAAEGXXXXXXXVTATAGDGGGKRASIMNYSVVHDFMPGDEVDLPHSPFVVPKAPGEMFMFAVGFPFAVAYYLTILDCRRKAFHRFYPVTLLLSICWLGLLVTFMISWAEKMGCLWGIHPSLLGMTLCAAGTSMPDCLASMIVARQGEGMMAVSNALGSNIFDILFGLGFPFLLKTAVVSSGRPVAVSAEGIVGSVLLLLVLQAVFTVAVVWQRCRISRPLGWAFVAAYVGFLVYCYCSLQLE 2445
            L+ +   A V+++L  +Y F  +A+VC+ YFV SL ++ E L +S DVAGATFMAAG+SAPELF +L+G+F+++  D GVGT+VGSAVFNIL+IIG    +  G  I +   PL RD  FY+ S++ L     D +V    +  ++++YG+Y+ +  F   + + + R     G   L  +   TA+        G  G+           A  + L S +  +VV    G+   +E L             + HP + +     F +A+                                      LRLL  +                                       P Y      G+         ++    +RA     +D  A+AD G  A G+                 G +  S+ E        D           L  G R A +   E              VGD AA+                     +            GDE + P  PF++P        + + +P ++  + T+ DC    + R+Y +T L S  W+ L    M+     +    GI   ++G+T  AAGTS+PDC+AS+IVAR+G G MAVSN++GSNIFD+L GLGFP+ L+T +VS    V +++ G+V SV+LLL    +  + V   R ++ R LG   +  Y  FL   +CS+  E
Sbjct:   83 LEQRRQGAVVLHVLCAIYMFHALAIVCDVYFVPSLEKVSENLQLSQDVAGATFMAAGSSAPELFTSLIGVFITKG-DVGVGTIVGSAVFNILVIIG-ICGIFAGQPICLSWWPLFRDAVFYILSIIVLIVVIYDEKVQWWETVILISMYGIYIIIMKFNSYLCSLAERYCSKAGQPCLSGLRRATAV--------GNAGDCD---------ADNVPLKSDSC-AVVGQDSGVMMVDELL-------------NQHPHQLT-----FSEAS--------------------------------------LRLLITS-------------------------------------HFPPYTRLRMAGRT------VINERQRLIRAQVGA-KDGGASADDGCGAGGSW----------------GRENGSVAE-------ADCQ--------PLDAGRREAKETGRE--------------VGDAAAQ---------------------AKXXXXXXXXXAEGDE-NAPFKPFIMPNGRCVRVKWLLSWPVSLLLHCTVPDCNLPQWERWYLLTFLTSTLWIALFSYLMVWMVTIISYTLGIPDVIMGITFLAAGTSVPDCMASLIVARRGLGDMAVSNSIGSNIFDVLLGLGFPWALRTLIVSYSSVVTINSRGLVYSVILLLASVTLTVLCVHLNRWKLDRRLGLWLMLLYAIFL---FCSISFE 616          
BLAST of mRNA_P-wetherbeei_contig1843.2.1 vs. uniprot
Match: A0A2U9C6E6_SCOMX (Putative sodium/potassium/calcium exchanger 3-like n=6 Tax=Scophthalmus maximus TaxID=52904 RepID=A0A2U9C6E6_SCOMX)

HSP 1 Score: 183 bits (464), Expect = 4.400e-45
Identity = 194/727 (26.69%), Postives = 295/727 (40.58%), Query Frame = 1
Query:  277 LDLQATWAGVIYLLGILYTFQGIAMVCEDYFVASLNRLVEELNVSPDVAGATFMAAGTSAPELFAALVGLFVSESSDTGVGTVVGSAVFNILIIIGGSLMVIPGGVILIELAPLARDTFFYLASLVALYYAFKDGEVTVAASGAMVAVYGLYVFVNAFWGQILAASRRLALSGGGGALLVNETTALVAGAGAAAGPYGEAPTGEAARAAFATRLSLMSHTRQSVVSHFYGLREGEEALEFEVAAPLLRTYSSLHPKERSHVEEIFEQAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVISVPLRLLTVTLRREAVLSSATGPGTVWDDLFQALALCGDDASLTLGDFMPMYMTWNQCGKVWKLRPLYTDDDVACMRAAFAEHQDPAAAADAGLAAAGALSYDSVRRCADELLGLSGEQKWSLFELFDLSRTGDVSLPCFLMTFALWLGYRRALDAHAEGAAGQPAPW---DSAAAVGDGAA-EGXXXXXXXVTATAGDGGGKRASIMNYSVVHDFMPGDEVDLPHSPFVVPKAPGEMFMFAVGFPFAVAYYLTILDCRRKAFHRFYPVTLLLSICWLGLLVTFMISWAEKMGCLWGIHPSLLGMTLCAAGTSMPDCLASMIVARQGEGMMAVSNALGSNIFDILFGLGFPFLLKTAVVSSGRPVAVSAEGIVGSVLLLLVLQAVFTVAVVWQRCRISRPLGWAFVAAYVGFLVYCYCSLQLE 2445
