mRNA_P-wetherbeei_contig18308.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18308.1.1
Unique NamemRNA_P-wetherbeei_contig18308.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig18308.1.1 vs. uniprot
Match: A0A6I3F0Q3_9ACTN (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A6I3F0Q3_9ACTN)

HSP 1 Score: 167 bits (424), Expect = 1.620e-50
Identity = 90/148 (60.81%), Postives = 110/148 (74.32%), Query Frame = 1
Query:   10 LDERLWREHSAELLRFGTLLVGPTDAHDVVSAAFLRSVPRLRDDRIRNQRAYLFRSVTNEALDHRRRRANRWKRDLRAVMSSTASAPNDSHVDVRRAVADLSVRQRSVVYLAYWEDMPERAIADVLGISSGSVRRHLVRARAHLRKAL 453
            L E+LWREH+AELLRF T+LVGP+DAHD+V  A L++   L    +RN+RAYLFR+V+N A D RR R  RW RDL A+    A AP DS +DVRRAVA+LS+ QR+VVYL YWED+ ER  A +L +S G+VRRHL RAR  LRKAL
Sbjct:   11 LTEQLWREHAAELLRFATVLVGPSDAHDLVVEAVLKASDSLSLGDVRNRRAYLFRAVSNRAHDLRRSRERRWVRDLAAI-GPLAGAPPDSLIDVRRAVANLSLSQRAVVYLVYWEDLTERDTAALLRVSPGTVRRHLFRARTQLRKAL 157          
BLAST of mRNA_P-wetherbeei_contig18308.1.1 vs. uniprot
Match: A0A6I3AMH4_9ACTN (Sigma-70 family RNA polymerase sigma factor n=2 Tax=root TaxID=1 RepID=A0A6I3AMH4_9ACTN)

HSP 1 Score: 165 bits (418), Expect = 1.540e-49
Identity = 87/150 (58.00%), Postives = 108/150 (72.00%), Query Frame = 1
Query:    4 GALDERLWREHSAELLRFGTLLVGPTDAHDVVSAAFLRSVPRLRDDRIRNQRAYLFRSVTNEALDHRRRRANRWKRDLRAVMSSTASAPNDSHVDVRRAVADLSVRQRSVVYLAYWEDMPERAIADVLGISSGSVRRHLVRARAHLRKAL 453
            G   + LWR H+  ++RF T+LVG TDAHD+   AFLRS P +   R+ N RAYL R+V N A D RR R  +W RDL AV  ++ SA ++ +VDVRRAVA+LS+ QR+V+Y  YWED+ ER +A VLGIS GSV RHLVRARAHLRKAL
Sbjct:   14 GNRTDDLWRNHAPVMMRFATVLVGSTDAHDIAVEAFLRSAPAVISGRVDNPRAYLMRAVANRAHDLRRGRERQWMRDLAAVQPAS-SAAHEPNVDVRRAVAELSLTQRAVIYFVYWEDLRERDVAAVLGISLGSVHRHLVRARAHLRKAL 162          
BLAST of mRNA_P-wetherbeei_contig18308.1.1 vs. uniprot
Match: A0A524MTB4_9ACTN (Sigma-70 family RNA polymerase sigma factor n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A524MTB4_9ACTN)

HSP 1 Score: 164 bits (414), Expect = 5.350e-49
Identity = 82/146 (56.16%), Postives = 108/146 (73.97%), Query Frame = 1
Query:   16 ERLWREHSAELLRFGTLLVGPTDAHDVVSAAFLRSVPRLRDDRIRNQRAYLFRSVTNEALDHRRRRANRWKRDLRAVMSSTASAPNDSHVDVRRAVADLSVRQRSVVYLAYWEDMPERAIADVLGISSGSVRRHLVRARAHLRKAL 453
            ++LWR H+A+L+RF T+LVGP DAHD+   AFLR+ P +  + + N RAYL R+V N A D RR R  RW+RDL AV  ++   P D+ +DVRRAV+ LS+ QR+V+Y  YWED+ ER IA +L ++ G+VRRHLVRARAHLRKAL
Sbjct:   13 DQLWRAHAADLMRFATVLVGPVDAHDIAVEAFLRAAPIVDGETVTNPRAYLMRAVANHANDLRRSRERRWRRDLAAVGPASTVGP-DTFLDVRRAVSSLSLAQRTVIYFVYWEDLSERDIATLLQVAPGTVRRHLVRARAHLRKAL 157          
BLAST of mRNA_P-wetherbeei_contig18308.1.1 vs. uniprot
Match: A0A7K0VF71_9ACTN (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A7K0VF71_9ACTN)

