mRNA_P-wetherbeei_contig1840.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1840.1.1
Unique NamemRNA_P-wetherbeei_contig1840.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig1840.1.1 vs. uniprot
Match: D7FQD0_ECTSI (Smc4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQD0_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 5.120e-23
Identity = 69/173 (39.88%), Postives = 93/173 (53.76%), Query Frame = 2 
Query:  929 RLTEIYIHGFRSFRAPTTVPVRAAGGLICIAGPNGSGKSTLIDAVLFGLGAAAADVGARQAADLATAPQAEVRLTFRPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAPLVVSSSVSKATGQRAYALGGRRLPKARFDALVASRIGLALDAPCWRIGQHSVARV 1447
            +L  + + GF+S+ +   V V    GL CI GPNGSGKSTL++A+LFGLG  A  +GA+Q A+LA+A  AEV L FR  +                                   DA   VSS+VS+A GQR YA  G+RLPK RFD  + +R+G+A   P WR+ Q  + R+
Sbjct:   35 KLQSVTVSGFKSWTSTARV-VFGHDGLSCITGPNGSGKSTLLNAILFGLGENANQLGAKQNAELASAAHAEVELLFRGVSRGVS-------------------------------DAK--VSSAVSRANGQRTYAFNGQRLPKHRFDHFLRTRLGIATGNPFWRVSQDGIHRL 173
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1840.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQD0_ECTSI5.120e-2339.88Smc4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 Rep... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1840contigP-wetherbeei_contig1840:699..2747 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog546264.NEIFLAOT_01899
Preferred namesmc
PFAMsSMC_N,SMC_hinge
Model size1634
Max annot lvl206351|Neisseriales
KEGG koko:K03529
Hectar predicted targeting categoryother localisation
Exons4
Evalue7.13e-07
EggNOG OGsCOG1196@1|root,COG1196@2|Bacteria,1MUAQ@1224|Proteobacteria,2VJMF@28216|Betaproteobacteria,2KPDU@206351|Neisseriales
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-01_006570.1
DescriptionRequired for chromosome condensation and partitioning
Cds size786
COG categoryD
BRITEko00000,ko03036
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186144.9075093-UTR-P-wetherbeei_contig1840:698..11231683186144.9075093-UTR-P-wetherbeei_contig1840:698..1123Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1840 699..1123 +
1683186144.917639-UTR-P-wetherbeei_contig1840:1252..16391683186144.917639-UTR-P-wetherbeei_contig1840:1252..1639Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1840 1253..1639 +
1683186144.9263275-UTR-P-wetherbeei_contig1840:1776..18111683186144.9263275-UTR-P-wetherbeei_contig1840:1776..1811Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1840 1777..1811 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186144.935071-CDS-P-wetherbeei_contig1840:1811..25401683186144.935071-CDS-P-wetherbeei_contig1840:1811..2540Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1840 1812..2540 +
1683186144.9524157-CDS-P-wetherbeei_contig1840:2690..27471683186144.9524157-CDS-P-wetherbeei_contig1840:2690..2747Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1840 2691..2747 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1840.1.1prot_P-wetherbeei_contig1840.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1840 1812..2747 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1840.1.1

>prot_P-wetherbeei_contig1840.1.1 ID=prot_P-wetherbeei_contig1840.1.1|Name=mRNA_P-wetherbeei_contig1840.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=262bp
MLNTALMASSAAAEASSTPQLPAPPPLRLTEIYIHGFRSFRAPTTVPVRA
AGGLICIAGPNGSGKSTLIDAVLFGLGAAAADVGARQAADLATAPQAEVR
LTFRPAAAAAAAGGGNARGSGNIVAACGSSAAATATAAAAAADAPLVVSS
SVSKATGQRAYALGGRRLPKARFDALVASRIGLALDAPCWRIGQHSVARV
LAATPAVLHGALCEAAGTAALNRHRLKAIRKIACWRTALIGVQANVARLE
DAVRRDAALLNA
back to top

