mRNA_P-wetherbeei_contig18339.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18339.1.1
Unique NamemRNA_P-wetherbeei_contig18339.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig18339.1.1 vs. uniprot
Match: A0A5R8QK29_9HYPH (CRISPR-associated endonuclease Cas1 n=2 Tax=Methylocystis sp. B8 TaxID=544938 RepID=A0A5R8QK29_9HYPH)

HSP 1 Score: 100 bits (248), Expect = 3.740e-23
Identity = 44/87 (50.57%), Postives = 59/87 (67.82%), Query Frame = 1
Query:   37 DDLEWAERCQYWASPTVVKKGRGAPPRRTHKPLILTGHGLGLRVEQGTLLVKDGFTHYPQVQAVHRFFPGDRNMPSRIFMINGNSKI 297
            DDL+WAERC  WA        R A   R  +PLIL+GHG+ LRVE GTL +++GFTHYPQ Q V RFF G+ ++P RI +++G+  +
Sbjct:   33 DDLDWAERCNLWAKRAQKTGSRRAARERPRQPLILSGHGVTLRVENGTLTIRNGFTHYPQKQEVIRFFKGELSIPERIIVLDGSGTV 119          
BLAST of mRNA_P-wetherbeei_contig18339.1.1 vs. uniprot
Match: UPI001575A914 (CRISPR-associated endonuclease Cas1 n=1 Tax=Sphingomonas bacterium TaxID=1895847 RepID=UPI001575A914)

HSP 1 Score: 96.3 bits (238), Expect = 2.530e-22
Identity = 39/88 (44.32%), Postives = 58/88 (65.91%), Query Frame = 1
Query:   34 GDDLEWAERCQYWASPTVVKKGRGAPPRRTHKPLILTGHGLGLRVEQGTLLVKDGFTHYPQVQAVHRFFPGDRNMPSRIFMINGNSKI 297
            GDD+EWAER  +W      ++      +R   PLIL GHG+ LR+E G L+++DGFTHYPQ Q  +R++PGD   P+RI +++G+  +
Sbjct:   10 GDDIEWAERSAHWIEEAANQRRPRRLRQRNPTPLILCGHGVSLRIEHGALIIRDGFTHYPQQQTKYRYYPGDLETPTRILLLDGSGTL 97          
BLAST of mRNA_P-wetherbeei_contig18339.1.1 vs. uniprot
Match: A0A4Q0GKC6_9SPHN (CRISPR-associated endonuclease Cas1 n=1 Tax=Sphingomonas sp. UV9 TaxID=1851410 RepID=A0A4Q0GKC6_9SPHN)

HSP 1 Score: 95.9 bits (237), Expect = 1.810e-21
Identity = 38/86 (44.19%), Postives = 59/86 (68.60%), Query Frame = 1
Query:   40 DLEWAERCQYWASPTVVKKGRGAPPRRTHKPLILTGHGLGLRVEQGTLLVKDGFTHYPQVQAVHRFFPGDRNMPSRIFMINGNSKI 297
            D +WAER ++W    V  K +    +R   PL+L GHG+ +R+E G+L+++DGFTHYPQ Q+ +RFFP D  +PSRI +++G+  +
Sbjct:   13 DADWAERSEFWLQSIVADKPKRRLRQRNPAPLVLCGHGVSMRIENGSLVIRDGFTHYPQKQSKYRFFPHDLELPSRILLLDGSGTL 98          
BLAST of mRNA_P-wetherbeei_contig18339.1.1 vs. uniprot
Match: A0A258G5K2_9SPHN (Uncharacterized protein n=1 Tax=Sphingomonas sp. 32-62-10 TaxID=1970436 RepID=A0A258G5K2_9SPHN)

