mRNA_P-wetherbeei_contig18373.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18373.1.1
Unique NamemRNA_P-wetherbeei_contig18373.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig18373.1.1 vs. uniprot
Match: D7FTC4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTC4_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 8.090e-17
Identity = 43/69 (62.32%), Postives = 53/69 (76.81%), Query Frame = 1 
Query:    4 ASIVSRVRELAHANTYQMRQTYLHVCQRLAGCV----DRRVFVAEFAPSFAELAMDRVVNVRIAMARTL 198
            AS+VSRVRELAHA+TYQ RQ Y+++C  +A       +R +F+ EF PS AELAMD VVNVRIAM+RTL
Sbjct:  501 ASMVSRVRELAHAHTYQARQMYVYICHSMACSANVNHERPLFIQEFVPSLAELAMDSVVNVRIAMSRTL 569
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BLAST of mRNA_P-wetherbeei_contig18373.1.1 vs. uniprot
Match: A0A6H5JAD4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAD4_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 5.270e-16
Identity = 42/69 (60.87%), Postives = 52/69 (75.36%), Query Frame = 1 
Query:    4 ASIVSRVRELAHANTYQMRQTYLHVCQRLAGCV----DRRVFVAEFAPSFAELAMDRVVNVRIAMARTL 198
            AS+VSRVRELAHA+TYQ RQ Y+++C  +A       +R +F+ EF PS AELA D VVNVRIAM+RTL
Sbjct:  113 ASMVSRVRELAHAHTYQARQMYVYICHSMACSANVNHERPLFIQEFVPSLAELATDSVVNVRIAMSRTL 181
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BLAST of mRNA_P-wetherbeei_contig18373.1.1 vs. uniprot
Match: A0A836CCL0_9STRA (Armadillo-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCL0_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 1.240e-9
Identity = 30/47 (63.83%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:   58 RQTYLHVCQRLAGCVDRRVFVAEFAPSFAELAMDRVVNVRIAMARTL 198
            RQ Y+++CQRL   + R  FV+EF PS AELA DRVVNVRIA++RTL
Sbjct:  410 RQMYIYICQRLQAYLPRDDFVSEFMPSLAELATDRVVNVRIALSRTL 456
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18373.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FTC4_ECTSI8.090e-1762.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JAD4_9PHAE5.270e-1660.87Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A836CCL0_9STRA1.240e-963.83Armadillo-type protein n=1 Tax=Tribonema minus Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18373contigP-wetherbeei_contig18373:110..307 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FTC4
Preferred namePPP4R1
PFAMsHEAT,WRNPLPNID
Model size198
Max annot lvl2759|Eukaryota
KEGG koko:K15424,ko:K15426
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005575,GO:0005622,GO:0005623,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008287,GO:0009987,GO:0010921,GO:0016310,GO:0019208,GO:0019220,GO:0019222,GO:0019538,GO:0019888,GO:0023052,GO:0030234,GO:0030289,GO:0031323,GO:0031399,GO:0032268,GO:0032991,GO:0035303,GO:0035304,GO:0036211,GO:0043170,GO:0043412,GO:0043666,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051174,GO:0051246,GO:0051336,GO:0051716,GO:0060255,GO:0065007,GO:0065009,GO:0071704,GO:0080090,GO:0098772,GO:1901564,GO:1902494,GO:1903293
Exons1
Evalue1.33e-17
EggNOG OGsKOG0211@1|root,KOG0211@2759|Eukaryota
Descriptionmeiotic spindle elongation
Cds size198
COG categoryS
BRITEko00000,ko01009,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186144.0830286-CDS-P-wetherbeei_contig18373:109..3071683186144.0830286-CDS-P-wetherbeei_contig18373:109..307Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18373 110..307 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18373.1.1prot_P-wetherbeei_contig18373.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18373 110..307 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18373.1.1

>prot_P-wetherbeei_contig18373.1.1 ID=prot_P-wetherbeei_contig18373.1.1|Name=mRNA_P-wetherbeei_contig18373.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=66bp
HASIVSRVRELAHANTYQMRQTYLHVCQRLAGCVDRRVFVAEFAPSFAEL
AMDRVVNVRIAMARTL
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mRNA from alignment at P-wetherbeei_contig18373:110..307+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18373.1.1 ID=mRNA_P-wetherbeei_contig18373.1.1|Name=mRNA_P-wetherbeei_contig18373.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=198bp|location=Sequence derived from alignment at P-wetherbeei_contig18373:110..307+ (Phaeothamnion wetherbeei SAG_119_79)
CACGCCAGCATCGTCTCCCGCGTCCGCGAGCTGGCGCACGCCAACACGTA
CCAGATGCGCCAGACGTACCTCCACGTCTGCCAGCGGCTGGCCGGCTGCG
TTGACCGCCGCGTCTTCGTAGCCGAGTTCGCGCCGAGCTTCGCCGAGCTC
GCGATGGACCGCGTCGTCAACGTGCGCATCGCCATGGCGCGCACCCTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18373:110..307+

>mRNA_P-wetherbeei_contig18373.1.1 ID=mRNA_P-wetherbeei_contig18373.1.1|Name=mRNA_P-wetherbeei_contig18373.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=198bp|location=Sequence derived from alignment at P-wetherbeei_contig18373:110..307+ (Phaeothamnion wetherbeei SAG_119_79)
CACGCCAGCATCGTCTCCCGCGTCCGCGAGCTGGCGCACGCCAACACGTA
CCAGATGCGCCAGACGTACCTCCACGTCTGCCAGCGGCTGGCCGGCTGCG
TTGACCGCCGCGTCTTCGTAGCCGAGTTCGCGCCGAGCTTCGCCGAGCTC
GCGATGGACCGCGTCGTCAACGTGCGCATCGCCATGGCGCGCACCCTC
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