            L+ +   A ++++L  +Y F  +A+VC+ YFV SL ++ E L +S DVAGATFMAAG+SAPELF +L+G+F+++  D GVGT+VGSAVFNIL+IIG    +  G  I +   PL RD  FY+ S++ L     D +V    +  ++++YGLY+ +  F   + +      L  G         TA V  AG           G  ARA                   +  +  G++     +  P++    + HP + S     F +A+                                      LRLL                                     +    P        G+      L  ++    +RA   + +  A+                     +E LG SG                                                 PW   + + A GDG   EG       V    GDG   +                E + P  PF+VP        + + +P ++  + TI DC    + R+Y +T L S  W+ L    M+     +    GI   ++G+T  AAGTS+PDC+AS+IVARQG G MAVSN++GSNIFD+L GLGFP+ L+T +VS G  V ++++G+V SV+LLL    +  + +     R+ R LG + +  Y  FL+   C++  E
Sbjct:   82 LEQRRHGAVLLHVLCAIYMFHALAIVCDVYFVPSLEKVSENLQLSQDVAGATFMAAGSSAPELFTSLIGVFITKG-DVGVGTIVGSAVFNILVIIG-LCGIFSGQPISLSWWPLFRDALFYILSILVLILVIYDEKVVWWETIILISMYGLYIIIMKFNRSLRSLVETHCLREGRPCFSGLRRTAAVGNAGDCDNDMVPLKPGAGARA-------------------YACVVAGQD-----LGVPMVDEQLNPHPHQLS-----FSEAS--------------------------------------LRLL-------------------------------------ITPHFPPLTRLRMAGR------LVINERQRLIRARVGQEEGGASG--------------------EEGLGTSG-------------------------------------------------PWGRENGSVAEGDGQTLEGERERGKEVGGRKGDGAPSKEEXXXXXXXXXXQ---EENSPFKPFIVPDGWCVRVKWLLSWPVSLLLHCTIPDCSLPQWERWYLLTFLSSTLWIALFSYLMVWMVTIISYTLGIPEVIMGITFLAAGTSVPDCMASLIVARQGMGDMAVSNSIGSNIFDVLLGLGFPWALRTLIVSFGSVVTINSKGLVYSVILLLASVILTVLCIQLNHWRLDRRLGLSLLLLYAVFLL---CAVGFE 621          
BLAST of mRNA_P-wetherbeei_contig1843.2.1 vs. uniprot
Match: A0A6I9N3T4_9TELE (sodium/potassium/calcium exchanger 3-like n=7 Tax=Notothenioidei TaxID=8205 RepID=A0A6I9N3T4_9TELE)

HSP 1 Score: 182 bits (461), Expect = 1.010e-44
Identity = 199/725 (27.45%), Postives = 286/725 (39.45%), Query Frame = 1
Query:  298 AGVIYLLGILYTFQGIAMVCEDYFVASLNRLVEELNVSPDVAGATFMAAGTSAPELFAALVGLFVSESSDTGVGTVVGSAVFNILIIIGGSLMVIPGGVILIELAPLARDTFFYLASLVALYYAFKDGEVTVAASGAMVAVYGLYVFVNAFWGQILAASRRLALSGGGGALLVNETTALVAGAGAAAGPYGEAPTGEAARAAFATRLSLMSHTRQSVVSHFYGLREGEEALEFEVAAPLLRTYSSLHPKERSHVEEIFEQAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVISVPLRLLTVTLRREAVLSSATGPGTVWDDLFQALALCGDDASLTLGDFMPMYMTWNQCGKVWKLRPLYTDDDVACMRAAFAEHQDPAAAADAGLAAAGALSYDSVRRCADELLGLSGEQKWSLFELFDLSRTGDVSLPCFLMTFALWLGYRRALDAHAEGAAGQPAPW---DSAAAVGDGAA-EGXXXXXXXVTATAGDGGG-----KRASIMNYSVVHDFMPGDEVDLPHSPFVVPKAPGEMFMFAVGFPFAVAYYLTILDCRRKAFHRFYPVTLLLSICWLGLLVTFMISWAEKMGCLWGIHPSLLGMTLCAAGTSMPDCLASMIVARQGEGMMAVSNALGSNIFDILFGLGFPFLLKTAVVSSGRPVAVSAEGIVGSVLLLLVLQAVFTVAVVWQRCRISRPLGWAFVAAYVGFLVYCYCSLQLE 2445
            A ++++L  +Y F  +A+VCE YFV SL ++ E L +S DVAGATFMAAG+SAPELF +L+G+F+++  D GVGT+VGSAVFNIL+IIG    +  G  I +   PL RD FFY+ S++ L     D +V    +  ++++YG+Y+ +  F   + +   R    GG                                               Q  +S    LR G              T  +L   +                                                       V L+ ++ +++   PG V  D                              ++  L P       A +R     H  P                          LG++G    S  +    +R G V                    A  E   G    W   + AA  GD    EG          T G+ GG                         D P  PFVVPK       + + +P +V  Y TI DC    + R+Y ++ L S  W+ L    M+     +    GI   L+G+T  AAGTS+PDCLAS+IVARQG G MAVSN++GSNIFD+L GLGFP+ L+T +VS G  V +++ G+V SV+LLL    +  + V     ++ R LG+  +  YV FL+   CS+  E