mRNA from alignment at P-wetherbeei_contig1840:699..2747+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1840.1.1 ID=mRNA_P-wetherbeei_contig1840.1.1|Name=mRNA_P-wetherbeei_contig1840.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2049bp|location=Sequence derived from alignment at P-wetherbeei_contig1840:699..2747+ (Phaeothamnion wetherbeei SAG_119_79)
GCCGCAAGGATGCTTTTCATGATGGAAAGTTGCTTCGACCTGGCCAACTT
GTGCGCAACGGATCGCTGACCACGCCCTTGACTTTGTAGCTCCGTCTCAA
CCGGTCGCAATCCGTGTCAGCGGAGAGCACAGGCGGTGGCGACAGCGCCG
GAACGGCTTTGTAGATGAGTGCAAGATGGCGGCAGCGCCGCCGCTAGTGG
CCGACGGGCACCAATCTGCCGCTGTACTCGGTACCATGTTGAGAATGGCC
TTCCACCACGTGAGCAGAAGGGACTTGGAAGGAAGAGAACTGGAAGATAC
CGGGACAACACGTTGGAACCCTAAAAATTCAGTTCAAATCTTTCCTTCAA
AAGCCTTGCTTCAGGTGTGTTGTCCTCTCATTCATATGCCAGCTATCAAT
CCAGCGACCGGTCGCGCTGTCTCAGGTGAGGCATTAGGGGCTTGGCTTCC
GGTGACACGCTCGATCCCGGCAACCCAGAAAAGCGCAAACAGGTAACTTT
TCATTGTGGTCCTTGCGCTCCCGTCGTGTTTGGGGAGATATGCCAAAAAA
ACAGGTGAAGCCTCACAAACGGAAGGCAGGGTTAGGGATTGCGATGCGCA
GCTAAGTTCCAACGTCTGTGCCAGGACTACACGGCCGGCTTCTTTCGGGT
TTTCTATTCCCACAAACAGAAAGCCGGGGCGCTTCCCGTCTTTGCCTGGA
CCATGACACTGGACGGAGCCCGGGCGGATCCGGCTAGGCTCTAGATCTGT
GACGGAGCCAGCCAAAGACTGCGCGAAAACAAAAGCAACGCGAATTGATC
AGCCCGTCTCTTAAAGCTTGAGCCAAGTGGGGCGAAAACCGCAGCAAAGT
CCTTTCCTTGCAGCGCGACGGGTTTCCTCCCCCATCTTCACATTCGTGGA
AGGAGGAAGAGGAGGCGAGAGATCCGCGGAGCCAATTGTTGGTAAGTTGA
CCAAGAGGCCTGCCCTCCGCCTCGGAAGAGTTTGCGATCCATTTCTGACA
ATAGCTCGCCGAATCCTCTGTGGATTTCCTTCTGCTTTCCTCCAATCATT
ATCGTCTTTCCGTCGCCTTTCCATTCAGGTGGCGTTCCCTTTGAACGTGA
TTGGAAAAGAACCATGTTAAACACTGCTCTCATGGCGTCTTCAGCTGCAG
CGGAAGCGTCCTCGACGCCTCAACTGCCGGCTCCGCCGCCGCTTCGCCTC
ACGGAGATCTACATCCACGGCTTCCGCAGCTTCCGAGCGCCCACCACCGT
CCCTGTTCGCGCCGCGGGAGGCCTGATCTGCATCGCCGGACCCAACGGCA
GCGGAAAATCGACTCTAATCGACGCCGTCCTCTTCGGGCTCGGCGCAGCC
GCCGCCGACGTCGGCGCACGCCAGGCCGCCGACCTCGCCACGGCACCGCA
GGCGGAGGTCCGCCTCACCTTCCGCCCCGCCGCCGCCGCCGCCGCCGCCG
GCGGCGGGAATGCTCGCGGCAGCGGCAACATTGTAGCTGCCTGCGGATCG
TCTGCGGCGGCGACCGCCACCGCCGCAGCAGCAGCAGCCGACGCTCCGCT
GGTGGTGTCCTCCTCCGTTTCCAAGGCGACGGGTCAGCGCGCCTACGCCC
TCGGCGGCAGGCGGCTGCCCAAAGCACGCTTCGACGCCCTCGTTGCCTCC
CGGATCGGCCTGGCGCTGGACGCGCCCTGCTGGCGCATCGGCCAGCACAG
CGTGGCGCGCGTGCTGGCGGCGACCCCCGCGGTGCTGCACGGCGCGCTCT
GCGAGGCGGCGGGCACGGCGGCGCTGAACCGCCACCGGCTGAAGGCGATC
AGAAAGATTGCCTGCTGGCGCACGGCACTCATCGGGGTCCAGGTCGGTTT
CGGTCGGTCCGGTTAGATCCGAAAGCGTTCGAATGACGGTTTGGAGATGT
GACTGGCCGTTGCCGGGCAGGGCGAATCGGTCTTCTCCTTTCCGTCACAT
CCCTTTCCCGATTTCCCGCAAACTGCGCCCCCCAAAAAGCAGGCCAACGT
GGCCCGCCTCGAAGACGCCGTCCGCCGCGACGCGGCGCTGCTCAATGCC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1840:699..2747+

>mRNA_P-wetherbeei_contig1840.1.1 ID=mRNA_P-wetherbeei_contig1840.1.1|Name=mRNA_P-wetherbeei_contig1840.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=786bp|location=Sequence derived from alignment at P-wetherbeei_contig1840:699..2747+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTTAAACACTGCTCTCATGGCGTCTTCAGCTGCAGCGGAAGCGTCCTC
GACGCCTCAACTGCCGGCTCCGCCGCCGCTTCGCCTCACGGAGATCTACA
TCCACGGCTTCCGCAGCTTCCGAGCGCCCACCACCGTCCCTGTTCGCGCC
GCGGGAGGCCTGATCTGCATCGCCGGACCCAACGGCAGCGGAAAATCGAC
TCTAATCGACGCCGTCCTCTTCGGGCTCGGCGCAGCCGCCGCCGACGTCG
GCGCACGCCAGGCCGCCGACCTCGCCACGGCACCGCAGGCGGAGGTCCGC
CTCACCTTCCGCCCCGCCGCCGCCGCCGCCGCCGCCGGCGGCGGGAATGC
TCGCGGCAGCGGCAACATTGTAGCTGCCTGCGGATCGTCTGCGGCGGCGA
CCGCCACCGCCGCAGCAGCAGCAGCCGACGCTCCGCTGGTGGTGTCCTCC
TCCGTTTCCAAGGCGACGGGTCAGCGCGCCTACGCCCTCGGCGGCAGGCG
GCTGCCCAAAGCACGCTTCGACGCCCTCGTTGCCTCCCGGATCGGCCTGG
CGCTGGACGCGCCCTGCTGGCGCATCGGCCAGCACAGCGTGGCGCGCGTG
CTGGCGGCGACCCCCGCGGTGCTGCACGGCGCGCTCTGCGAGGCGGCGGG
CACGGCGGCGCTGAACCGCCACCGGCTGAAGGCGATCAGAAAGATTGCCT
GCTGGCGCACGGCACTCATCGGGGTCCAGGCCAACGTGGCCCGCCTCGAA
GACGCCGTCCGCCGCGACGCGGCGCTGCTCAATGCC
back to top