mRNA_P-wetherbeei_contig18308.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig18308.1.1 vs. uniprot
Match: A0A6I3F0Q3_9ACTN (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A6I3F0Q3_9ACTN) HSP 1 Score: 167 bits (424), Expect = 1.620e-50 Identity = 90/148 (60.81%), Postives = 110/148 (74.32%), Query Frame = 1
Query: 10 LDERLWREHSAELLRFGTLLVGPTDAHDVVSAAFLRSVPRLRDDRIRNQRAYLFRSVTNEALDHRRRRANRWKRDLRAVMSSTASAPNDSHVDVRRAVADLSVRQRSVVYLAYWEDMPERAIADVLGISSGSVRRHLVRARAHLRKAL 453
L E+LWREH+AELLRF T+LVGP+DAHD+V A L++ L +RN+RAYLFR+V+N A D RR R RW RDL A+ A AP DS +DVRRAVA+LS+ QR+VVYL YWED+ ER A +L +S G+VRRHL RAR LRKAL
Sbjct: 11 LTEQLWREHAAELLRFATVLVGPSDAHDLVVEAVLKASDSLSLGDVRNRRAYLFRAVSNRAHDLRRSRERRWVRDLAAI-GPLAGAPPDSLIDVRRAVANLSLSQRAVVYLVYWEDLTERDTAALLRVSPGTVRRHLFRARTQLRKAL 157
BLAST of mRNA_P-wetherbeei_contig18308.1.1 vs. uniprot
Match: A0A6I3AMH4_9ACTN (Sigma-70 family RNA polymerase sigma factor n=2 Tax=root TaxID=1 RepID=A0A6I3AMH4_9ACTN) HSP 1 Score: 165 bits (418), Expect = 1.540e-49 Identity = 87/150 (58.00%), Postives = 108/150 (72.00%), Query Frame = 1
Query: 4 GALDERLWREHSAELLRFGTLLVGPTDAHDVVSAAFLRSVPRLRDDRIRNQRAYLFRSVTNEALDHRRRRANRWKRDLRAVMSSTASAPNDSHVDVRRAVADLSVRQRSVVYLAYWEDMPERAIADVLGISSGSVRRHLVRARAHLRKAL 453
G + LWR H+ ++RF T+LVG TDAHD+ AFLRS P + R+ N RAYL R+V N A D RR R +W RDL AV ++ SA ++ +VDVRRAVA+LS+ QR+V+Y YWED+ ER +A VLGIS GSV RHLVRARAHLRKAL
Sbjct: 14 GNRTDDLWRNHAPVMMRFATVLVGSTDAHDIAVEAFLRSAPAVISGRVDNPRAYLMRAVANRAHDLRRGRERQWMRDLAAVQPAS-SAAHEPNVDVRRAVAELSLTQRAVIYFVYWEDLRERDVAAVLGISLGSVHRHLVRARAHLRKAL 162
BLAST of mRNA_P-wetherbeei_contig18308.1.1 vs. uniprot
Match: A0A524MTB4_9ACTN (Sigma-70 family RNA polymerase sigma factor n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A524MTB4_9ACTN) HSP 1 Score: 164 bits (414), Expect = 5.350e-49 Identity = 82/146 (56.16%), Postives = 108/146 (73.97%), Query Frame = 1
Query: 16 ERLWREHSAELLRFGTLLVGPTDAHDVVSAAFLRSVPRLRDDRIRNQRAYLFRSVTNEALDHRRRRANRWKRDLRAVMSSTASAPNDSHVDVRRAVADLSVRQRSVVYLAYWEDMPERAIADVLGISSGSVRRHLVRARAHLRKAL 453
++LWR H+A+L+RF T+LVGP DAHD+ AFLR+ P + + + N RAYL R+V N A D RR R RW+RDL AV ++ P D+ +DVRRAV+ LS+ QR+V+Y YWED+ ER IA +L ++ G+VRRHLVRARAHLRKAL
Sbjct: 13 DQLWRAHAADLMRFATVLVGPVDAHDIAVEAFLRAAPIVDGETVTNPRAYLMRAVANHANDLRRSRERRWRRDLAAVGPASTVGP-DTFLDVRRAVSSLSLAQRTVIYFVYWEDLSERDIATLLQVAPGTVRRHLVRARAHLRKAL 157
BLAST of mRNA_P-wetherbeei_contig18308.1.1 vs. uniprot
Match: A0A7K0VF71_9ACTN (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A7K0VF71_9ACTN) HSP 1 Score: 157 bits (397), Expect = 2.040e-46 Identity = 81/146 (55.48%), Postives = 104/146 (71.23%), Query Frame = 1
Query: 16 ERLWREHSAELLRFGTLLVGPTDAHDVVSAAFLRSVPRLRDDRIRNQRAYLFRSVTNEALDHRRRRANRWKRDLRAVMSSTASAPNDSHVDVRRAVADLSVRQRSVVYLAYWEDMPERAIADVLGISSGSVRRHLVRARAHLRKAL 453
++LWR H+A+L+RF T+LVGP DAHDV AFLR+ L + + RAYL R+V N A D RR R RW+RDL AV S+ + P DS +DVR AV+ LS+ QR+VVY YWED+ E +A +L ++ G+VRRHLVRAR HLRKAL