Sbjct:   87 AVLLHVLCAMYMFYALAIVCEVYFVPSLEKISENLQLSQDVAGATFMAAGSSAPELFTSLIGVFITKG-DVGVGTIVGSAVFNILVIIG-LCGIFAGQPITLSWWPLFRDAFFYILSILVLILVIYDEKVMWWETIILMSMYGVYIVIMKFNSCLCSWVERRCSRGG-----------------------------------------------QPCLS---SLRRGA-------------TVGNLGDCDND----------------------------------------------------MVPLKPDSCVAAGQDPGVVMVD------------------------------ELLNLHPHQLSFSEASLRLLITPHFPPFTR-----------------------LGMAGRMVISERQRLIQARGGSVEG-----------------GASGEEGLGANGAWGRENGAATEGDRQPLEGERGKE-----TEGETGGGAQPKDEEXXXXXXXXXXXXXXXXEDAPLKPFVVPKGVCLRLRWLLSWPLSVLLYFTIPDCSLPRWERWYLLSFLSSTLWIALYSYLMVWMMTIISNTLGIPEVLMGITFLAAGTSVPDCLASLIVARQGMGDMAVSNSIGSNIFDVLLGLGFPWALRTLIVSYGSVVTINSRGLVYSVILLLASVVLTVLCVHLNGWKLDRRLGFCLILLYVLFLL---CSVGFE 616          
BLAST of mRNA_P-wetherbeei_contig1843.2.1 vs. uniprot
Match: UPI001864B9CC (sodium/potassium/calcium exchanger 3-like n=1 Tax=Megalops cyprinoides TaxID=118141 RepID=UPI001864B9CC)

HSP 1 Score: 181 bits (458), Expect = 1.130e-44
Identity = 203/719 (28.23%), Postives = 298/719 (41.45%), Query Frame = 1
Query:  298 AGVIYLLGILYTFQGIAMVCEDYFVASLNRLVEELNVSPDVAGATFMAAGTSAPELFAALVGLFVSESSDTGVGTVVGSAVFNILIIIGGSLMVIPGGVILIELAPLARDTFFYLASLVALYYAFKDGEVTVAASGAMVAVYGLYVFVNAFWGQILAASRRLALSGGGGALLVNETTALVAGAGAAAGPYGEAPTGEAARAAFATRLSLMSHTRQSVVSHFYGLREGEEALEFEVAAPLLRTYSSLHPKERSHVEEIFEQAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVISVPLRLLTVTLRREAVLS------SATGPGTVWDDLFQALALCGDDASLTLGDFMPMYMTWNQCGKVWKLRPLYTDDDVACMRAAFAEHQDPAAAADAGLAAAGALSYDSVRRCADELLGLSGEQKWSLFELFDLSRTGDVSLPCFLMTFALWLGYRRALDAHAEGAAGQPAPWDSAAAVGDGAAEGXXXXXXXVTATAGDGGGKRASIMNYSVVHDFMPGDEVDLPHSPFVVPKAPGEMFMFAVGFPFAVAYYLTILDCRRKAFHRFYPVTLLLSICWLGLLVTFMISWAEKMGCLWGIHPSLLGMTLCAAGTSMPDCLASMIVARQGEGMMAVSNALGSNIFDILFGLGFPFLLKTAVVSSGRPVAVSAEGIVGSVLLLLVLQAVFTVAVVWQRCRISRPLGWAFVAAYVGFLVYCYCSL 2436
            A ++++L  +Y F  +A+VC++YFV SL ++ E L++S DVAGATFMAAG+SAPELF +L+G+F+++  D GVGT+VGSAVFNIL+IIG    +  G  + +   PL RD  FY+ S++AL     D +V    S  +V++YGLY+ +  F  QI     +   S     L      +  A  GAA G                      ++   S V    G   G E+    V   L     SLHP + S     F +A                                   +S+  R+L +  R+  + S      S  GPG     + ++ +  G D SL +          N C    + +PL                 D AA  DA                 DE  GL GE                              G  R+     E                                                        D+ D P  P  +PK       +   +P A   Y T+ +C    +HR++ VT +LS  W+ +    M+     +     I   ++G+T  AAGTS+PDC+AS+IVARQG G MAVSN++GSNIFDIL GLGFP+ L+T VV  G  V+++ +G+V SV+LLL    +  ++V     ++ + LG+  +  Y  FL+   CS+
