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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 1 |
| Model size | 2032 |
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Cds size | 1119 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1683186145.4271467-UTR-P-wetherbeei_contig1842:1503..2389 | 1683186145.4271467-UTR-P-wetherbeei_contig1842:1503..2389 | Phaeothamnion wetherbeei SAG_119_79 | UTR | P-wetherbeei_contig1842 1504..2389 - |
| 1683186145.4741518-UTR-P-wetherbeei_contig1842:4655..4682 | 1683186145.4741518-UTR-P-wetherbeei_contig1842:4655..4682 | Phaeothamnion wetherbeei SAG_119_79 | UTR | P-wetherbeei_contig1842 4656..4682 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1683186145.4370568-CDS-P-wetherbeei_contig1842:2389..2520 | 1683186145.4370568-CDS-P-wetherbeei_contig1842:2389..2520 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig1842 2390..2520 - |
| 1683186145.4463966-CDS-P-wetherbeei_contig1842:2897..2970 | 1683186145.4463966-CDS-P-wetherbeei_contig1842:2897..2970 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig1842 2898..2970 - |
| 1683186145.4557278-CDS-P-wetherbeei_contig1842:3329..3416 | 1683186145.4557278-CDS-P-wetherbeei_contig1842:3329..3416 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig1842 3330..3416 - |
| 1683186145.46504-CDS-P-wetherbeei_contig1842:3827..4655 | 1683186145.46504-CDS-P-wetherbeei_contig1842:3827..4655 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig1842 3828..4655 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig1842.2.1 >prot_P-wetherbeei_contig1842.2.1 ID=prot_P-wetherbeei_contig1842.2.1|Name=mRNA_P-wetherbeei_contig1842.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=373bp
MNFFKAPRATQRPKLGGSSLGDDADAANDAPSVARPAIGSAAALSQRRAG
DDDDSCGSGSGASLGRPQMGADSEGKAIPLEDDGAEETTSFEHASKYGGD
GFDQEDLSNAPTESTIPEDSSPGSASSPTFYSEDDGISYNDGGSGAFDDD
AGARHGFGEDSGITADAEEEEHGDLDAMGGDGGDGGGNDDAGMDAGIGLD
GEGLEEGDRSGARTIRLGRGGGGGSGSSDVEEPRDFSGLLRPRNGSFSAV
PIASASTAAAASPASDGDEAESHVDRRRSEMAGLKRRFEEVMGRAEERLQ
ESIAKVREAAEELELFLGSRIEAARHDYESYSQTEAKQLADMEETQTTIA
ACSPLLGMLPPAAPRRSGGRAR* back to topmRNA from alignment at P-wetherbeei_contig1842:1504..4682- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-wetherbeei_contig1842.2.1 ID=mRNA_P-wetherbeei_contig1842.2.1|Name=mRNA_P-wetherbeei_contig1842.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3179bp|location=Sequence derived from alignment at P-wetherbeei_contig1842:1504..4682- (Phaeothamnion wetherbeei SAG_119_79)
