mRNA_P-wetherbeei_contig18340.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18340.1.1
Unique NamemRNA_P-wetherbeei_contig18340.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig18340.1.1 vs. uniprot
Match: A0A6I3WWD0_9ACTN (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A6I3WWD0_9ACTN)

HSP 1 Score: 133 bits (335), Expect = 2.350e-35
Identity = 76/158 (48.10%), Postives = 99/158 (62.66%), Query Frame = 1
Query:   82 KRPTDSDVPLLGFAESVELSAKSLYDVALRSLTDLDDLTRSVLVTIRENHLAYGNALSGLLGRLTTGAQDDDLVKQRTPDFGGSLEDALAAAANLESTLVATHLDLLGQLQGGDAAELIASFVVTEARHGTVLVSLGGSSDLEALLVSEEADALTPAE 555
            KRPT +D+ LL FA+++EL+A+ LYDVAL +    DD T   +  IRE H AY  +LSGL+GR   G + D L      DF G+       AA+LE+  VATHLD+L QL G DAA LIAS +V EARH TVL +  G+S L   L S+   AL+P++
Sbjct:   96 KRPTTADIALLAFAQTIELAARDLYDVALAAKV-FDDATAGDITAIREAHEAYAQSLSGLIGRNAPGVRSDKLFNASKGDFAGTAATVAGNAADLENIAVATHLDILDQLVGIDAAALIASILVVEARHATVLHTFAGASSLAQQLASQ-GTALSPSD 251          
BLAST of mRNA_P-wetherbeei_contig18340.1.1 vs. uniprot
Match: A0A539DJ97_9ACTN (Uncharacterized protein (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A539DJ97_9ACTN)

HSP 1 Score: 122 bits (305), Expect = 8.780e-32
Identity = 75/163 (46.01%), Postives = 98/163 (60.12%), Query Frame = 1
Query:   73 APAKRPTDSDVPLLGFAESVELSAKSLYDVALRSLTDLDDLTRSVLVTIRENHLAYGNALSGLLGRLTTGAQDDDLVKQRTPDFG-GSLEDALAAAANLESTLVATHLDLLGQLQGGDAAELIASFVVTEARHGTVLVSLGGSSDLEALLVSEEADALTPAEG 558
            AP +RPT  DV LL FA+SVEL+   LY VAL S   L D   ++L   R  H+AY  +LS +LG   TGA   ++++     F  G+  D   AA +LE+  VATH +LLG L G DAA L+AS ++ EARH  V   L G +DL+ALL++  ADAL P  G
Sbjct:   15 APPQRPTGDDVALLQFAQSVELAVVELYGVALGS-NGLGDGLLALLTETRATHVAYAQSLSAMLGTDATGATATEVIEAGRAAFATGNDHDVATAAHDLEAVAVATHTELLGLLLGTDAASLVASILIVEARHSLVFGKLAGINDLDALLLTN-ADALAPGRG 175          
BLAST of mRNA_P-wetherbeei_contig18340.1.1 vs. uniprot
Match: A0A6I3F963_9ACTN (Uncharacterized protein n=3 Tax=root TaxID=1 RepID=A0A6I3F963_9ACTN)

HSP 1 Score: 119 bits (297), Expect = 5.110e-30
Identity = 70/154 (45.45%), Postives = 95/154 (61.69%), Query Frame = 1
Query:   82 KRPTDSDVPLLGFAESVELSAKSLYDVALRSLTDLDDLTRSVLVTIRENHLAYGNALSGLLGRLTTGAQDDDLVKQRTPDFGGSLEDALAAAANLESTLVATHLDLLGQLQGGDAAELIASFVVTEARHGTVLVSLGGSSDLEALLVSEEADAL 543
            KRPTD+DV LL FA+ +EL+A++LYD AL +    D L   V+ TIRE H AY  +LSGLLGR  +G   + L++Q +  + G+ +  LAAA + ES  VAT+ ++LG+LQG DAA+LIAS  + EAR                LLV  EA +L
Sbjct:   69 KRPTDADVALLDFAQQLELTARALYDKALAAKWPADQLV--VVTTIREAHEAYAQSLSGLLGRKASGTASEALLRQFSTAWAGTPDKLLAAAYDFESAAVATYAEILGKLQGTDAAQLIASIQIAEARXXXXXXXXXXXXXXXXLLVDTEAASL 220          
BLAST of mRNA_P-wetherbeei_contig18340.1.1 vs. uniprot
Match: A0A7K1C813_9ACTN (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A7K1C813_9ACTN)

