mRNA_P-wetherbeei_contig18311.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig18311.1.1 vs. uniprot
Match: D7FS62_ECTSI (tRNA pseudouridine synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS62_ECTSI) HSP 1 Score: 177 bits (450), Expect = 5.110e-51 Identity = 90/181 (49.72%), Postives = 124/181 (68.51%), Query Frame = 1
Query: 1 MSGKNQRLLARVSYDGMAYRGFQLQPGNAKTVQGELEAVLSKRFGKGIYVVGASRTDTGVHARGQAVHFDLPSKAAGDMGRLEYACNQMLPEDIRMWNLTVAPAPSPERLAMGLPFHANVDASSKLYSYRIFIGPVVCPLDQLFRAHVP----GPIDLGLLDDALQQFRGTHNFAAFANQL 531
+ GK R ++RV YDG Y+GFQLQ TVQG LE LS RF + VV A RTDTGVH+ GQAVHFDLP+ A D+ +L Y+ NQM+PED+R+WN++VAP SP ++ G P+ + ++A K YSYR+F+GPV+ PLD+L+RAH PI++ LL + + G H+FA F+N++
Sbjct: 132 LEGKKTRFVSRVMYDGTNYKGFQLQGHGLPTVQGVLEKALSTRFQTYVPVVAAGRTDTGVHSVGQAVHFDLPN-ANEDLSQLAYSMNQMMPEDVRVWNMSVAPPSSPWQVEKGWPWSSMLNARGKRYSYRLFVGPVMSPLDRLYRAHASQAAGSPINVDLLYQTIPKLVGKHDFAGFSNEV 311
BLAST of mRNA_P-wetherbeei_contig18311.1.1 vs. uniprot
Match: A0A836CB05_9STRA (tRNA pseudouridine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB05_9STRA) HSP 1 Score: 168 bits (426), Expect = 6.780e-48 Identity = 88/162 (54.32%), Postives = 110/162 (67.90%), Query Frame = 1
Query: 28 ARVSYDGMAYRGFQLQPGNAKTVQGELEAVLSKRFGKGIYVVGASRTDTGVHARGQAVHFDLPSKAAGD-------MGRLEYACNQMLPEDIRMWNLTVAPAPSPERLAMGLPFHANVDASSKLYSYRIFIGPVVCPLDQLFRAHVPG---PIDLGLLDDAL 483
A+V YDG+ +RGFQLQPGN +TVQGELE L KRF + I V+GASRTD GVH+RGQ VHFDLP+ A M L+Y NQMLPED+R++ L P PSP++ GLP+ ANV+A +KLY+YR+ V PLD RAH P P+DLG+L+ L
Sbjct: 82 AKVMYDGVGFRGFQLQPGNYRTVQGELEKALQKRFQRRISVLGASRTDAGVHSRGQVVHFDLPASGASALAYDPAAMALLQYCLNQMLPEDVRVYGLAPVPLPSPQQRQQGLPWSANVNARAKLYTYRLSFCDVTNPLDARQRAHYPPVLWPVDLGVLEATL 243
BLAST of mRNA_P-wetherbeei_contig18311.1.1 vs. uniprot
Match: A0A1Z5KP68_FISSO (tRNA pseudouridine synthase n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KP68_FISSO) HSP 1 Score: 155 bits (391), Expect = 3.170e-43 Identity = 82/179 (45.81%), Postives = 113/179 (63.13%), Query Frame = 1
Query: 16 QRLLARVSYDGMAYRGFQLQPGNAKTVQGELEAVLSKRFGKGIYVVGASRTDTGVHARGQAVHFDLPSKAAGDMGRLEYACNQMLPEDIRMWNLTVAPAPSPERLAMGLPFHANV--DASSKLYSYRIFIGPVVCPLDQLFRAHVPG----PIDLGLLDDALQQFRGTHNFAAFANQLD 534
QR ARV+YDG + GFQLQP +TVQG LE VL +R G+ + +VGA RTDTGVHARGQA+HFDL S + + ++E++ N MLP D+ +WNL++AP E + NV ++ KLYSYR+ + PV+ PL++ R H +D+ LL L + GTH+F AFA L+