Sbjct:   34 AVLLHVLCAIYMFYALAIVCDEYFVPSLEKISENLHLSEDVAGATFMAAGSSAPELFTSLIGVFITKG-DVGVGTIVGSAVFNILVIIGVC-GIFAGQTVSLTWWPLFRDCVFYIFSVLALILVIYDEKVLWWESVLLVSLYGLYILIMKFNIQIWRFVEQRCRS----PLQSCMNRSRHADGGAAEGG---------------------ANCDTSDVLLRKGQCSGPESPVMMVDELL-----SLHPHQLS-----FSEAGLRIMITPHFSPRTR--------------------LSMAGRML-INERQRLIRSPGGSTDSEVGPGD--SPVKESGSRFGADCSLVME---------NGCSPESERQPL-----------------DEAANGDA-----------------DERAGLKGEA-----------------------------GAERSCPGEEE-------------------------------------------------------EDDGDGPFRPLNMPKGGCARVKWLASWPLAFLLYCTVPNCVLPRWHRWFMVTFVLSTLWIAVFSYLMVWMVTIISHTLDIPDFIMGITFLAAGTSVPDCMASLIVARQGMGDMAVSNSIGSNIFDILLGLGFPWTLRTLVVGFGSTVSINNKGLVYSVILLLASVCLTVMSVHLNHWKLDKRLGFGLMLLYAIFLL---CSI 562          
BLAST of mRNA_P-wetherbeei_contig1843.2.1 vs. uniprot
Match: A0A2R5G3D0_9STRA (Sodium/potassium/calcium exchanger 1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G3D0_9STRA)

HSP 1 Score: 182 bits (462), Expect = 1.160e-44
Identity = 202/732 (27.60%), Postives = 307/732 (41.94%), Query Frame = 1
Query:  265 FFDPLDLQATWAGV-IYLLGILYTFQGIAMVCEDYFVASLNRLVEELNVSPDVAGATFMAAGTSAPELFAALVGLFVSESSDTGVGTVVGSAVFNILIIIGGSLMVIPGGVILIELAPLARDTFFYLASLVALYYAFKDGEVTVAASGAMVAVYGLYVFVNAFWGQILAASRRLALSGGGGALLVNETTALVAGAGAAAGPYGEAPTGEAARAA-FATRLSLMSHTRQSVVSHFYGLREGEEALEFEVAAPLLRTYSSLHPKERSHVEEIFEQAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVISVPLRLLTVTLRREAVLSSATGPGTVWDDLFQALALCGDDASLTLGDFMP-MYMTWNQCGKVWKLRPLYTDDDVACMRAAFAEHQDPAAAADAGLAAAGALSYDSVRRCADELLGLSGEQKWSLFELFDLSRTGDVSLPCFLMTFALWLGYRRALDAHAEGAAGQPAPWDSAAAVGDGAAEGXXXXXXXVTATAGDGGGKRASIMNYSVVHDFMPGDEVDLPHSPFVVPKA-PGEMFMFAVGFPFAVAYYLTILDCRRKAFHRFYPVTLLLSICWLGLLVTFMISWAEKMGCLWGIHPSLLGMTLCAAGTSMPDCLASMIVARQGEGMMAVSNALGSNIFDILFGLGFPFLLKTAVVSSGRPVAVSAEGIVGSVLLLLVLQAVFTVAVVWQRCRISRPLGWAFVAAYVGFLVYCYCSLQLEL 2448
            FFD  + Q    G+ +++  I Y F G+A+VC++YF +SL+ L E+L +  DVAGATFMAAG SAPELF++++G+FV++S D G GT+VGSA FN+L +I     V     + +   PL RD  FY  S+V L     D E+ V+ S A++ +Y LY+ V  F                    L    TA +                EAA+A  +  RL L +       ++F         +   + A ++  +  +   E +  + I    +A                                        L V +  E VLSS++  G +                L +  F+  +++      + WK+  L   +++    AA      P                 S    A   L L G            S + D  L                L A AE A  Q                        V AT                       +    P +PF +P   P ++F++A+ FP ++  +LTI DCRR  F RFY +T L+ I W+ LL   M+  A   G    I   ++G+TL AAGTS+PD ++S+ VA++G G MAVS+++GSNIFDIL GL  P+ + TA+V+ G  V + ++GI   VL L ++ A     + W    +++ LG A +A Y  F+     SL LE+
Sbjct:   44 FFD--ETQKDSGGILVHIFLIFYMFMGLAIVCDEYFESSLSALCEDLKLKEDVAGATFMAAGGSAPELFSSIIGVFVAKS-DIGFGTIVGSATFNVLFVIAACAFVTNN--LALSWWPLTRDCVFYCISIVVLVTCIIDQEIAVSDSVALLIMYCLYITVMYF-----------------NEALEKWVTARM----------------EAAKAPRYGWRLRLENFLEHDYFNYF---------IYMVIIANIVVIFVEVANGESNATQAINSWCSAVFIAEMALKIAALSFFGYWHNPVNAFDGT-----------LVVLILIEMVLSSSSFSGGLRALXXXXXXXXXXXXXLYMASFVEKIHVATQTTAEDWKM--LEVVENMTAEEAAQYALPCPTR---------------STTAVAPVRLSLRGS-----------SLSEDPKLE--------------GLIAEAEAAQRQ-------------------RQETTVKATRSSXXXXXXXXXXXXXXXXXXXXE----PCNPFELPDGGPFDLFLWALAFPLSLGMFLTIPDCRRPIFKRFYMLTFLMCIVWIALLSYVMVWMATIFGEFACIPQPIMGLTLLAAGTSVPDLMSSIAVAKRGLGDMAVSSSVGSNIFDILIGLPVPWFISTAIVNPGETVPIRSDGITIMVLTLFIMVAAVVSIIHWCNWVMTKKLGIAMMALYAAFVAE---SLILEM 649          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1843.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6P4ZZA4_BRABE1.860e-5028.47sodium/potassium/calcium exchanger 4-like n=2 Tax=... [more]