HSP 1 Score: 157 bits (397), Expect = 2.040e-46
Identity = 81/146 (55.48%), Postives = 104/146 (71.23%), Query Frame = 1
Query:   16 ERLWREHSAELLRFGTLLVGPTDAHDVVSAAFLRSVPRLRDDRIRNQRAYLFRSVTNEALDHRRRRANRWKRDLRAVMSSTASAPNDSHVDVRRAVADLSVRQRSVVYLAYWEDMPERAIADVLGISSGSVRRHLVRARAHLRKAL 453
            ++LWR H+A+L+RF T+LVGP DAHDV   AFLR+   L    + + RAYL R+V N A D RR R  RW+RDL AV  S+ + P DS +DVR AV+ LS+ QR+VVY  YWED+ E  +A +L ++ G+VRRHLVRAR HLRKAL
Sbjct:   13 DQLWRSHAADLIRFATVLVGPADAHDVAVEAFLRASAVLAGGAVADPRAYLMRAVVNHANDLRRSRERRWRRDLAAVGPSSTAGP-DSFLDVRHAVSSLSLAQRTVVYFVYWEDLSESGVAALLQVAPGTVRRHLVRARTHLRKAL 157          
BLAST of mRNA_P-wetherbeei_contig18308.1.1 vs. uniprot
Match: A0A2H6HH45_9BACT (RNA polymerase sigma-E factor n=1 Tax=bacterium BMS3Bbin02 TaxID=2005725 RepID=A0A2H6HH45_9BACT)

HSP 1 Score: 146 bits (368), Expect = 5.270e-42
Identity = 80/149 (53.69%), Postives = 104/149 (69.80%), Query Frame = 1
Query:   13 DERLWREHSAELLRFGTLLVGPTDAHDVVSAAFLRSVPRLRDDRIRNQRAYLFRSVTNEALDHRRRRANRWKRDLRAVMSSTASAPNDSHVDVRRAVADLSVRQRSVVYLAYWEDMPERAIADVLGISSGSVRRHLVRARAHLRKALHD 459
            D  ++ EH+  L+RF T+LVGP DA DVVS+A LR +       + NQR+YL ++V NEA + RR    R  R+ R V +++ S P + H +VR AVA LSVRQR+ VYLAYWEDM +  IAD LGIS+GSVRRHL RAR HLR+AL++
Sbjct:   10 DAEIYAEHATALVRFATVLVGPNDAADVVSSAVLRVLSSPGWTSVTNQRSYLHQAVANEARNFRRGETRRHDRETR-VPTASVSYPREVHPEVRAAVARLSVRQRATVYLAYWEDMTDHMIADYLGISAGSVRRHLARARNHLRRALNE 157          
BLAST of mRNA_P-wetherbeei_contig18308.1.1 vs. uniprot
Match: A0A7V9DL97_9ACTN (Sigma-70 family RNA polymerase sigma factor n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7V9DL97_9ACTN)