Sbjct: 22 QRYRARVAYDGAGFHGFQLQPEGKRTVQGCLEDVLGQRLGQSVRLVGAGRTDTGVHARGQAIHFDLHSPLSEPLSQIEHSINAMLPTDVCLWNLSLAPTDDTETAQPSQQYLWNVLYNSVGKLYSYRLCLAPVMSPLERHHRWHPDSLHGKAVDIPLLQRLLNYYEGTHDFRAFAGALE 200
BLAST of mRNA_P-wetherbeei_contig18311.1.1 vs. uniprot
Match: F0Y1Q4_AURAN (tRNA pseudouridine synthase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y1Q4_AURAN) HSP 1 Score: 151 bits (382), Expect = 5.630e-42 Identity = 87/174 (50.00%), Postives = 111/174 (63.79%), Query Frame = 1
Query: 19 RLLARVSYDGMAYRGFQLQPGNAKTVQGELEAVLSKRFGKG-IYVVGASRTDTGVHARGQAVHFDLPSKAAGD--MGRLEYACNQMLPEDIRMWNLTVAPAPSPERLAMGLPFHANVDASSKLYSYRIFIGPVVC-PLDQLFRAHVP-GPIDLGLLDDALQQFRGTHNFAAFAN 525
R RV+YDG ++G+Q+QPG A+TVQGEL A L RFG I +GASRTD GVHARGQ H DLP G + LE+ N++LP+D R+ +L APAP P + GLP+HA +A+ K Y+YR+ PL +L+R HV +D G LDDAL F G H+FAAFAN
Sbjct: 34 RYALRVAYDGTRFKGWQVQPGGARTVQGELNAALRTRFGGADIPTLGASRTDAGVHARGQCAHADLPVAPLGGAPLELLEHQINRLLPDDARVHDLRPAPAPKPWQAREGLPWHAIANAAGKRYAYRLTARRGSADPLGRLYRGHVAYRDVDFGRLDDALSCFVGEHDFAAFAN 207
BLAST of mRNA_P-wetherbeei_contig18311.1.1 vs. uniprot
Match: A0A7S4MSL3_9STRA (tRNA pseudouridine synthase n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MSL3_9STRA) HSP 1 Score: 144 bits (364), Expect = 1.280e-38 Identity = 84/183 (45.90%), Postives = 111/183 (60.66%), Query Frame = 1
Query: 19 RLLARVSYDGMAYRGFQLQPGNAKTVQGELEAVLSKRFGKGIYVVGASRTDTGVHARGQAVHFDLPSKAAG-------DMGRLEYACNQMLPEDIRMWNLTVAPAPSPERLAMGLP----FHANVDASSKLYSYRIFIGPVVCPLDQLFRAHVPGPIDLGLLDDALQQFRGTHNFAAFANQLD 534
R ARV+YDG + G+Q Q +T+QG++EAVLS+RF + + +VGA RTD GVHARGQA HFDL + G D+ +L+ + N ML DIR+WN AP PS + G+ +H +A KLYSYRI P + PL + R HV P ++ LL ALQ F GTH+F AFA +D
Sbjct: 90 RYRARVAYDGTGFNGWQTQ-AKGRTIQGDIEAVLSRRFDRPVRIVGAGRTDAGVHARGQAFHFDLRADEIGVADSKCFDL-QLQRSLNSMLRRDIRVWNTCQAPPPSSYKNWEGIERNHKWHVIYNAEKKLYSYRISTAPYLDPLLRHTRTHVFDPTNIELLRTALQHFEGTHDFRAFAGAID 270
BLAST of mRNA_P-wetherbeei_contig18311.1.1 vs. uniprot
Match: R7QN10_CHOCR (tRNA pseudouridine synthase n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QN10_CHOCR) HSP 1 Score: 141 bits (355), Expect = 1.380e-37 Identity = 89/186 (47.85%), Postives = 114/186 (61.29%), Query Frame = 1
Query: 16 QRLLARVSYDGMAYRGFQLQPGNAKTVQGELEAVLSKRFGKGIYVVGASRTDTGVHARGQAVHFDLPSKAAGDMGRLE----YACNQMLPEDIRMWNLTVAPAPSPERLA-----MGL---PFHANVDASSKLYSYRIFIGPVVCPLDQLFRAHVPGPIDLG----LLDDALQQFRGTHNFAAFAN 525