HSP 1 Score: 94.4 bits (233), Expect = 4.520e-21
Identity = 40/84 (47.62%), Postives = 57/84 (67.86%), Query Frame = 1
Query:   46 EWAERCQYWASPTVVKKGRGAPPRRTHKPLILTGHGLGLRVEQGTLLVKDGFTHYPQVQAVHRFFPGDRNMPSRIFMINGNSKI 297
            +WAER ++W   + V   +     R   PLI+ G+G+ LRVE GTL+++DGFTHYPQ+Q VHR F GDR  P+RI +I+G+  +
Sbjct:   15 DWAERSEFWRGTSGVTSPKRKARERPDAPLIICGNGMSLRVEAGTLVIRDGFTHYPQLQTVHRLFAGDRGNPTRIVVIDGSGTL 98          
BLAST of mRNA_P-wetherbeei_contig18339.1.1 vs. uniprot
Match: A0A5M6ZNQ3_9PROT (CRISPR-associated endonuclease Cas1 n=1 Tax=Alkalicaulis satelles TaxID=2609175 RepID=A0A5M6ZNQ3_9PROT)

HSP 1 Score: 93.2 bits (230), Expect = 1.810e-20
Identity = 42/91 (46.15%), Postives = 58/91 (63.74%), Query Frame = 1
Query:   25 RAQGDDLEWAERCQYWASPTVVKKGRGAPPRRTHKPLILTGHGLGLRVEQGTLLVKDGFTHYPQVQAVHRFFPGDRNMPSRIFMINGNSKI 297
            RA GD  EW ERCQYW +             R   PLILTGHGL +RV++G L+++DG TH+PQ +  HRFF G  ++P RI +++G+ +I
Sbjct:   11 RADGD--EWLERCQYWQAAHDAAMPTRKRRERQSAPLILTGHGLSIRVDRGALMIRDGLTHFPQERRAHRFFKGGLDIPPRIVIVDGSGEI 99          
BLAST of mRNA_P-wetherbeei_contig18339.1.1 vs. uniprot
Match: A0A6N0WXJ3_9SPHN (CRISPR-associated endonuclease Cas1 n=1 Tax=Sphingomonas sp. CL5.1 TaxID=2653203 RepID=A0A6N0WXJ3_9SPHN)

HSP 1 Score: 91.7 bits (226), Expect = 7.580e-20
Identity = 40/96 (41.67%), Postives = 59/96 (61.46%), Query Frame = 1
Query:   16 WSDRAQGDDL--EWAERCQYWASPTVVKKGRGAPPRRTHKPLILTGHGLGLRVEQGTLLVKDGFTHYPQVQAVHRFFPGDRNMPSRIFMINGNSKI 297
            W       D+  +WA R ++W S       R    +R   PLIL GHG+ LR+E G L+++DGFTHYPQ QA +RFFPG  ++P+RI +++G+  +
Sbjct:    3 WKPEIDPSDIADDWAVRSEFWLSRATKSAPRRKLRQRNPAPLILNGHGVSLRIENGALVIRDGFTHYPQEQARYRFFPGSLDIPTRILLLDGSGTL 98          
BLAST of mRNA_P-wetherbeei_contig18339.1.1 vs. uniprot
Match: A0A1H5J1M7_9HYPH (CRISPR-associated endonuclease Cas1 n=1 Tax=Rhizobiales bacterium GAS191 TaxID=1882830 RepID=A0A1H5J1M7_9HYPH)

HSP 1 Score: 90.9 bits (224), Expect = 1.510e-19
Identity = 42/92 (45.65%), Postives = 59/92 (64.13%), Query Frame = 1
Query:   25 RAQGDDLEWAERCQYWASPTVVKKGRGAPPR-RTHKPLILTGHGLGLRVEQGTLLVKDGFTHYPQVQAVHRFFPGDRNMPSRIFMINGNSKI 297
            +A+ DD  W ERC +WAS       R  P R R    L L GHG+ LR++ G LL+++GFTHYPQ++  +RFF GD ++PSRI +++G   I
Sbjct:    3 QAEVDDTAWRERCSHWASRRQSSNRR--PIRQRERTALFLVGHGVSLRIDTGALLIRNGFTHYPQIRETYRFFRGDLSLPSRIILLDGTGTI 92          
BLAST of mRNA_P-wetherbeei_contig18339.1.1 vs. uniprot
Match: UPI00131C226B (CRISPR-associated endonuclease Cas1 n=1 Tax=Acidisoma sp. S159 TaxID=1747225 RepID=UPI00131C226B)