A0A267FD71_9PLAT1.340e-4630.06Uncharacterized protein n=3 Tax=Macrostomum lignan... [more]
UPI001C0425921.460e-4626.93sodium/potassium/calcium exchanger 3-like isoform ... [more]
UPI00159C26C52.760e-4626.21sodium/potassium/calcium exchanger 3 isoform X1 n=... [more]
A0A4U5UG04_COLLU8.680e-4626.76Sodium/potassium/calcium exchanger 3 n=26 Tax=Perc... [more]
UPI00094E583C2.240e-4527.35sodium/potassium/calcium exchanger 3-like isoform ... [more]
A0A2U9C6E6_SCOMX4.400e-4526.69Putative sodium/potassium/calcium exchanger 3-like... [more]
A0A6I9N3T4_9TELE1.010e-4427.45sodium/potassium/calcium exchanger 3-like n=7 Tax=... [more]
UPI001864B9CC1.130e-4428.23sodium/potassium/calcium exchanger 3-like n=1 Tax=... [more]
A0A2R5G3D0_9STRA1.160e-4427.60Sodium/potassium/calcium exchanger 1 n=1 Tax=Honda... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1843contigP-wetherbeei_contig1843:2479..6525 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog215358.XP_010747988.1
PFAMsNa_Ca_ex
Model size2751
Max annot lvl33208|Metazoa
KEGG koko:K13751
KEGG TC2.A.19.4
Hectar predicted targeting categorysignal peptide
Exons6
Evalue2.51e-46
EggNOG OGsCOG0530@1|root,KOG1307@2759|Eukaryota,3AH11@33154|Opisthokonta,3BXKF@33208|Metazoa,3DFRJ@33213|Bilateria,48HKK@7711|Chordata,49FRG@7742|Vertebrata,4A5VD@7898|Actinopterygii
DescriptionBelongs to the Ca(2 ) cation antiporter (CaCA) (TC 2.A.19) family
Cds size2346
COG categoryPT
BRITEko00000,ko02000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1843.2.1prot_P-wetherbeei_contig1843.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1843 2773..6414 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186145.7345717-UTR-P-wetherbeei_contig1843:2478..27721683186145.7345717-UTR-P-wetherbeei_contig1843:2478..2772Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1843 2479..2772 -
1683186145.8064356-UTR-P-wetherbeei_contig1843:6414..65251683186145.8064356-UTR-P-wetherbeei_contig1843:6414..6525Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1843 6415..6525 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186145.747697-CDS-P-wetherbeei_contig1843:2772..32391683186145.747697-CDS-P-wetherbeei_contig1843:2772..3239Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1843 2773..3239 -
1683186145.7574115-CDS-P-wetherbeei_contig1843:3535..41661683186145.7574115-CDS-P-wetherbeei_contig1843:3535..4166Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1843 3536..4166 -
1683186145.7652087-CDS-P-wetherbeei_contig1843:4492..51671683186145.7652087-CDS-P-wetherbeei_contig1843:4492..5167Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1843 4493..5167 -