Sbjct: 13 DQLWRSHAADLIRFATVLVGPADAHDVAVEAFLRASAVLAGGAVADPRAYLMRAVVNHANDLRRSRERRWRRDLAAVGPSSTAGP-DSFLDVRHAVSSLSLAQRTVVYFVYWEDLSESGVAALLQVAPGTVRRHLVRARTHLRKAL 157
BLAST of mRNA_P-wetherbeei_contig18308.1.1 vs. uniprot
Match: A0A2H6HH45_9BACT (RNA polymerase sigma-E factor n=1 Tax=bacterium BMS3Bbin02 TaxID=2005725 RepID=A0A2H6HH45_9BACT) HSP 1 Score: 146 bits (368), Expect = 5.270e-42 Identity = 80/149 (53.69%), Postives = 104/149 (69.80%), Query Frame = 1
Query: 13 DERLWREHSAELLRFGTLLVGPTDAHDVVSAAFLRSVPRLRDDRIRNQRAYLFRSVTNEALDHRRRRANRWKRDLRAVMSSTASAPNDSHVDVRRAVADLSVRQRSVVYLAYWEDMPERAIADVLGISSGSVRRHLVRARAHLRKALHD 459
D ++ EH+ L+RF T+LVGP DA DVVS+A LR + + NQR+YL ++V NEA + RR R R+ R V +++ S P + H +VR AVA LSVRQR+ VYLAYWEDM + IAD LGIS+GSVRRHL RAR HLR+AL++
Sbjct: 10 DAEIYAEHATALVRFATVLVGPNDAADVVSSAVLRVLSSPGWTSVTNQRSYLHQAVANEARNFRRGETRRHDRETR-VPTASVSYPREVHPEVRAAVARLSVRQRATVYLAYWEDMTDHMIADYLGISAGSVRRHLARARNHLRRALNE 157
BLAST of mRNA_P-wetherbeei_contig18308.1.1 vs. uniprot
Match: A0A7V9DL97_9ACTN (Sigma-70 family RNA polymerase sigma factor n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7V9DL97_9ACTN) HSP 1 Score: 142 bits (358), Expect = 1.440e-40 Identity = 79/146 (54.11%), Postives = 99/146 (67.81%), Query Frame = 1
Query: 16 ERLWREHSAELLRFGTLLVGPTDAHDVVSAAFLRSVPRLRDDRIRNQRAYLFRSVTNEALDHRRRRANRWKRDLRAVMSSTASAPNDSHVDVRRAVADLSVRQRSVVYLAYWEDMPERAIADVLGISSGSVRRHLVRARAHLRKAL 453
E LW H+ +LLR T+LVGP +A DVV+ AF+R+ + + R+ RAYLFR+VTN A+D RRRA RDL V S + D VDVR AVA LSVRQR+ VY YW DM ER IA+ +G+S G+VRRHLVRA++ LRK L
Sbjct: 5 EGLWARHAPDLLRLATVLVGPNEAEDVVADAFVRACRPIVEGRVAAPRAYLFRAVTNRAMDQHRRRARDRTRDLLLVPLSCEDS--DPRVDVRAAVAGLSVRQRAAVYFRYWHDMSERQIAESMGVSVGTVRRHLVRAQSILRKEL 148
BLAST of mRNA_P-wetherbeei_contig18308.1.1 vs. uniprot
Match: A0A2E0RY54_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E0RY54_9ACTN) HSP 1 Score: 129 bits (323), Expect = 7.690e-35 Identity = 76/152 (50.00%), Postives = 97/152 (63.82%), Query Frame = 1
Query: 19 RLWREHSAELLRFGTLLVGPTDAHDVVSAAFLRSVPRLRDDRI-RNQRAYLFRSVTNEALDHRRRRANRWKRDLRAVMSST----ASAPNDSH--VDVRRAVADLSVRQRSVVYLAYWEDMPERAIADVLGISSGSVRRHLVRARAHLRKAL 453
+LW+ H+ +L +F +LLVGP DA DVVS AF R + + R N R YL R+V N A D RR R RDL AV + +S P S VD+RRAVADLSV+QR+V+Y YWED+ R +AD+L I+ +VRRHL RAR HLR+ L
Sbjct: 35 QLWQTHARDLTQFASLLVGPHDAPDVVSIAFHRVMTVIDSGRAPTNIRGYLMRTVANVATDQRRSARRRQARDLHAVARAADRGESSGPERSALGVDLRRAVADLSVQQRAVIYFTYWEDLDSRQVADLLDIAPATVRRHLARARLHLRREL 186
BLAST of mRNA_P-wetherbeei_contig18308.1.1 vs. uniprot
Match: A0A2H6HBD8_9BACT (RNA polymerase sigma-E factor n=2 Tax=Bacteria TaxID=2 RepID=A0A2H6HBD8_9BACT) HSP 1 Score: 127 bits (320), Expect = 8.720e-35 Identity = 74/153 (48.37%), Postives = 97/153 (63.40%), Query Frame = 1
Query: 1 GGALDERLWREHSAELLRFGTLLVGPTDAHDVVSAAFLRSVPRLRDDRIRNQRAYLFRSVTNEALDHRRRRANRWKRDLRAVMSSTASAPNDSHVDVRRAVADLSVRQRSVVYLAYWEDMPERAIADVLGISSGSVRRHLVRARAHLRKALHD 459