HSP 1 Score: 110 bits (275), Expect = 4.970e-27
Identity = 61/161 (37.89%), Postives = 92/161 (57.14%), Query Frame = 1
Query:   76 PAKRPTDSDVPLLGFAESVELSAKSLYDVALRSLTDLDDLTRSVLVTIRENHLAYGNALSGLLGRLTTGAQDDDLVKQRTPDFGGSLEDALAAAANLESTLVATHLDLLGQLQGGDAAELIASFVVTEARHGTVLVSLGGSS---DLEALLVSEEADALTP 549
            P +RPT +D+ LL FA++ EL+A+ LY+ A+      D +    LV +  +H AY  +LS LLG     +++D+L       FG   E    AA  LE+TLV TH DLLG+L G + A L+AS ++ E+RH   L +L G S   D++  L + + ++L P
Sbjct:   37 PPRRPTPADIELLAFAQAAELTARDLYEQAVAEGAGGDQIAS--LVALAAHHDAYAQSLSALLGTDAPQSRNDELFSSLKSGFGSDTESTALAAHELENTLVVTHTDLLGRLDGTEGAALVASILIGESRHCAALAALAGKSPVDDIDLFLTTSDVESLAP 195          
BLAST of mRNA_P-wetherbeei_contig18340.1.1 vs. uniprot
Match: A0A7W0KUR1_9ACTN (Ferritin-like domain-containing protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W0KUR1_9ACTN)

HSP 1 Score: 110 bits (274), Expect = 8.170e-27
Identity = 70/164 (42.68%), Postives = 99/164 (60.37%), Query Frame = 1
Query:   76 PAKRPTDSDVPLLGFAESVELSAKSLYDVALRSLTDLDDLTRSVLVTIRENHLAYGNALSGLLGRLTTGAQDDDLVKQRTPDFGGSLEDALAAAA-NLESTLVATHLDLLGQLQGGDAAELIASFVVTEARHGTVLVSLGG-SSDLEALLVSE-EADALTPAEG 558
            P  +PT  D  LL  A   EL+++ LY +A+ +     D T   L   R++H AY + LSGL+GR  T ++D++L +  +  F       +AAAA ++ESTLVATH  LLGQL+G + A+ IAS ++ EARH  VL  + G   DL+AL V++ E  ALTP EG
Sbjct:   43 PEAQPTAEDAGLLAAAREAELASRDLYQLAIDAGAGGGDGTMEAL---RDDHAAYADVLSGLIGRDATQSRDEELFESLSAGFDSDDTAGVAAAAYDMESTLVATHSALLGQLKGRNGAKTIASILMVEARHCVVLADVAGLGDDLDALFVNDAEPRALTPVEG 203          
BLAST of mRNA_P-wetherbeei_contig18340.1.1 vs. uniprot
Match: A0A7W1HHF3_9ACTN (Ferritin-like domain-containing protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W1HHF3_9ACTN)