1683186145.7727108-CDS-P-wetherbeei_contig1843:5413..57371683186145.7727108-CDS-P-wetherbeei_contig1843:5413..5737Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1843 5414..5737 -
1683186145.7803195-CDS-P-wetherbeei_contig1843:6002..60161683186145.7803195-CDS-P-wetherbeei_contig1843:6002..6016Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1843 6003..6016 -
1683186145.7897146-CDS-P-wetherbeei_contig1843:6179..64141683186145.7897146-CDS-P-wetherbeei_contig1843:6179..6414Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1843 6180..6414 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1843.2.1

>prot_P-wetherbeei_contig1843.2.1 ID=prot_P-wetherbeei_contig1843.2.1|Name=mRNA_P-wetherbeei_contig1843.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=782bp
MKGSGFLRLRLRLVVVGVVLFVGLALSWSQEPSGSSRKLDDVDEAACEGG
GFFDPLDLQATWAGVIYLLGILYTFQGIAMVCEDYFVASLNRLVEELNVS
PDVAGATFMAAGTSAPELFAALVGLFVSESSDTGVGTVVGSAVFNILIII
GGSLMVIPGGVILIELAPLARDTFFYLASLVALYYAFKDGEVTVAASGAM
VAVYGLYVFVNAFWGQILAASRRLALSGGGGALLVNETTALVAGAGAAAG
PYGEAPTGEAARAAFATRLSLMSHTRQSVVSHFYGLREGEEALEFEVAAP
LLRTYSSLHPKERSHVEEIFEQAAAAETFSDDDGGAGGAADGKYNGGEEE
AGGGGGEVISVPLRLLTVTLRREAVLSSATGPGTVWDDLFQALALCGDDA
SLTLGDFMPMYMTWNQCGKVWKLRPLYTDDDVACMRAAFAEHQDPAAAAD
AGLAAAGALSYDSVRRCADELLGLSGEQKWSLFELFDLSRTGDVSLPCFL
MTFALWLGYRRALDAHAEGAAGQPAPWDSAAAVGDGAAEGAASAAASVTA
TAGDGGGKRASIMNYSVVHDFMPGDEVDLPHSPFVVPKAPGEMFMFAVGF
PFAVAYYLTILDCRRKAFHRFYPVTLLLSICWLGLLVTFMISWAEKMGCL
WGIHPSLLGMTLCAAGTSMPDCLASMIVARQGEGMMAVSNALGSNIFDIL
FGLGFPFLLKTAVVSSGRPVAVSAEGIVGSVLLLLVLQAVFTVAVVWQRC
RISRPLGWAFVAAYVGFLVYCYCSLQLELWG*
back to top

mRNA from alignment at P-wetherbeei_contig1843:2479..6525-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1843.2.1 ID=mRNA_P-wetherbeei_contig1843.2.1|Name=mRNA_P-wetherbeei_contig1843.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=4047bp|location=Sequence derived from alignment at P-wetherbeei_contig1843:2479..6525- (Phaeothamnion wetherbeei SAG_119_79)
GCGCTCTCTCCGTGCGTTGCGTGCGGTAGCGGAAGTCGCGGTTCGGCCCA AGCGGCCGCTTATCTCACTCTTTCTTCGGCGACGAAAGTGAGGAAATCTC TCATCCGAATCATGAAAGGAAGCGGTTTCCTGCGGCTGCGTCTCAGGCTA GTCGTCGTCGGCGTCGTCTTGTTCGTGGGGCTGGCGCTATCTTGGTCTCA AGAGCCGTCGGGATCCTCGCGAAAGCTGGACGATGTTGACGAAGCAGCTT GCGAAGGAGGAGGCTTTTTCGACCCCTTGGACTTGCAAGCCACGTGGGCC GGCGTCATTTACTTGCTCGGAATCCTCTACACATTCCAAGGAATTGGTAA GGCCACTGCTATGAAGGATCTCTTGTTTTGTTTCGTTTTCCTCAGGCGTT GTCCTTGTTGTCCTTTCTTACTCTTTCTCTTCTCACCCTCACATCCTGTT TGCTTTATCGGCCCTTGTCCCCTCGTCGCTTGCATCGACCTTTCATTATA TATGTAAAGCCATGGTGTGCGAGGTAAGCATACTAATGGAAATGGCCGAA ATTGACGCTGCACTGCCTGGACGCTTCGCAGACTCGTTTGAAACATGGCG ACGACGCGTACTCCCGCGCTATTGCATAGAAGAAGGATGCTTGTGAATTG GGTATTCGGAAAAAGCGTGCTATGTGATGGAGTTCCCCCTAATGGGATCA CAGTTTAAACCTTTTTCCTGCCTTCGTGCCGTGGACACCCTCCTCCCTCC CGCTCGAATTGCCGCAATCGCCATCGCCGCCGAACCAGGACTACTTCGTG GCGTCCCTCAACCGCCTCGTCGAAGAACTCAACGTCAGTCCCGACGTCGC CGGAGCCACCTTCATGGCTGCCGGCACCTCCGCCCCCGAGCTCTTTGCCG CCCTCGTCGGCCTCTTCGTGTCGGAGAGCAGCGACACGGGCGTCGGAACC