HSP 1 Score: 90.9 bits (224), Expect = 1.570e-19
Identity = 37/83 (44.58%), Postives = 55/83 (66.27%), Query Frame = 1
Query:   49 WAERCQYWASPTVVKKGRGAPPRRTHKPLILTGHGLGLRVEQGTLLVKDGFTHYPQVQAVHRFFPGDRNMPSRIFMINGNSKI 297
            WAER +YW S       R     R  +PLIL GHG+ LR++ G L+V++GFTH+PQ   +HRFF GD N+P+R+ +++G+  +
Sbjct:   16 WAERSEYWISEISKSSRRRKLRERQSEPLILCGHGISLRIQNGALIVREGFTHHPQETTLHRFFRGDLNLPTRLILLDGSGTL 98          
BLAST of mRNA_P-wetherbeei_contig18339.1.1 vs. uniprot
Match: A0A4Q3Y565_9PROT (CRISPR-associated endonuclease Cas1 n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A4Q3Y565_9PROT)

HSP 1 Score: 90.5 bits (223), Expect = 1.830e-19
Identity = 39/89 (43.82%), Postives = 58/89 (65.17%), Query Frame = 1
Query:   31 QGDDLEWAERCQYWASPTVVKKGRGAPPRRTHKPLILTGHGLGLRVEQGTLLVKDGFTHYPQVQAVHRFFPGDRNMPSRIFMINGNSKI 297
            + DD +WA R ++W +  V    R A   R  +PLIL G G+ L+V++GTLL++DGFTH+PQ +  HRFF G   +P RI M++G+  +
Sbjct:    7 EDDDTDWAARNEHWRTHKVRGGRRSAKRERRREPLILCGRGVSLQVDKGTLLIRDGFTHWPQERTEHRFFKGSLELPPRIVMLDGSGSL 95          
BLAST of mRNA_P-wetherbeei_contig18339.1.1 vs. uniprot
Match: A0A844XCC0_9SPHN (CRISPR-associated endonuclease Cas1 n=1 Tax=Aurantiacibacter rhizosphaerae TaxID=2691582 RepID=A0A844XCC0_9SPHN)