HSP 1 Score: 106 bits (264), Expect = 2.790e-25
Identity = 71/158 (44.94%), Postives = 95/158 (60.13%), Query Frame = 1
Query:   85 RPTDSDVPLLGFAESVELSAKSLYDVALR--SLTDLDDLTRSVLVTIRENHLAYGNALSGLLGRLTTGAQDDDLVKQRTPDFGGSLEDALAAAAN-LESTLVATHLDLLGQLQGGDAAELIASFVVTEARHGTVLVSLGGSSDLEALLVSEEADALTP 549
            RPT+ D+PLL FAE +EL+A+ LY VAL   +  D D     VL+T R+NH A  ++LS +LG   TG +D+ L ++ +  F  S   A+A A   LEST VATH+ L+GQLQG   A  IA+ ++ E+R  TVL  L G  D +A L    A AL P
Sbjct:   49 RPTEGDIPLLAFAEQIELTARDLYRVALDEGAAGDRD----RVLLTGRDNHQAAADSLSAILGIDGTGERDEALFEELSGGFTTSDLPAVAEAGYALESTAVATHIGLIGQLQGTAGANTIAAILMIESRMCTVLADLQGLGDDDAALFDNGAVALVP 202          
BLAST of mRNA_P-wetherbeei_contig18340.1.1 vs. uniprot
Match: A0A6I3HW40_9ACTN (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A6I3HW40_9ACTN)

HSP 1 Score: 104 bits (260), Expect = 5.880e-25
Identity = 61/153 (39.87%), Postives = 88/153 (57.52%), Query Frame = 1
Query:   76 PAKRPTDSDVPLLGFAESVELSAKSLYDVALRSLTDLDDLTRSVLVTIRENHLAYGNALSGLLGRLTTGAQDDDLVKQRTPDFGGSLEDALAAAANLESTLVATHLDLLGQLQGGDAAELIASFVVTEARHGTVLVSLGGSS---DLEALLVS 525
            P +RPT +DV LL  A+S EL+A+ LY+ A+ +    D L    LV +  +H AY  ++S L+G      +DD+L      DFG     A  AA  LE+++VA H  L+G+L G D A L+AS V+TEARH   L ++ G S   D++  LV+
Sbjct:   21 PVRRPTAADVELLSAAQSTELAARDLYNSAIAAGAGGDHLAS--LVALSAHHDAYAQSISSLIGADAPQTRDDELFNSLVADFGSDTVGAALAAHGLENSIVAAHTTLVGELVGTDGAALMASIVITEARHCVALATIAGKSPVADIDLFLVT 171          
BLAST of mRNA_P-wetherbeei_contig18340.1.1 vs. uniprot
Match: A0A7V9IIJ5_9ACTN (Ferritin-like domain-containing protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7V9IIJ5_9ACTN)

HSP 1 Score: 94.0 bits (232), Expect = 1.130e-20
Identity = 61/148 (41.22%), Postives = 88/148 (59.46%), Query Frame = 1
Query:   88 PTDSDVPLLGFAESVELSAKSLYDVALR--SLTDLDDLTRSVLVTIRENHLAYGNALSGLLGRLTTGAQDDDLVKQRTPDFGGSLEDALAAAA-NLESTLVATHLDLLGQLQGGDAAELIASFVVTEARHGTVLVSLGGS-SDLEALL 519
            PT +D   L F    EL+A+ LY  A    + T + DL    +V + +NH AY ++L+ ++G     A D  +  +R  DF  +   ALA AA  LES LV TH+ L+G+L+  DAAEL+AS +++EARH  +L  L G+ +DLEALL
Sbjct:   28 PTGADAESLQFMLGAELAARDLYRAAHAEGAATPVPDL----IVALADNHGAYADSLAAIIGESANEAADAAVFDERLADFETTDVPALADAAYQLESQLVVTHVQLVGELRNRDAAELLASILISEARHCAILADLSGNGNDLEALL 171          
BLAST of mRNA_P-wetherbeei_contig18340.1.1 vs. uniprot
Match: A0A0R2Q1J6_9ACTN (Uncharacterized protein n=2 Tax=unclassified Acidimicrobium TaxID=2646899 RepID=A0A0R2Q1J6_9ACTN)

