mRNA_P-wetherbeei_contig183.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig183.1.1
Unique NamemRNA_P-wetherbeei_contig183.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig183.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig183contigP-wetherbeei_contig183:1767..2884 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size783
Hectar predicted targeting categoryother localisation
Exons3
Cds size780
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186141.8313367-CDS-P-wetherbeei_contig183:1766..23691683186141.8313367-CDS-P-wetherbeei_contig183:1766..2369Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig183 1767..2369 +
1683186141.8395584-CDS-P-wetherbeei_contig183:2490..25531683186141.8395584-CDS-P-wetherbeei_contig183:2490..2553Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig183 2491..2553 +
1683186141.8473916-CDS-P-wetherbeei_contig183:2768..28821683186141.8473916-CDS-P-wetherbeei_contig183:2768..2882Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig183 2769..2882 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig183.1.1prot_P-wetherbeei_contig183.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig183 1767..2882 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig183.1.1

>prot_P-wetherbeei_contig183.1.1 ID=prot_P-wetherbeei_contig183.1.1|Name=mRNA_P-wetherbeei_contig183.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=260bp
AAAAAAAAAAVDDPTAGGVVVKRTSVNLSGNVRARQLWFRARGTIANGKG
HLGAVDTVSGIEEIASALRAAGNDADVGGGSGGGGGGGNGHGHGCGIHHG
GGGGGGGGIDGEHEDGDSGRHVPGRLSHRASQNSMGSAAADTLAESPHPR
GSNFMGDSGHDGTGTHGCHRSVSELTAFRPGAPRTPLAMWSDVRCPECAY
QMLDEEVLAKMSHVYLEEADLCVQCPKCDESFYPTLEFRVLVGVEDIEGH
TAAATAAAAA
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mRNA from alignment at P-wetherbeei_contig183:1767..2884+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig183.1.1 ID=mRNA_P-wetherbeei_contig183.1.1|Name=mRNA_P-wetherbeei_contig183.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1118bp|location=Sequence derived from alignment at P-wetherbeei_contig183:1767..2884+ (Phaeothamnion wetherbeei SAG_119_79)
GCCGCCGCCGCCGCCGCGGCAGCGGCGGCGGTGGACGACCCCACGGCGGG
CGGCGTCGTGGTGAAGCGCACCAGCGTCAACCTCAGCGGAAACGTCCGGG
CGCGGCAGCTGTGGTTCCGGGCGCGGGGCACCATCGCCAACGGAAAGGGC
CATCTGGGCGCAGTCGACACTGTCAGCGGGATCGAAGAGATCGCCAGCGC
CCTTCGCGCTGCCGGTAACGACGCCGATGTCGGTGGCGGCAGCGGCGGCG
GCGGTGGCGGCGGCAATGGCCACGGCCATGGTTGTGGCATTCACCATGGT
GGCGGCGGCGGCGGCGGCGGCGGCATCGATGGTGAACACGAAGACGGCGA
CAGCGGCAGGCATGTTCCCGGCAGGCTCAGCCACCGCGCCTCCCAGAACT
CCATGGGCAGCGCCGCGGCCGACACGCTTGCGGAGAGCCCACACCCCCGG
GGAAGCAACTTCATGGGCGACAGCGGCCACGACGGCACCGGAACCCACGG
CTGCCACCGCAGCGTCAGCGAGCTGACGGCGTTCCGCCCCGGCGCCCCGC
GGACGCCGCTGGCGATGTGGAGTGACGTGCGGTGCCCCGAGTGCGCCTAC
CAGGTGGGTCGGCCGTTTTTCAGTCACACATGTGCCCGTTTTGATTTGTT
GACATAACTTTGTTTGCTTGAAGACCTTACGCTGCTTTCTGGAAAAACCT
TCGGATCCGCCAATCTACAATCAGATGCTGGACGAGGAGGTGCTGGCCAA
GATGTCTCACGTCTACCTGGAAGAAGCCGACCTATGTGTGAGTCGATGCG
CCTATAGCACCTTTCTTTTCTTGAAACGGTGTTCTGAATAGGCAACCAGT
AGTCTGGATAAGTTTCCTAAGCTTCGTTTGCAAAGTTTTGAATTGCTCAG
TGATCATAAGTAATGGGTCTCTTGGCTTAGCTCGAACTAAGGTCACTTCT
AAGCAACTTTGTTATCACCGCCGCACCGAATCGTCTGTTCCCAACAAAAC
AGGTCCAGTGCCCGAAATGCGACGAGTCGTTCTACCCGACGCTCGAATTC
CGGGTGCTGGTCGGAGTGGAGGACATCGAAGGCCACACGGCTGCCGCCAC
TGCCGCTGCCGCCGCCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig183:1767..2884+

>mRNA_P-wetherbeei_contig183.1.1 ID=mRNA_P-wetherbeei_contig183.1.1|Name=mRNA_P-wetherbeei_contig183.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=780bp|location=Sequence derived from alignment at P-wetherbeei_contig183:1767..2884+ (Phaeothamnion wetherbeei SAG_119_79)
GCCGCCGCCGCCGCCGCGGCAGCGGCGGCGGTGGACGACCCCACGGCGGG
CGGCGTCGTGGTGAAGCGCACCAGCGTCAACCTCAGCGGAAACGTCCGGG
CGCGGCAGCTGTGGTTCCGGGCGCGGGGCACCATCGCCAACGGAAAGGGC
CATCTGGGCGCAGTCGACACTGTCAGCGGGATCGAAGAGATCGCCAGCGC
CCTTCGCGCTGCCGGTAACGACGCCGATGTCGGTGGCGGCAGCGGCGGCG
GCGGTGGCGGCGGCAATGGCCACGGCCATGGTTGTGGCATTCACCATGGT
GGCGGCGGCGGCGGCGGCGGCGGCATCGATGGTGAACACGAAGACGGCGA
CAGCGGCAGGCATGTTCCCGGCAGGCTCAGCCACCGCGCCTCCCAGAACT
CCATGGGCAGCGCCGCGGCCGACACGCTTGCGGAGAGCCCACACCCCCGG
GGAAGCAACTTCATGGGCGACAGCGGCCACGACGGCACCGGAACCCACGG
CTGCCACCGCAGCGTCAGCGAGCTGACGGCGTTCCGCCCCGGCGCCCCGC
GGACGCCGCTGGCGATGTGGAGTGACGTGCGGTGCCCCGAGTGCGCCTAC
CAGATGCTGGACGAGGAGGTGCTGGCCAAGATGTCTCACGTCTACCTGGA
AGAAGCCGACCTATGTGTCCAGTGCCCGAAATGCGACGAGTCGTTCTACC
CGACGCTCGAATTCCGGGTGCTGGTCGGAGTGGAGGACATCGAAGGCCAC
ACGGCTGCCGCCACTGCCGCTGCCGCCGCC
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