GGCGGAAAGGAGCGAACATTACCTGCAATGAACTTCTTTAAAGCACCGCG
TGCCACGCAGCGGCCCAAGCTGGGCGGCAGCAGCCTCGGGGACGACGCCG
ACGCGGCAAACGACGCCCCGAGCGTCGCGCGCCCGGCGATTGGAAGCGCG
GCCGCCTTGAGCCAGCGGCGAGCAGGAGACGACGACGACAGCTGCGGCAG
CGGCAGCGGCGCGTCGCTCGGCCGGCCGCAGATGGGCGCAGACTCTGAAG
GTAAGGCGATTCCTCTTGAGGACGACGGTGCCGAAGAGACGACCTCGTTC
GAGCACGCGAGCAAATACGGCGGCGATGGCTTCGACCAGGAGGATCTCAG
CAACGCGCCGACGGAATCCACGATCCCCGAGGATTCCAGCCCGGGCTCCG
CGTCCTCGCCAACGTTTTACTCGGAGGACGACGGTATCTCGTACAATGAC
GGCGGCTCCGGCGCCTTCGACGACGATGCAGGCGCGCGGCACGGCTTCGG
CGAGGACAGCGGCATCACCGCCGACGCGGAGGAAGAAGAGCATGGCGACC
TCGACGCCATGGGCGGCGACGGTGGCGATGGCGGCGGCAACGACGACGCC
GGCATGGACGCGGGCATCGGCCTGGACGGCGAGGGCCTGGAGGAGGGTGA
CCGCAGTGGCGCTAGGACCATCCGCCTGGGCCGCGGCGGCGGAGGTGGCA
GCGGCAGCAGCGACGTCGAAGAGCCGCGCGACTTCAGCGGCCTCCTGCGA
CCGCGCAACGGTTCCTTCAGCGCCGTTCCGATCGCCTCGGCCAGTACCGC
CGCCGCCGCAAGCCCCGCTTCGGACGGCGACGAGGCAGAGTCGCACGTAG
ACCGGGTGCGTTTGGGTCTGGAATTCTCTCCTTCTGTACTGGCTTCCGTG
CAGCCCGTTTTGCATTCCTTTTTTCGTGCAGCTCGGTTTCCATGTTCCGC
TTCTCTTCGTTTCTCTTTCTTTCTAAGGTTTCGGCCATCGAAGCTAGGGT
TTGGACTGAGGTTCTGGAAAGCACAACCCCTTCTTTTCATGTCGCTTTGC
GCGTCCCTTGGGCCGGAATCAGTTCAAGAGGTCGCCGACGCCCTTACCGT
TGTAGTGTTTGTGCTATCGGGTGCGGTGCGGTAAAGTGAAGTCGCTCACC
TCTCCCTGCCTGTCCCTTGCCCCTCCCGCTCCGTCATACCCTCTTCATTG
GCCGCCGCCGCCGCCGCCGTCACGTTTTCCGATCGCTGGCGCTTGCCATC
TGTTGCGGGTGCGCAGCGCCGGAGCGAAATGGCAGGGCTGAAGAGGCGCT
TCGAGGAGGTGATGGGCCGAGCCGAGGAGCGACTCCAGGAGAGCATTGCC
AAGGTGGGTCAGTCGGTCGCAGTAAGCGAAAGCGAAAACGGAGGACACAT
GTAAGATAAATTGTGTTTCTGCAACAACTCCACGGTCCAGAATTCAAAAT
CATTAATCGCTGTGGAGCGTACCTATTGATCTCTTTGATGGGAAATGAAG
ATGCCGATGTGGAGGAAGGCCAGGGGTTCATTCCTCCTTCAACCTTAATT
TTGCAGCAAAAGGCTCATAAAGGATTCGATTTGCATGCCTCGGGCTCCCT
CCTCTGCGCCGCGAGTACCTTGCCCGTCGTGCTCTTTCTTACATCTGCTT
CTCTGTTACTTGCGCTCGGCCGCTGTCGGAAAATCCGCCGCCGCCGCTTT
CCATACCGGCAGGTGCGCGAGGCGGCGGAGGAGCTGGAGCTCTTCCTCGG
CAGCCGCATCGAGGCCGCGCGCCACGACTACGAGAGTGAGTCGGTCGACC
GGTCGGGTCATGGCTGCATCATTACCTATTGGTGCTTCTCGGTTTGGGGT
GCGGGTGTTGCCGGGAAGAACTCTTGTTAGTGTGTCGGATGGGATGGATG
AGCCCGGGCAGCCCCATTCTTTCCTTGGCTTGGCGACGGCACCGATGACC
GAGCTTTTTTTTTGCGTGAGGGCTTTAGATCGCTTTTCACTCTTTGCTGC
GGGCCCCTTTTCCGCCGCTGTGCTGGGCACTGCTACGCCGGATTCCCACC
TATCTTCCTCGGCCCCTCATTGTGATGCCGACCTCTCCGCTGTCGCTGCT
GCCGCTCCCGATGCTTCCGCCGTCCCCACTTCTTCCCCCGCTGCTGCCGT
CACATTCGGCAGGCTACTCGCAAACCGAGGCGAAACAGCTGGCGGACATG
GAGGAGACCCAGACCACCATCGCCGCCTGCAGCCCGTTGTTGGGCATGCT
CCCGCCGGCGGCGCCTCGTCGCAGTGGAGGCCGCGCCCGCTGAGCACAAA
GAAATGCTGTCCGAGGGCTGCCACAGTTAGCAACTGCAGCGGCACGCGGC