GTCGTCGGCTCGGCGGTCTTCAACATTCTCATCATCATCGGCGGGAGCCT GATGGTGATTCCAGGCGGCGTCATCCTGATCGAGCTGGCGCCGCTCGCGC GCGATACCTTCTTCTACCTGGCTTCGCTCGTGGCGTTGTACTACGCCTTT AAGGACGGCGAGGTGTGTACGAGGCGTGTAATGGTTGACTGCCTTCATGG GTTGTCGATCTTCAGATGTGAGAGTTCAAAGGGCATATGATGCTGCACTG TGTCTTCTCCTGGATCTTCAGTGCAGTCTTTCGAACTTTTCCAACTTGCG AGATGGACCTTCTTCTAAGAGCATCTGTATTTCCTGGTGCCGAGCCGCTC TTTGGTCGTTAGCGTGTTGACATGCCTTTTCTAAGCGCGTGTATCCCTCC TCTTTCAGGTCACCGTCGCGGCGTCGGGTGCCATGGTCGCCGTCTACGGC CTCTACGTCTTCGTCAACGCCTTCTGGGGCCAGATCCTCGCCGCCTCCCG GCGTCTCGCCCTCAGCGGCGGCGGCGGCGCGCTCTTGGTCAACGAAACCA CGGCGCTCGTCGCCGGCGCCGGCGCCGCCGCTGGTCCTTACGGCGAGGCA CCGACGGGGGAGGCGGCGCGCGCGGCGTTCGCGACGCGGCTGTCGCTGAT GTCGCACACGCGGCAGAGCGTCGTGTCGCATTTCTATGGCCTCCGCGAGG GAGAGGAGGCGCTCGAGTTCGAGGTGGCTGCGCCGCTGCTACGGACGTAT TCCTCGCTTCATCCGAAGGAGCGAAGCCACGTTGAGGAGATTTTCGAGCA GGCGGCTGCTGCAGAAACGTTTAGTGATGATGACGGCGGCGCCGGTGGCG CTGCCGACGGCAAGTACAACGGCGGGGAGGAGGAAGCGGGCGGCGGCGGC GGGGAGGTGATTTCGGTGCCGCTGCGGCTGCTGACGGTGACGCTGCGGCG GGAAGCGGTGCTGTCATCGGCGACAGGGCCGGGCACTGTGTGGGACGACC TTTTCCAGGCGCTCGCCCTCTGCGGCGACGACGCCAGCCTTACCCTTGGC GACTTCATGCCGATGTACATGACCTGGAACCAGGTGTGTTTCCTACTTCC GCTCCCTGTGATGGTGGGGTCAGTCTTATGTTAGAGATTTGACCTGAAGC AAATAGACCGCCGAAATGGTTGCTCTTTTTCGTGGTTTATAGATTGCTAG GCGACGCTACGCGCCTTTGTGACGGGGAATGTGCTGGGCTGCCCTCTCTG TTCTGGTCCGTATTTAAGCCTGAGAAGGAGTGCCAAGATTACTGTTCCTG ATTCAGGCGTCCCTGTTCTCCTGTAATTGATCTTGATTGCTGCCGGGTTG CTGCTGACGCTTAACACGTTCACCGTGCTCCCCGTCTCGTTGCTTGTTTC TCGCGACAGTGCGGCAAGGTGTGGAAGCTGCGGCCACTCTACACCGACGA CGACGTCGCCTGCATGCGCGCCGCCTTTGCCGAGCATCAAGACCCCGCCG CCGCCGCCGACGCTGGGCTTGCTGCCGCGGGCGCCCTGAGCTACGACTCC GTCCGCCGCTGCGCCGACGAGCTTCTCGGCCTGTCCGGCGAGCAGAAGTG GTCGCTCTTCGAGCTGTTCGACCTCAGCCGCACCGGCGACGTCTCGCTGC CGTGCTTCCTCATGACGTTCGCGCTGTGGCTCGGCTACCGCCGCGCGCTT GATGCGCACGCCGAGGGCGCGGCCGGTCAGCCGGCGCCATGGGATTCCGC CGCCGCCGTGGGAGACGGGGCTGCCGAAGGGGCGGCGTCGGCCGCCGCGT CAGTAACGGCGACGGCCGGCGACGGCGGCGGCAAGCGGGCGAGCATCATG AACTACTCGGTAGTGCACGACTTCATGCCGGGCGACGAGGTGGACCTGCC GCACTCGCCGTTTGTGGTGCCGAAGGCGCCCGGCGAGATGTTCATGTTCG CGGTCGGTTTCCCCTTCGCCGTCGCCTACTACCTCACCATCCTCGACTGC CGCCGCAAGGCGTTTCACCGCTTCTACCCCGTCACCTTACGTGAGCTGAA AAGGCGGGGCGTGCTGCAATCCTAGGCTATTGTACTGCCTGCATATTAGA GATTCTGTTCGCGTGGTGACAGTGGAGATGCTTCCACTTCTGCGTTTATT CTATCTTATCGTCATGCGACTGCGATTAGTGGCTTGATGCCATTTCAGTC ACAAATCAATTCTTTTTCCTCTGTCACATCTGCCTTTCCCAACACACTGG CTCCGGCGGCGGTACGGACGACGGTGGCGTCCGTCATTGGCAACAAACGA ACAACGATGTCACCGGCGCCACGCACCTTCTTGCAGTGCTGTCCATCTGC TGGCTGGGGCTGCTGGTCACCTTCATGATCTCGTGGGCCGAAAAGATGGG CTGCCTGTGGGGCATTCACCCGTCGCTCCTCGGCATGACCCTCTGCGCCG CCGGCACCTCCATGCCGGACTGCCTGGCCAGCATGATCGTGGCGCGGCAG GGAGAAGGCATGATGGCTGTTTCCAACGCGCTCGGCTCCAACATTTTCGA CATTCTCTTCGGTTTGGGGTTCCCGTTCCTGCTCAAGACGGCGGTGGTGA GCTCCGGGCGGCCGGTGGCGGTCTCGGCGGAAGGCATCGTGGGGTCGGTG CTGCTGCTGCTGGTTCTACAGGCGGTGTTTACTGTGGCGGTGGTGTGGCA GCGCTGCCGCATCTCGCGGCCGCTCGGATGGGCGTTCGTCGCGGCGTACG TCGGCTTCTTGGTGTACTGCTACTGCTCGCTCCAGCTCGAGCTGTGGGGC TAGATGTAAGGGTGAGTAATTACGAGGCTTGCCTTCGTGGCTGTTGCGGT CTTGCTGGGGCCGTTGGATGGTACTGAAAAGCGGTTGACAAAGACATTTT GACTTTGAATGAGGGGGAAGGCATTAGCGTGAATTAAAGCACATTGGGAG TCTCCTGGACAACAGGGAATGAAAGGTCTGAATTCGCCGCAGCGAGGAGC GGTGCGATACAGGCAGGGAGACCAAACACGGTTCTTGTGCAGACGAGGAT TTTTTTTGCGGCAAGCAGATATAAAGGTGATTTCGGGAGAACACCCG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1843:2479..6525-