HSP 1 Score: 93.2 bits (230), Expect = 1.720e-20
Identity = 59/159 (37.11%), Postives = 90/159 (56.60%), Query Frame = 1
Query:   76 PAKRPTDSDVPLLGFAESVELSAKSLYDVALRSLTDLDDLTRSVLVTIRENHLAYGNALSGLLGRLTTGAQDDDLVKQRTPDFGGSLEDALAAAANLESTLVATHLDLLGQLQGGDAAELIASFVVTEARHGTVLVSLGGSSDLEALLVSEEADALTPA 552
            P  +PT++D  LL FA+ VE++A  LY  A  S     D   +++    E+H  Y  A++GL+G+  T  +++ L        G S + A  A  N+E+TL AT+ D+LGQLQG DAA ++AS +  EAR   V  +L G + L AL   + A++L P+
Sbjct:   13 PPAQPTEADKQLLQFAQGVEIAAHDLYKKAADSGKFAGD-ELAMISMFGEHHNMYAQAINGLIGKAATNQRNESLYSTHVGQLG-SAQTAYNALRNVENTLAATNTDILGQLQGIDAARVLASIITVEARQAAVFGTLPGLNLLVAL--DKSANSLAPS 167          
BLAST of mRNA_P-wetherbeei_contig18340.1.1 vs. uniprot
Match: A0A094QBZ5_9ZZZZ (Unannotated protein n=2 Tax=root TaxID=1 RepID=A0A094QBZ5_9ZZZZ)

HSP 1 Score: 90.1 bits (222), Expect = 2.520e-19
Identity = 56/160 (35.00%), Postives = 85/160 (53.12%), Query Frame = 1
Query:   73 APAKRPTDSDVPLLGFAESVELSAKSLYDVALRSLTDLDDLTRSVLVTIRENHLAYGNALSGLLGRLTTGAQDDDLVKQRTPDFGGSLEDALAAAANLESTLVATHLDLLGQLQGGDAAELIASFVVTEARHGTVLVSLGGSSDLEALLVSEEADALTPA 552
            AP K+PT +D  LL FA+  EL+   LY   + S     D   ++L    E+H AY  A++GLLG+  T  +++ + +        +++   A    LE+TL  TH+D+LG L+G D A+L+AS +  EARH  V  +L   S   AL     A ++ PA
Sbjct:   12 APPKQPTSNDKQLLAFAQEAELAVHDLYATVVSSSKFTGD-EAAMLSMFTEHHKAYAQAINGLLGKEATNRRNESIYQTYVGQLT-TMQSIYATLQALENTLAKTHIDILGNLEGIDGAQLVASIITAEARHAAVFGTLPTLSLSSAL--DNPAASIAPA 167          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18340.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6I3WWD0_9ACTN2.350e-3548.10Uncharacterized protein n=2 Tax=root TaxID=1 RepID... [more]
A0A539DJ97_9ACTN8.780e-3246.01Uncharacterized protein (Fragment) n=1 Tax=Acidimi... [more]
A0A6I3F963_9ACTN5.110e-3045.45Uncharacterized protein n=3 Tax=root TaxID=1 RepID... [more]
A0A7K1C813_9ACTN4.970e-2737.89Uncharacterized protein n=2 Tax=root TaxID=1 RepID... [more]
A0A7W0KUR1_9ACTN8.170e-2742.68Ferritin-like domain-containing protein n=1 Tax=Ac... [more]
A0A7W1HHF3_9ACTN2.790e-2544.94Ferritin-like domain-containing protein n=1 Tax=Ac... [more]
A0A6I3HW40_9ACTN5.880e-2539.87Uncharacterized protein n=2 Tax=root TaxID=1 RepID... [more]
A0A7V9IIJ5_9ACTN1.130e-2041.22Ferritin-like domain-containing protein n=1 Tax=Ac... [more]
A0A0R2Q1J6_9ACTN1.720e-2037.11Uncharacterized protein n=2 Tax=unclassified Acidi... [more]
A0A094QBZ5_9ZZZZ2.520e-1935.00Unannotated protein n=2 Tax=root TaxID=1 RepID=A0A... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18340contigP-wetherbeei_contig18340:792..1352 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size561
Hectar predicted targeting categoryother localisation
Exons1
Cds size561
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186143.355985-CDS-P-wetherbeei_contig18340:791..13521683186143.355985-CDS-P-wetherbeei_contig18340:791..1352Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18340 792..1352 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18340.1.1prot_P-wetherbeei_contig18340.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18340 792..1352 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18340.1.1