HSP 1 Score: 142 bits (358), Expect = 1.440e-40
Identity = 79/146 (54.11%), Postives = 99/146 (67.81%), Query Frame = 1
Query:   16 ERLWREHSAELLRFGTLLVGPTDAHDVVSAAFLRSVPRLRDDRIRNQRAYLFRSVTNEALDHRRRRANRWKRDLRAVMSSTASAPNDSHVDVRRAVADLSVRQRSVVYLAYWEDMPERAIADVLGISSGSVRRHLVRARAHLRKAL 453
            E LW  H+ +LLR  T+LVGP +A DVV+ AF+R+   + + R+   RAYLFR+VTN A+D  RRRA    RDL  V  S   +  D  VDVR AVA LSVRQR+ VY  YW DM ER IA+ +G+S G+VRRHLVRA++ LRK L
Sbjct:    5 EGLWARHAPDLLRLATVLVGPNEAEDVVADAFVRACRPIVEGRVAAPRAYLFRAVTNRAMDQHRRRARDRTRDLLLVPLSCEDS--DPRVDVRAAVAGLSVRQRAAVYFRYWHDMSERQIAESMGVSVGTVRRHLVRAQSILRKEL 148          
BLAST of mRNA_P-wetherbeei_contig18308.1.1 vs. uniprot
Match: A0A2E0RY54_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E0RY54_9ACTN)

HSP 1 Score: 129 bits (323), Expect = 7.690e-35
Identity = 76/152 (50.00%), Postives = 97/152 (63.82%), Query Frame = 1
Query:   19 RLWREHSAELLRFGTLLVGPTDAHDVVSAAFLRSVPRLRDDRI-RNQRAYLFRSVTNEALDHRRRRANRWKRDLRAVMSST----ASAPNDSH--VDVRRAVADLSVRQRSVVYLAYWEDMPERAIADVLGISSGSVRRHLVRARAHLRKAL 453
            +LW+ H+ +L +F +LLVGP DA DVVS AF R +  +   R   N R YL R+V N A D RR    R  RDL AV  +     +S P  S   VD+RRAVADLSV+QR+V+Y  YWED+  R +AD+L I+  +VRRHL RAR HLR+ L
Sbjct:   35 QLWQTHARDLTQFASLLVGPHDAPDVVSIAFHRVMTVIDSGRAPTNIRGYLMRTVANVATDQRRSARRRQARDLHAVARAADRGESSGPERSALGVDLRRAVADLSVQQRAVIYFTYWEDLDSRQVADLLDIAPATVRRHLARARLHLRREL 186          
BLAST of mRNA_P-wetherbeei_contig18308.1.1 vs. uniprot
Match: A0A2H6HBD8_9BACT (RNA polymerase sigma-E factor n=2 Tax=Bacteria TaxID=2 RepID=A0A2H6HBD8_9BACT)

HSP 1 Score: 127 bits (320), Expect = 8.720e-35
Identity = 74/153 (48.37%), Postives = 97/153 (63.40%), Query Frame = 1
Query:    1 GGALDERLWREHSAELLRFGTLLVGPTDAHDVVSAAFLRSVPRLRDDRIRNQRAYLFRSVTNEALDHRRRRANRWKRDLRAVMSSTASAPNDSHVDVRRAVADLSVRQRSVVYLAYWEDMPERAIADVLGISSGSVRRHLVRARAHLRKALHD 459
            G   D  ++R+H+ +L+RF T+LVG  DA DVV+ AFLR +       + ++RAYLFR V NEA + +R  A R  R+           P+    DV  A+  LSVRQRSVVYLAYWEDM ++ IA+ LGI SGSVRRHL RAR+ LR+ L +
Sbjct:    4 GRVSDAEVYRQHARDLVRFATVLVGSDDAQDVVANAFLRCLSSNGWQEVTDRRAYLFRVVANEARNLKRSAARRRVREASVGGDPAVEIPSP-RPDVVAAIGGLSVRQRSVVYLAYWEDMTDQMIAEYLGIGSGSVRRHLGRARSKLREVLDE 155          
BLAST of mRNA_P-wetherbeei_contig18308.1.1 vs. uniprot
Match: A0A6C7E4X4_ILUCY (Putative RNA polymerase ECF subfamily sigma factor n=3 Tax=Acidimicrobiales TaxID=84993 RepID=A0A6C7E4X4_ILUCY)