QR+ ARV+YDG YRG+Q Q + TVQG LE L ++FG I VVGASRTDTGVHARGQA+HFD+P A G E Y NQMLP D+R+ L+VAP P ++ +G+ P+HA +A KLY+YRI PV PL +L+R H G LL +A +F G+H+F+AF N
Sbjct: 54 QRIRARVAYDGTLYRGWQYQT-DQPTVQGALEDALRRKFGHTIRVVGASRTDTGVHARGQAMHFDIPIARALRDGESERKFHYTLNQMLPPDVRVPVLSVAPTVVPCKVTDECGNVGIATRPWHAIYNAKGKLYTYRISTSPVFDPLGRLYRYHEWRATKFGFSEELLREASAKFVGSHDFSAFTN 238
BLAST of mRNA_P-wetherbeei_contig18311.1.1 vs. uniprot
Match: A0A5J4YW71_PORPP (tRNA pseudouridine synthase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YW71_PORPP) HSP 1 Score: 140 bits (353), Expect = 5.030e-37 Identity = 78/189 (41.27%), Postives = 111/189 (58.73%), Query Frame = 1
Query: 1 MSGKNQRLLARVSYDGMAYRGFQLQPGNAKTVQGELEAVLSKRFGKGIYVVGASRTDTGVHARGQAVHFDLPSKA---------AGDMGRLEYACNQMLPEDIRMWNLTVAPAPSPERLAMG---LPFHANVDASSKLYSYRIFIGPVVCPLDQLFRAHVPGPIDLGLLDDALQQFRGTHNFAAFANQL 531
+ G+ R V+YDG +RG+Q Q +VQ LE V S+R VVGASRTDTGVHARGQ HFD+P + + + RLE+ N+MLP ++++ + VAP PS +L G P+H+ A K+YSY+I + PL++L+R H D L + ALQ+F GTH+F++FAN+L
Sbjct: 91 LRGETYRCRMTVAYDGTEFRGWQYQINTRNSVQATLEKVFSRRLNGFTRVVGASRTDTGVHARGQVAHFDIPEEIPKEDLQQDDSSGLSRLEFQVNRMLPANLQVLRMEVAPPPSLVKLPSGERLKPWHSIYCAQHKIYSYKIMFATCMDPLERLYRHHEYQACDTDLFEAALQRFVGTHDFSSFANRL 279
BLAST of mRNA_P-wetherbeei_contig18311.1.1 vs. uniprot
Match: B8CDY0_THAPS (tRNA pseudouridine synthase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CDY0_THAPS) HSP 1 Score: 135 bits (341), Expect = 2.740e-36 Identity = 80/174 (45.98%), Postives = 110/174 (63.22%), Query Frame = 1
Query: 31 RVSYDGMAYRGFQLQPGNAKTVQGELEAVLSKRFGKGIYVVGASRTDTGVHARGQAVHFDL-----PSKAAGDMGRLEYACNQMLPEDIRMWNLTVAPAPSPERLAMGLPFHANVDASSKLYSYRIFIGPVVC-PLDQLFRAHVPGPIDLGLLDDALQQFRGTHNFAAFANQLD 534
RV+Y G + G+QLQPG + TVQGE+E VL++RF + I VVGA RTD GVHARGQA+HFDL P K L+++ N+M+P DIRM++L +AP P+HA A SK YSYR+ +GP + P+++ R H +D+ L+ LQ + GTH+F AF QL+
Sbjct: 1 RVAYHGTPFNGWQLQPGRS-TVQGEIEEVLTRRFHRRIPVVGAGRTDAGVHARGQAIHFDLFHDEIPFKPPTPPEILQHSMNRMMPLDIRMFHLQLAPY---------TPWHAIQRAQSKWYSYRLTLGPTLWNPMERFTRTHFVH-LDMERLESILQLYVGTHDFGAFGGQLE 163
BLAST of mRNA_P-wetherbeei_contig18311.1.1 vs. uniprot
Match: F0Y1Q5_AURAN (tRNA pseudouridine synthase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y1Q5_AURAN) HSP 1 Score: 132 bits (333), Expect = 1.590e-34 Identity = 79/157 (50.32%), Postives = 99/157 (63.06%), Query Frame = 1
