mRNA_P-wetherbeei_contig18404.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18404.1.1
Unique NamemRNA_P-wetherbeei_contig18404.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig18404.1.1 vs. uniprot
Match: D8LBR5_ECTSI (Vesicle coat complex COPII, subunit SEC31 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBR5_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 3.220e-16
Identity = 37/67 (55.22%), Postives = 50/67 (74.63%), Query Frame = 1 
Query:    4 VLYDKMGKGVLEAEVLAKVSQFVALLQSRETHGATAVHTDLVNTAWGAHKDWLKGIKHLTTLVAKKL 204
            +L+ KMG+G +E E LAKV Q V  LQ+R+   A AV   L N+AW +HKDWLKG+K+LTTLV+++L
Sbjct:  875 ILFGKMGRGQVEQETLAKVGQLVESLQARDIKRAGAVQQGLANSAWASHKDWLKGLKYLTTLVSRRL 941
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BLAST of mRNA_P-wetherbeei_contig18404.1.1 vs. uniprot
Match: A0A6H5KCD9_9PHAE (WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCD9_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 6.040e-16
Identity = 37/67 (55.22%), Postives = 49/67 (73.13%), Query Frame = 1 
Query:    4 VLYDKMGKGVLEAEVLAKVSQFVALLQSRETHGATAVHTDLVNTAWGAHKDWLKGIKHLTTLVAKKL 204
            +L+ KMG+G LE E LAKV   V  LQ+R+   A AV   L N+AW +HKDWLKG+K+LTTLV+++L
Sbjct: 1221 ILFGKMGRGQLEQETLAKVGHLVESLQARDIKRAGAVQQGLANSAWASHKDWLKGLKYLTTLVSRRL 1287
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BLAST of mRNA_P-wetherbeei_contig18404.1.1 vs. uniprot
Match: A0A482RQQ0_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RQQ0_9ARCH)

HSP 1 Score: 63.5 bits (153), Expect = 1.130e-11
Identity = 29/67 (43.28%), Postives = 44/67 (65.67%), Query Frame = 1 
Query:    1 AVLYDKMGKGVLEAEVLAKVSQFVALLQSRETHGATAVHTDLVNTAWGAHKDWLKGIKHLTTLVAKK 201
            A L +K+    ++  VLAK+  F+  + +R   GA+AV TDL NTAW  HK+W+KG+K+L  L ++K
Sbjct:   20 AALQEKIRANEVDGGVLAKLGVFMEHMANRNFPGASAVQTDLANTAWSEHKEWVKGLKNLIQLASRK 86
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BLAST of mRNA_P-wetherbeei_contig18404.1.1 vs. uniprot
Match: A0A7S2KGC2_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KGC2_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 6.240e-11
Identity = 29/67 (43.28%), Postives = 42/67 (62.69%), Query Frame = 1 
Query:    4 VLYDKMGKGVLEAEVLAKVSQFVALLQSRETHGATAVHTDLVNTAWGAHKDWLKGIKHLTTLVAKKL 204
            +L  KM +G++  +V  KV +  + +Q+R  HGAT++ T LVN+ W  HKDWL+G K L  L  K L
Sbjct: 1033 ILVKKMARGMVTGDVCDKVGELASAIQNRNYHGATSIQTQLVNSEWKLHKDWLRGTKLLIQLATKFL 1099
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18404.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LBR5_ECTSI3.220e-1655.22Vesicle coat complex COPII, subunit SEC31 n=1 Tax=... [more]
A0A6H5KCD9_9PHAE6.040e-1655.22WW domain-containing protein n=1 Tax=Ectocarpus sp... [more]
A0A482RQQ0_9ARCH1.130e-1143.28Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S2KGC2_9STRA6.240e-1143.28Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18404contigP-wetherbeei_contig18404:1050..1256 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LBR5
PFAMsSec16_C,WD40,WW
Model size207
Max annot lvl2759|Eukaryota
KEGG koko:K14005
KEGG Pathwayko04141,map04141
KEGG ModuleM00404
Hectar predicted targeting categoryother localisation
GOsGO:0006810,GO:0006886,GO:0006888,GO:0008104,GO:0008150,GO:0015031,GO:0015833,GO:0016192,GO:0033036,GO:0034613,GO:0042886,GO:0045184,GO:0046907,GO:0048193,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705
Exons1
Evalue6.02e-15
EggNOG OGsKOG0307@1|root,KOG0307@2759|Eukaryota
Descriptionvesicle-mediated transport
Cds size189
COG categoryS
BRITEko00000,ko00001,ko00002,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186145.033941-CDS-P-wetherbeei_contig18404:1049..12381683186145.033941-CDS-P-wetherbeei_contig18404:1049..1238Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18404 1050..1238 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186145.0457203-UTR-P-wetherbeei_contig18404:1238..12561683186145.0457203-UTR-P-wetherbeei_contig18404:1238..1256Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig18404 1239..1256 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18404.1.1prot_P-wetherbeei_contig18404.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18404 1050..1238 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18404.1.1

>prot_P-wetherbeei_contig18404.1.1 ID=prot_P-wetherbeei_contig18404.1.1|Name=mRNA_P-wetherbeei_contig18404.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=63bp
MGKGVLEAEVLAKVSQFVALLQSRETHGATAVHTDLVNTAWGAHKDWLKG
IKHLTTLVAKKL*
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mRNA from alignment at P-wetherbeei_contig18404:1050..1256-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18404.1.1 ID=mRNA_P-wetherbeei_contig18404.1.1|Name=mRNA_P-wetherbeei_contig18404.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=207bp|location=Sequence derived from alignment at P-wetherbeei_contig18404:1050..1256- (Phaeothamnion wetherbeei SAG_119_79)
GCAGTGTTGTACGACAAGATGGGCAAGGGGGTGCTGGAAGCGGAGGTGCT
GGCCAAGGTGTCGCAGTTCGTGGCGCTGCTGCAGAGCCGCGAGACGCACG
GGGCGACGGCCGTACACACCGACCTTGTCAACACGGCGTGGGGCGCGCAC
AAGGACTGGCTCAAGGGCATCAAGCACCTCACCACACTCGTTGCCAAGAA
ACTCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18404:1050..1256-

>mRNA_P-wetherbeei_contig18404.1.1 ID=mRNA_P-wetherbeei_contig18404.1.1|Name=mRNA_P-wetherbeei_contig18404.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=189bp|location=Sequence derived from alignment at P-wetherbeei_contig18404:1050..1256- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGCAAGGGGGTGCTGGAAGCGGAGGTGCTGGCCAAGGTGTCGCAGTT
CGTGGCGCTGCTGCAGAGCCGCGAGACGCACGGGGCGACGGCCGTACACA
CCGACCTTGTCAACACGGCGTGGGGCGCGCACAAGGACTGGCTCAAGGGC
ATCAAGCACCTCACCACACTCGTTGCCAAGAAACTCTGA
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