HSP 1 Score: 126 bits (316), Expect = 4.300e-34
Identity = 76/152 (50.00%), Postives = 94/152 (61.84%), Query Frame = 1
Query:    7 ALDERL---WREHSAELLRFGTLLVGPTDAHDVVSAAFLRSVPRLRDDRIRNQRAYLFRSVTNEALDHRRRRANRWKRDLRAVMSSTASAPNDSHVDVRRAVADLSVRQRSVVYLAYWEDMPERAIADVLGISSGSVRRHLVRARAHLRKAL 453
            A DE+L   WR H+   +RF T +VGP DAHDV + AFLR   +     I +   YL R+V N+A D  R+R  RW+RDL AV     + P    VD+ RAVA LSV+QRSVV+LAYW DM E  IA+ L I+  +V R L RAR  LRKAL
Sbjct:   11 AADEQLDVAWRTHAPAAMRFATAVVGPIDAHDVTTTAFLRVTQQPDWTDIEHFDRYLIRAVRNQAQDLYRQRRRRWQRDLLAVRPEATTDPLPD-VDLLRAVASLSVQQRSVVFLAYWHDMTEAEIAETLDIARSTVHRTLARARIALRKAL 161          
BLAST of mRNA_P-wetherbeei_contig18308.1.1 vs. uniprot
Match: A0A7W0KXX1_9ACTN (RNA polymerase sigma factor n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W0KXX1_9ACTN)

HSP 1 Score: 125 bits (315), Expect = 6.460e-34
Identity = 71/155 (45.81%), Postives = 98/155 (63.23%), Query Frame = 1
Query:    1 GGALDERLWREHSAELLRFGTLLVGPTDAHDVVSAAFLRSVPRLRDDRIRNQRAYLFRSVTNEALDHRRRRANRWKRDLRAVMSSTASAPN---DSHVDVRRAVADLSVRQRSVVYLAYWEDMPERAIADVLGISSGSVRRHLVRARAHLRKALH 456
            G   D   +R H+ EL R+ T+LVGPTDA DVV+ A L +        + N+RAYL+RSV N AL HRR  A+R +R+    +SS + AP    ++ +D  +A+A LS +QR+VV+L YWED     IA +L +S G+VR+ L RAR HLR+ LH
Sbjct:    9 GSPADLATYRRHADELSRYATVLVGPTDAADVVAEAVLSAFSASGWRDVDNRRAYLYRSVLNRALSHRRSTASRRRRETVVALSSPSIAPAASPEAELDAHKALAALSPQQRAVVHLTYWEDQTPAQIAGLLDVSEGTVRKQLARARDHLREILH 163          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18308.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6I3F0Q3_9ACTN1.620e-5060.81Uncharacterized protein n=2 Tax=root TaxID=1 RepID... [more]
A0A6I3AMH4_9ACTN1.540e-4958.00Sigma-70 family RNA polymerase sigma factor n=2 Ta... [more]
A0A524MTB4_9ACTN5.350e-4956.16Sigma-70 family RNA polymerase sigma factor n=1 Ta... [more]
A0A7K0VF71_9ACTN2.040e-4655.48Uncharacterized protein n=2 Tax=root TaxID=1 RepID... [more]
A0A2H6HH45_9BACT5.270e-4253.69RNA polymerase sigma-E factor n=1 Tax=bacterium BM... [more]
A0A7V9DL97_9ACTN1.440e-4054.11Sigma-70 family RNA polymerase sigma factor n=1 Ta... [more]
A0A2E0RY54_9ACTN7.690e-3550.00Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A2H6HBD8_9BACT8.720e-3548.37RNA polymerase sigma-E factor n=2 Tax=Bacteria Tax... [more]
A0A6C7E4X4_ILUCY4.300e-3450.00Putative RNA polymerase ECF subfamily sigma factor... [more]
A0A7W0KXX1_9ACTN6.460e-3445.81RNA polymerase sigma factor n=1 Tax=Acidimicrobiia... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18308contigP-wetherbeei_contig18308:485..946 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1313172.YM304_12490
PFAMsSigma70_r2,Sigma70_r4_2
Model size462
Max annot lvl2|Bacteria
KEGG koko:K03088
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.06e-35
EggNOG OGsCOG1595@1|root,COG1595@2|Bacteria
DescriptionDNA-templated transcription, initiation
Cds size462
COG categoryK
BRITEko00000,ko03021
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186142.2936995-CDS-P-wetherbeei_contig18308:484..9461683186142.2936995-CDS-P-wetherbeei_contig18308:484..946Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18308 485..946 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18308.1.1prot_P-wetherbeei_contig18308.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18308 485..946 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18308.1.1