Query: 70 LQPGNAKTVQGELEAVLSKRFGKG-IYVVGASRTDTGVHARGQAVHFDLPSKAAGD--MGRLEYACNQMLPEDIRMWNLTVAPAPSPERLAMGLPFHANVDASSKLYSYRIFIGPVVC-PLDQLFRAHVP-GPIDLGLLDDALQQFRGTHNFAAFAN 525
+QPG A+TVQGEL A L RFG I +GASRTD GVHARGQ H DLP G + LE+ N++LP+D R+ +L APAP P + GLP+HA +A+ K Y+YR+ PL +L+R HV +D G LDDAL F G H+FAAFAN
Sbjct: 67 VQPGRARTVQGELNAALRTRFGGADIPTLGASRTDAGVHARGQCAHADLPVAPLGGAPLELLEHQINRLLPDDARVHDLRPAPAPKPWQAREGLPWHAIANAAGKRYAYRLTARRGSADPLGRLYRGHVAYRAVDFGRLDDALACFVGEHDFAAFAN 223
BLAST of mRNA_P-wetherbeei_contig18311.1.1 vs. uniprot
Match: A0A482SL84_9ARCH (tRNA pseudouridine synthase A n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SL84_9ARCH) HSP 1 Score: 133 bits (334), Expect = 2.010e-34 Identity = 74/175 (42.29%), Postives = 99/175 (56.57%), Query Frame = 1
Query: 19 RLLARVSYDGMAYRGFQLQPG-NAKTVQGELEAVLSKRFGKGIYVVGASRTDTGVHARGQAVHFDLPSKA---AGDMGRLEYACNQMLPEDIRMWNLTVAPAPSPERLAMGLPFHANVDASSKLYSYRIFIGPVVCPLDQLFRAHVPGPIDLGLLDDALQQFRGTHNFAAFANQL 531
R +ARVSYDG AYRG+Q Q KT+QG + LSKR + + + GA RTD GVHA+GQ +HFDL + ++ NQMLP DIR++N+++AP + E++ G PFHA A K Y YR V P+ + H D L D LQ F G H+FA F N++
Sbjct: 75 RYVARVSYDGTAYRGWQQQSQPRTKTIQGTINQNLSKRLSREVRITGAGRTDQGVHAKGQGIHFDLFDHEYLNPDSIPNFQFKLNQMLPTDIRVYNMSLAPPGTVEQMLTGDPFHATKSAIGKKYIYRYCTNQFVEPIHRHIYTHFYREYDYSTLPDCLQCFVGPHDFACFGNKV 249 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18311.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig18311.1.1 >prot_P-wetherbeei_contig18311.1.1 ID=prot_P-wetherbeei_contig18311.1.1|Name=mRNA_P-wetherbeei_contig18311.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=178bp MSGKNQRLLARVSYDGMAYRGFQLQPGNAKTVQGELEAVLSKRFGKGIYVback to top mRNA from alignment at P-wetherbeei_contig18311:370..1222+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig18311.1.1 ID=mRNA_P-wetherbeei_contig18311.1.1|Name=mRNA_P-wetherbeei_contig18311.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=853bp|location=Sequence derived from alignment at P-wetherbeei_contig18311:370..1222+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig18311:370..1222+ >mRNA_P-wetherbeei_contig18311.1.1 ID=mRNA_P-wetherbeei_contig18311.1.1|Name=mRNA_P-wetherbeei_contig18311.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=534bp|location=Sequence derived from alignment at P-wetherbeei_contig18311:370..1222+ (Phaeothamnion wetherbeei SAG_119_79)back to top |