mRNA_P-wetherbeei_contig18305.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18305.1.1
Unique NamemRNA_P-wetherbeei_contig18305.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18305.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18305contigP-wetherbeei_contig18305:247..1266 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1020
Hectar predicted targeting categoryother localisation
Exons1
Cds size777
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186142.239-UTR-P-wetherbeei_contig18305:246..3801683186142.239-UTR-P-wetherbeei_contig18305:246..380Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig18305 247..380 -
1683186142.2606516-UTR-P-wetherbeei_contig18305:1157..12661683186142.2606516-UTR-P-wetherbeei_contig18305:1157..1266Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig18305 1158..1266 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186142.2481802-CDS-P-wetherbeei_contig18305:380..11571683186142.2481802-CDS-P-wetherbeei_contig18305:380..1157Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18305 381..1157 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18305.1.1prot_P-wetherbeei_contig18305.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18305 381..1157 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18305.1.1

>prot_P-wetherbeei_contig18305.1.1 ID=prot_P-wetherbeei_contig18305.1.1|Name=mRNA_P-wetherbeei_contig18305.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=259bp
MAGGAAAPPVPFTAAPAVPLVVPLVPTQSASDAAAPAQFTALPRFLRDIC
LTTDGGAGPPPPVHWQQHWPEEQRPVTTLPTSAAQLVPLLVAGAAAASAA
AMSDNDDDDEVKVLFTVPSEAAATAAVPSAGAGGSVTGAPTSLAASALPE
AAPSVVASAAAAAAAAAAALLVAAASPAAAVSSARAPAKPSLSLLLPQQP
LQATGPVRPWRPAAAAAAAAAEARAAANAAKNMPMVKRKVPPGTADFGPS
AKRPSPQA*
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mRNA from alignment at P-wetherbeei_contig18305:247..1266-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18305.1.1 ID=mRNA_P-wetherbeei_contig18305.1.1|Name=mRNA_P-wetherbeei_contig18305.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1020bp|location=Sequence derived from alignment at P-wetherbeei_contig18305:247..1266- (Phaeothamnion wetherbeei SAG_119_79)
CGGGGAGGAAGAAGAGGACGGCGCAGACGGCAGCAGCGACGGCGGCGGCG
GCGGCGGCGGCGGTGGTGGCGACGGCGGCGGCGTCGGGGGCGGCATTCTC
GCGAACGTCATGGCCGGAGGCGCGGCGGCACCGCCGGTGCCCTTCACGGC
TGCGCCGGCCGTCCCGCTCGTAGTGCCGCTGGTCCCTACCCAGAGTGCCT
CGGACGCCGCTGCGCCTGCCCAGTTTACTGCCCTTCCGCGCTTCCTGCGC
GACATTTGCCTCACGACGGACGGGGGCGCGGGGCCGCCACCGCCGGTGCA
CTGGCAACAACATTGGCCGGAAGAGCAGCGGCCTGTGACGACGTTGCCAA
CATCGGCCGCGCAGCTCGTGCCGCTGTTGGTCGCTGGTGCCGCCGCCGCG
TCTGCTGCCGCCATGTCTGACAACGATGACGATGACGAAGTGAAAGTCCT
CTTCACGGTGCCGTCGGAAGCGGCCGCCACCGCCGCAGTGCCTAGTGCGG
GAGCTGGCGGGTCGGTGACGGGGGCTCCGACGTCTTTGGCTGCTTCTGCA
TTACCAGAAGCTGCTCCGTCGGTGGTGGCTTCGGCGGCGGCGGCGGCGGC
GGCGGCAGCGGCCGCATTGCTGGTGGCCGCCGCATCGCCGGCGGCGGCTG
TATCGTCAGCGAGGGCCCCGGCAAAACCTTCCCTGTCCCTGCTGCTGCCG
CAGCAGCCATTGCAAGCCACGGGCCCAGTGCGCCCGTGGCGCCCCGCCGC
CGCCGCCGCAGCCGCGGCGGCGGAAGCTCGAGCGGCTGCCAACGCCGCCA
AAAACATGCCTATGGTGAAGCGCAAGGTGCCGCCGGGGACGGCGGACTTT
GGCCCGAGTGCCAAGAGACCGTCACCGCAAGCTTAAGCGGCAGGCAGCGG
CCTCAACTCTTCCACGGTGGTTTTCGCCCTTGTTGCTAGCACCATGTTCT
CACTTGCGGAGACTGATCTCGTGGAAGGGACGGCGCTTTGCACACAAGCG
TGTGTGAACAACCTCCTTGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18305:247..1266-

>mRNA_P-wetherbeei_contig18305.1.1 ID=mRNA_P-wetherbeei_contig18305.1.1|Name=mRNA_P-wetherbeei_contig18305.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=777bp|location=Sequence derived from alignment at P-wetherbeei_contig18305:247..1266- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCGGAGGCGCGGCGGCACCGCCGGTGCCCTTCACGGCTGCGCCGGC
CGTCCCGCTCGTAGTGCCGCTGGTCCCTACCCAGAGTGCCTCGGACGCCG
CTGCGCCTGCCCAGTTTACTGCCCTTCCGCGCTTCCTGCGCGACATTTGC
CTCACGACGGACGGGGGCGCGGGGCCGCCACCGCCGGTGCACTGGCAACA
ACATTGGCCGGAAGAGCAGCGGCCTGTGACGACGTTGCCAACATCGGCCG
CGCAGCTCGTGCCGCTGTTGGTCGCTGGTGCCGCCGCCGCGTCTGCTGCC
GCCATGTCTGACAACGATGACGATGACGAAGTGAAAGTCCTCTTCACGGT
GCCGTCGGAAGCGGCCGCCACCGCCGCAGTGCCTAGTGCGGGAGCTGGCG
GGTCGGTGACGGGGGCTCCGACGTCTTTGGCTGCTTCTGCATTACCAGAA
GCTGCTCCGTCGGTGGTGGCTTCGGCGGCGGCGGCGGCGGCGGCGGCAGC
GGCCGCATTGCTGGTGGCCGCCGCATCGCCGGCGGCGGCTGTATCGTCAG
CGAGGGCCCCGGCAAAACCTTCCCTGTCCCTGCTGCTGCCGCAGCAGCCA
TTGCAAGCCACGGGCCCAGTGCGCCCGTGGCGCCCCGCCGCCGCCGCCGC
AGCCGCGGCGGCGGAAGCTCGAGCGGCTGCCAACGCCGCCAAAAACATGC
CTATGGTGAAGCGCAAGGTGCCGCCGGGGACGGCGGACTTTGGCCCGAGT
GCCAAGAGACCGTCACCGCAAGCTTAA
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