GGCGGGGTGGCAGCTGCGCAGCATTGGCGGCGGCAGCCGCGGCGATGGCG
GCGACGGAGGCAGAGGTGGGGGCGGCTGCCGTCGCATCCGCGGCTGCGCT
CCCCATGAGCCCTGCGAAGCGTCGTGGGCGACAATGGGAACAGGCGGCCC
CGATGGGGAAGGGCGGCACCGGCGGCGATTTCTGCGGAGGATCCGTTCTA
GGCGGCCGCTGCTGGAGACCCCGGCGCTGCGCGTCACCGCGTTAGCCCCG
TTGATGCCCGTTCGTGGGCACATGCCGCTGCTGCCAGCTCTTTGGGAGCC
GTTCCCCAGGAAGGAATAGGGGCCTGGGTTATTTTTTTTTGTGGCACTAT
CAGAAAGCGGCAGTCGCTGCAAGACGCGCGCTACAGCCCGGCGTCGTCGT
TGATAGCGCCACGGCCCGGCATCGTCGTTGATAGCGATGGCTGCCGCTGC
ATTACCGGCGGTGACGGCTATGGCGGCGTCGATGGCAGCGGCGACAACGA
GGACGGTGGTGGCGGCAGTGCAAGCAGCAGCACGCGCTGCCTGGGCGTAT
GCTCGTTCGGCGGGCAATGCCCTGAGCGCGTTGTCGCTGCCGTCGGCGGC
TTCCCTTTGGCAGCTGTTTCTGTGTGGAGCACCCAAGCAGGTAGGTTATG
GGGGCGACGCCGCGCTTCCCGCAGGTGGGAAGCTTATCAGCGACAGAAAC
AATATCTAGCAAAAGGGGCGCGGAAACGATGGCGCGCAGCCGCAGCAGCA
GTCCTCAAATTGTCAATCAAATGCTGCTAGCCCAGTTGGGTCCTCGTAGC
TGCTGAGCAGAAGAGCAAAGGAAGCTGCA back to topCoding sequence (CDS) from alignment at P-wetherbeei_contig1842:1504..4682- >mRNA_P-wetherbeei_contig1842.2.1 ID=mRNA_P-wetherbeei_contig1842.2.1|Name=mRNA_P-wetherbeei_contig1842.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1119bp|location=Sequence derived from alignment at P-wetherbeei_contig1842:1504..4682- (Phaeothamnion wetherbeei SAG_119_79)
ATGAACTTCTTTAAAGCACCGCGTGCCACGCAGCGGCCCAAGCTGGGCGG
CAGCAGCCTCGGGGACGACGCCGACGCGGCAAACGACGCCCCGAGCGTCG
CGCGCCCGGCGATTGGAAGCGCGGCCGCCTTGAGCCAGCGGCGAGCAGGA
GACGACGACGACAGCTGCGGCAGCGGCAGCGGCGCGTCGCTCGGCCGGCC
GCAGATGGGCGCAGACTCTGAAGGTAAGGCGATTCCTCTTGAGGACGACG
GTGCCGAAGAGACGACCTCGTTCGAGCACGCGAGCAAATACGGCGGCGAT
GGCTTCGACCAGGAGGATCTCAGCAACGCGCCGACGGAATCCACGATCCC
CGAGGATTCCAGCCCGGGCTCCGCGTCCTCGCCAACGTTTTACTCGGAGG
ACGACGGTATCTCGTACAATGACGGCGGCTCCGGCGCCTTCGACGACGAT
GCAGGCGCGCGGCACGGCTTCGGCGAGGACAGCGGCATCACCGCCGACGC
GGAGGAAGAAGAGCATGGCGACCTCGACGCCATGGGCGGCGACGGTGGCG
ATGGCGGCGGCAACGACGACGCCGGCATGGACGCGGGCATCGGCCTGGAC
GGCGAGGGCCTGGAGGAGGGTGACCGCAGTGGCGCTAGGACCATCCGCCT
GGGCCGCGGCGGCGGAGGTGGCAGCGGCAGCAGCGACGTCGAAGAGCCGC
GCGACTTCAGCGGCCTCCTGCGACCGCGCAACGGTTCCTTCAGCGCCGTT
CCGATCGCCTCGGCCAGTACCGCCGCCGCCGCAAGCCCCGCTTCGGACGG
CGACGAGGCAGAGTCGCACGTAGACCGGCGCCGGAGCGAAATGGCAGGGC
TGAAGAGGCGCTTCGAGGAGGTGATGGGCCGAGCCGAGGAGCGACTCCAG
GAGAGCATTGCCAAGGTGCGCGAGGCGGCGGAGGAGCTGGAGCTCTTCCT
CGGCAGCCGCATCGAGGCCGCGCGCCACGACTACGAGAGCTACTCGCAAA
CCGAGGCGAAACAGCTGGCGGACATGGAGGAGACCCAGACCACCATCGCC
GCCTGCAGCCCGTTGTTGGGCATGCTCCCGCCGGCGGCGCCTCGTCGCAG
TGGAGGCCGCGCCCGCTGA back to top
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