>prot_P-wetherbeei_contig18308.1.1 ID=prot_P-wetherbeei_contig18308.1.1|Name=mRNA_P-wetherbeei_contig18308.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=154bp
GGALDERLWREHSAELLRFGTLLVGPTDAHDVVSAAFLRSVPRLRDDRIR
NQRAYLFRSVTNEALDHRRRRANRWKRDLRAVMSSTASAPNDSHVDVRRA
VADLSVRQRSVVYLAYWEDMPERAIADVLGISSGSVRRHLVRARAHLRKA
LHD*
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mRNA from alignment at P-wetherbeei_contig18308:485..946-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18308.1.1 ID=mRNA_P-wetherbeei_contig18308.1.1|Name=mRNA_P-wetherbeei_contig18308.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=462bp|location=Sequence derived from alignment at P-wetherbeei_contig18308:485..946- (Phaeothamnion wetherbeei SAG_119_79)
GGAGGCGCGCTCGACGAGCGGCTGTGGCGCGAGCACAGCGCCGAGCTGCT CCGCTTCGGTACGTTGCTCGTCGGTCCGACCGATGCTCACGATGTCGTGT CAGCCGCGTTCCTTCGTTCGGTGCCGCGCCTCCGCGACGACCGGATCAGG AACCAGCGCGCCTACCTGTTCCGATCCGTCACGAACGAGGCACTCGACCA CCGCCGCCGCCGTGCCAATCGGTGGAAGCGCGACCTTCGAGCGGTGATGT CGTCGACCGCTTCAGCGCCGAACGACTCGCACGTCGATGTTCGCCGCGCC GTTGCGGATCTGAGCGTGAGACAGCGATCGGTCGTCTATCTCGCCTACTG GGAGGACATGCCCGAGCGCGCGATCGCCGATGTCCTCGGCATCTCCTCCG GCTCCGTCCGCCGTCATCTCGTGCGTGCACGAGCGCACCTTCGAAAGGCA CTCCATGACTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18308:485..946-

>mRNA_P-wetherbeei_contig18308.1.1 ID=mRNA_P-wetherbeei_contig18308.1.1|Name=mRNA_P-wetherbeei_contig18308.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=462bp|location=Sequence derived from alignment at P-wetherbeei_contig18308:485..946- (Phaeothamnion wetherbeei SAG_119_79)
GGAGGCGCGCTCGACGAGCGGCTGTGGCGCGAGCACAGCGCCGAGCTGCT
CCGCTTCGGTACGTTGCTCGTCGGTCCGACCGATGCTCACGATGTCGTGT
CAGCCGCGTTCCTTCGTTCGGTGCCGCGCCTCCGCGACGACCGGATCAGG
AACCAGCGCGCCTACCTGTTCCGATCCGTCACGAACGAGGCACTCGACCA
CCGCCGCCGCCGTGCCAATCGGTGGAAGCGCGACCTTCGAGCGGTGATGT
CGTCGACCGCTTCAGCGCCGAACGACTCGCACGTCGATGTTCGCCGCGCC
GTTGCGGATCTGAGCGTGAGACAGCGATCGGTCGTCTATCTCGCCTACTG
GGAGGACATGCCCGAGCGCGCGATCGCCGATGTCCTCGGCATCTCCTCCG
GCTCCGTCCGCCGTCATCTCGTGCGTGCACGAGCGCACCTTCGAAAGGCA
CTCCATGACTGA
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