>prot_P-wetherbeei_contig18340.1.1 ID=prot_P-wetherbeei_contig18340.1.1|Name=mRNA_P-wetherbeei_contig18340.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=187bp
RAAASTPPDSGAPTTTAPPATTTTAPAKRPTDSDVPLLGFAESVELSAKS
LYDVALRSLTDLDDLTRSVLVTIRENHLAYGNALSGLLGRLTTGAQDDDL
VKQRTPDFGGSLEDALAAAANLESTLVATHLDLLGQLQGGDAAELIASFV
VTEARHGTVLVSLGGSSDLEALLVSEEADALTPAEG*
back to top

mRNA from alignment at P-wetherbeei_contig18340:792..1352-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18340.1.1 ID=mRNA_P-wetherbeei_contig18340.1.1|Name=mRNA_P-wetherbeei_contig18340.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=561bp|location=Sequence derived from alignment at P-wetherbeei_contig18340:792..1352- (Phaeothamnion wetherbeei SAG_119_79)
CGGGCTGCGGCCAGCACACCACCGGACTCAGGCGCGCCCACGACAACGGC GCCACCGGCCACCACGACCACCGCGCCGGCCAAGCGTCCGACCGACTCCG ACGTGCCGCTGCTCGGCTTCGCCGAGAGCGTCGAGCTGTCGGCGAAGTCG TTGTACGACGTGGCGTTGCGGTCGCTCACCGATCTCGACGACCTCACCCG CAGCGTGCTCGTCACGATCCGCGAGAACCACCTCGCCTACGGCAACGCGC TGTCCGGTCTGCTCGGACGGCTCACCACCGGGGCGCAGGACGACGATCTC GTCAAGCAGCGCACACCGGACTTCGGTGGATCGTTGGAGGACGCACTCGC TGCTGCCGCCAACCTGGAGAGCACGTTGGTCGCCACGCACCTCGACCTCC TTGGCCAGTTGCAGGGCGGCGACGCCGCCGAGCTCATCGCCTCGTTCGTC GTCACCGAGGCCCGTCACGGCACGGTGCTGGTATCGCTGGGCGGTTCCTC CGATCTCGAAGCACTCCTCGTGTCCGAGGAAGCCGACGCGTTGACGCCGG CGGAAGGGTGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig18340:792..1352-

>mRNA_P-wetherbeei_contig18340.1.1 ID=mRNA_P-wetherbeei_contig18340.1.1|Name=mRNA_P-wetherbeei_contig18340.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=561bp|location=Sequence derived from alignment at P-wetherbeei_contig18340:792..1352- (Phaeothamnion wetherbeei SAG_119_79)
CGGGCTGCGGCCAGCACACCACCGGACTCAGGCGCGCCCACGACAACGGC
GCCACCGGCCACCACGACCACCGCGCCGGCCAAGCGTCCGACCGACTCCG
ACGTGCCGCTGCTCGGCTTCGCCGAGAGCGTCGAGCTGTCGGCGAAGTCG
TTGTACGACGTGGCGTTGCGGTCGCTCACCGATCTCGACGACCTCACCCG
CAGCGTGCTCGTCACGATCCGCGAGAACCACCTCGCCTACGGCAACGCGC
TGTCCGGTCTGCTCGGACGGCTCACCACCGGGGCGCAGGACGACGATCTC
GTCAAGCAGCGCACACCGGACTTCGGTGGATCGTTGGAGGACGCACTCGC
TGCTGCCGCCAACCTGGAGAGCACGTTGGTCGCCACGCACCTCGACCTCC
TTGGCCAGTTGCAGGGCGGCGACGCCGCCGAGCTCATCGCCTCGTTCGTC
GTCACCGAGGCCCGTCACGGCACGGTGCTGGTATCGCTGGGCGGTTCCTC
CGATCTCGAAGCACTCCTCGTGTCCGAGGAAGCCGACGCGTTGACGCCGG
CGGAAGGGTGA
back to top