HSP 1 Score: 89.4 bits (220), Expect = 4.850e-19
Identity = 40/91 (43.96%), Postives = 56/91 (61.54%), Query Frame = 1
Query:   25 RAQGDDLEWAERCQYWASPTVVKKGRGAPPRRTHKPLILTGHGLGLRVEQGTLLVKDGFTHYPQVQAVHRFFPGDRNMPSRIFMINGNSKI 297
            RA  +  EWAER ++W       K +     RT +PLILTGHG  LR+EQG+LL++ GF+HYPQ     R+F GD  +P  I +++G+  I
Sbjct:    8 RAIENHSEWAERSEFWVRNIAKSKRKRRRRERTSQPLILTGHGSSLRIEQGSLLIRQGFSHYPQKAEQFRYFKGDLQLPRLILLLDGSGSI 98          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18339.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5R8QK29_9HYPH3.740e-2350.57CRISPR-associated endonuclease Cas1 n=2 Tax=Methyl... [more]
UPI001575A9142.530e-2244.32CRISPR-associated endonuclease Cas1 n=1 Tax=Sphing... [more]
A0A4Q0GKC6_9SPHN1.810e-2144.19CRISPR-associated endonuclease Cas1 n=1 Tax=Sphing... [more]
A0A258G5K2_9SPHN4.520e-2147.62Uncharacterized protein n=1 Tax=Sphingomonas sp. 3... [more]
A0A5M6ZNQ3_9PROT1.810e-2046.15CRISPR-associated endonuclease Cas1 n=1 Tax=Alkali... [more]
A0A6N0WXJ3_9SPHN7.580e-2041.67CRISPR-associated endonuclease Cas1 n=1 Tax=Sphing... [more]
A0A1H5J1M7_9HYPH1.510e-1945.65CRISPR-associated endonuclease Cas1 n=1 Tax=Rhizob... [more]
UPI00131C226B1.570e-1944.58CRISPR-associated endonuclease Cas1 n=1 Tax=Acidis... [more]
A0A4Q3Y565_9PROT1.830e-1943.82CRISPR-associated endonuclease Cas1 n=1 Tax=Alphap... [more]
A0A844XCC0_9SPHN4.850e-1943.96CRISPR-associated endonuclease Cas1 n=1 Tax=Aurant... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18339contigP-wetherbeei_contig18339:2..298 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1280948.HY36_17590
Preferred namecas1
PFAMsCas_Cas1
Model size297
Max annot lvl2|Bacteria
KEGG koko:K15342
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.11e-16
EggNOG OGsCOG1518@1|root,COG1518@2|Bacteria
Descriptionmaintenance of DNA repeat elements
Cds size297
COG categoryL
BRITEko00000,ko02048,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186143.3007605-CDS-P-wetherbeei_contig18339:1..2981683186143.3007605-CDS-P-wetherbeei_contig18339:1..298Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18339 2..298 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18339.1.1prot_P-wetherbeei_contig18339.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18339 2..298 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18339.1.1

>prot_P-wetherbeei_contig18339.1.1 ID=prot_P-wetherbeei_contig18339.1.1|Name=mRNA_P-wetherbeei_contig18339.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=99bp
MVAASWSDRAQGDDLEWAERCQYWASPTVVKKGRGAPPRRTHKPLILTGH
GLGLRVEQGTLLVKDGFTHYPQVQAVHRFFPGDRNMPSRIFMINGNSKI
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mRNA from alignment at P-wetherbeei_contig18339:2..298-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18339.1.1 ID=mRNA_P-wetherbeei_contig18339.1.1|Name=mRNA_P-wetherbeei_contig18339.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=297bp|location=Sequence derived from alignment at P-wetherbeei_contig18339:2..298- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGGCGGCAAGCTGGTCGGACCGGGCTCAAGGGGATGATCTTGAATG GGCCGAACGATGCCAATATTGGGCTTCGCCAACGGTCGTCAAAAAGGGGC GCGGCGCACCCCCGAGGCGGACGCACAAGCCATTAATTCTAACTGGCCAT GGGCTCGGGCTCCGGGTTGAGCAGGGCACGTTACTGGTCAAAGACGGCTT TACCCACTACCCGCAGGTCCAGGCAGTTCATCGGTTCTTTCCCGGTGATC GCAATATGCCCTCCCGGATCTTCATGATCAACGGAAACAGCAAAATC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18339:2..298-

>mRNA_P-wetherbeei_contig18339.1.1 ID=mRNA_P-wetherbeei_contig18339.1.1|Name=mRNA_P-wetherbeei_contig18339.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=297bp|location=Sequence derived from alignment at P-wetherbeei_contig18339:2..298- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGGCGGCAAGCTGGTCGGACCGGGCTCAAGGGGATGATCTTGAATG
GGCCGAACGATGCCAATATTGGGCTTCGCCAACGGTCGTCAAAAAGGGGC
GCGGCGCACCCCCGAGGCGGACGCACAAGCCATTAATTCTAACTGGCCAT
GGGCTCGGGCTCCGGGTTGAGCAGGGCACGTTACTGGTCAAAGACGGCTT
TACCCACTACCCGCAGGTCCAGGCAGTTCATCGGTTCTTTCCCGGTGATC
GCAATATGCCCTCCCGGATCTTCATGATCAACGGAAACAGCAAAATC
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