>mRNA_P-wetherbeei_contig1843.2.1 ID=mRNA_P-wetherbeei_contig1843.2.1|Name=mRNA_P-wetherbeei_contig1843.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2346bp|location=Sequence derived from alignment at P-wetherbeei_contig1843:2479..6525- (Phaeothamnion wetherbeei SAG_119_79)
ATGAAAGGAAGCGGTTTCCTGCGGCTGCGTCTCAGGCTAGTCGTCGTCGG
CGTCGTCTTGTTCGTGGGGCTGGCGCTATCTTGGTCTCAAGAGCCGTCGG
GATCCTCGCGAAAGCTGGACGATGTTGACGAAGCAGCTTGCGAAGGAGGA
GGCTTTTTCGACCCCTTGGACTTGCAAGCCACGTGGGCCGGCGTCATTTA
CTTGCTCGGAATCCTCTACACATTCCAAGGAATTGCCATGGTGTGCGAGG
ACTACTTCGTGGCGTCCCTCAACCGCCTCGTCGAAGAACTCAACGTCAGT
CCCGACGTCGCCGGAGCCACCTTCATGGCTGCCGGCACCTCCGCCCCCGA
GCTCTTTGCCGCCCTCGTCGGCCTCTTCGTGTCGGAGAGCAGCGACACGG
GCGTCGGAACCGTCGTCGGCTCGGCGGTCTTCAACATTCTCATCATCATC
GGCGGGAGCCTGATGGTGATTCCAGGCGGCGTCATCCTGATCGAGCTGGC
GCCGCTCGCGCGCGATACCTTCTTCTACCTGGCTTCGCTCGTGGCGTTGT
ACTACGCCTTTAAGGACGGCGAGGTCACCGTCGCGGCGTCGGGTGCCATG
GTCGCCGTCTACGGCCTCTACGTCTTCGTCAACGCCTTCTGGGGCCAGAT
CCTCGCCGCCTCCCGGCGTCTCGCCCTCAGCGGCGGCGGCGGCGCGCTCT
TGGTCAACGAAACCACGGCGCTCGTCGCCGGCGCCGGCGCCGCCGCTGGT
CCTTACGGCGAGGCACCGACGGGGGAGGCGGCGCGCGCGGCGTTCGCGAC
GCGGCTGTCGCTGATGTCGCACACGCGGCAGAGCGTCGTGTCGCATTTCT
ATGGCCTCCGCGAGGGAGAGGAGGCGCTCGAGTTCGAGGTGGCTGCGCCG
CTGCTACGGACGTATTCCTCGCTTCATCCGAAGGAGCGAAGCCACGTTGA
GGAGATTTTCGAGCAGGCGGCTGCTGCAGAAACGTTTAGTGATGATGACG
GCGGCGCCGGTGGCGCTGCCGACGGCAAGTACAACGGCGGGGAGGAGGAA
GCGGGCGGCGGCGGCGGGGAGGTGATTTCGGTGCCGCTGCGGCTGCTGAC
GGTGACGCTGCGGCGGGAAGCGGTGCTGTCATCGGCGACAGGGCCGGGCA
CTGTGTGGGACGACCTTTTCCAGGCGCTCGCCCTCTGCGGCGACGACGCC
AGCCTTACCCTTGGCGACTTCATGCCGATGTACATGACCTGGAACCAGTG
CGGCAAGGTGTGGAAGCTGCGGCCACTCTACACCGACGACGACGTCGCCT
GCATGCGCGCCGCCTTTGCCGAGCATCAAGACCCCGCCGCCGCCGCCGAC
GCTGGGCTTGCTGCCGCGGGCGCCCTGAGCTACGACTCCGTCCGCCGCTG
CGCCGACGAGCTTCTCGGCCTGTCCGGCGAGCAGAAGTGGTCGCTCTTCG
AGCTGTTCGACCTCAGCCGCACCGGCGACGTCTCGCTGCCGTGCTTCCTC
ATGACGTTCGCGCTGTGGCTCGGCTACCGCCGCGCGCTTGATGCGCACGC
CGAGGGCGCGGCCGGTCAGCCGGCGCCATGGGATTCCGCCGCCGCCGTGG
GAGACGGGGCTGCCGAAGGGGCGGCGTCGGCCGCCGCGTCAGTAACGGCG
ACGGCCGGCGACGGCGGCGGCAAGCGGGCGAGCATCATGAACTACTCGGT
AGTGCACGACTTCATGCCGGGCGACGAGGTGGACCTGCCGCACTCGCCGT
TTGTGGTGCCGAAGGCGCCCGGCGAGATGTTCATGTTCGCGGTCGGTTTC
CCCTTCGCCGTCGCCTACTACCTCACCATCCTCGACTGCCGCCGCAAGGC
GTTTCACCGCTTCTACCCCGTCACCTTACTGCTGTCCATCTGCTGGCTGG
GGCTGCTGGTCACCTTCATGATCTCGTGGGCCGAAAAGATGGGCTGCCTG
TGGGGCATTCACCCGTCGCTCCTCGGCATGACCCTCTGCGCCGCCGGCAC
CTCCATGCCGGACTGCCTGGCCAGCATGATCGTGGCGCGGCAGGGAGAAG
GCATGATGGCTGTTTCCAACGCGCTCGGCTCCAACATTTTCGACATTCTC
TTCGGTTTGGGGTTCCCGTTCCTGCTCAAGACGGCGGTGGTGAGCTCCGG
GCGGCCGGTGGCGGTCTCGGCGGAAGGCATCGTGGGGTCGGTGCTGCTGC
TGCTGGTTCTACAGGCGGTGTTTACTGTGGCGGTGGTGTGGCAGCGCTGC
CGCATCTCGCGGCCGCTCGGATGGGCGTTCGTCGCGGCGTACGTCGGCTT
CTTGGTGTACTGCTACTGCTCGCTCCAGCTCGAGCTGTGGGGCTAG
back to top