G D ++R+H+ +L+RF T+LVG DA DVV+ AFLR + + ++RAYLFR V NEA + +R A R R+ P+ DV A+ LSVRQRSVVYLAYWEDM ++ IA+ LGI SGSVRRHL RAR+ LR+ L +
Sbjct: 4 GRVSDAEVYRQHARDLVRFATVLVGSDDAQDVVANAFLRCLSSNGWQEVTDRRAYLFRVVANEARNLKRSAARRRVREASVGGDPAVEIPSP-RPDVVAAIGGLSVRQRSVVYLAYWEDMTDQMIAEYLGIGSGSVRRHLGRARSKLREVLDE 155
BLAST of mRNA_P-wetherbeei_contig18308.1.1 vs. uniprot
Match: A0A6C7E4X4_ILUCY (Putative RNA polymerase ECF subfamily sigma factor n=3 Tax=Acidimicrobiales TaxID=84993 RepID=A0A6C7E4X4_ILUCY) HSP 1 Score: 126 bits (316), Expect = 4.300e-34 Identity = 76/152 (50.00%), Postives = 94/152 (61.84%), Query Frame = 1
Query: 7 ALDERL---WREHSAELLRFGTLLVGPTDAHDVVSAAFLRSVPRLRDDRIRNQRAYLFRSVTNEALDHRRRRANRWKRDLRAVMSSTASAPNDSHVDVRRAVADLSVRQRSVVYLAYWEDMPERAIADVLGISSGSVRRHLVRARAHLRKAL 453
A DE+L WR H+ +RF T +VGP DAHDV + AFLR + I + YL R+V N+A D R+R RW+RDL AV + P VD+ RAVA LSV+QRSVV+LAYW DM E IA+ L I+ +V R L RAR LRKAL
Sbjct: 11 AADEQLDVAWRTHAPAAMRFATAVVGPIDAHDVTTTAFLRVTQQPDWTDIEHFDRYLIRAVRNQAQDLYRQRRRRWQRDLLAVRPEATTDPLPD-VDLLRAVASLSVQQRSVVFLAYWHDMTEAEIAETLDIARSTVHRTLARARIALRKAL 161
BLAST of mRNA_P-wetherbeei_contig18308.1.1 vs. uniprot
Match: A0A7W0KXX1_9ACTN (RNA polymerase sigma factor n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W0KXX1_9ACTN) HSP 1 Score: 125 bits (315), Expect = 6.460e-34 Identity = 71/155 (45.81%), Postives = 98/155 (63.23%), Query Frame = 1
Query: 1 GGALDERLWREHSAELLRFGTLLVGPTDAHDVVSAAFLRSVPRLRDDRIRNQRAYLFRSVTNEALDHRRRRANRWKRDLRAVMSSTASAPN---DSHVDVRRAVADLSVRQRSVVYLAYWEDMPERAIADVLGISSGSVRRHLVRARAHLRKALH 456
G D +R H+ EL R+ T+LVGPTDA DVV+ A L + + N+RAYL+RSV N AL HRR A+R +R+ +SS + AP ++ +D +A+A LS +QR+VV+L YWED IA +L +S G+VR+ L RAR HLR+ LH
Sbjct: 9 GSPADLATYRRHADELSRYATVLVGPTDAADVVAEAVLSAFSASGWRDVDNRRAYLYRSVLNRALSHRRSTASRRRRETVVALSSPSIAPAASPEAELDAHKALAALSPQQRAVVHLTYWEDQTPAQIAGLLDVSEGTVRKQLARARDHLREILH 163 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18308.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig18308.1.1 >prot_P-wetherbeei_contig18308.1.1 ID=prot_P-wetherbeei_contig18308.1.1|Name=mRNA_P-wetherbeei_contig18308.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=154bp GGALDERLWREHSAELLRFGTLLVGPTDAHDVVSAAFLRSVPRLRDDRIRback to top mRNA from alignment at P-wetherbeei_contig18308:485..946- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig18308.1.1 ID=mRNA_P-wetherbeei_contig18308.1.1|Name=mRNA_P-wetherbeei_contig18308.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=462bp|location=Sequence derived from alignment at P-wetherbeei_contig18308:485..946- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig18308:485..946- >mRNA_P-wetherbeei_contig18308.1.1 ID=mRNA_P-wetherbeei_contig18308.1.1|Name=mRNA_P-wetherbeei_contig18308.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=462bp|location=Sequence derived from alignment at P-wetherbeei_contig18308:485..946- (Phaeothamnion wetherbeei SAG_119_79)back to top |