mRNA_P-wetherbeei_contig18252.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18252.1.1
Unique NamemRNA_P-wetherbeei_contig18252.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig18252.1.1 vs. uniprot
Match: A0A1F6PJL1_9BACT (Uncharacterized protein n=1 Tax=Candidatus Melainabacteria bacterium GWA2_34_9 TaxID=1801604 RepID=A0A1F6PJL1_9BACT)

HSP 1 Score: 68.2 bits (165), Expect = 2.440e-10
Identity = 53/160 (33.12%), Postives = 74/160 (46.25%), Query Frame = 1 
Query:   46 EYFHSARQLIENAKSGDRIALQMYEFENGATNGDKD----AAKAAPGYADQQALLGDLTDAAKRGVDVDVVLDGSKHP------KTKQLLNGPIVDALRQAAQQTGHITLDIYPANT---VNIDHAKELLYMTPANGGYAVQTALVGGSNWGNHTPANDD 486
            + F  A + +E  K GD I ++M+EF+N   + DK      A A  G  +QQ L   +   +K GV V  +LD SK P      K K   N  +V  L  A      + + IYP +T     I H K L   + + G       ++GG NWGNH+P N D
Sbjct:  109 QIFPKALEWVEGTKKGDCIQIEMFEFQN-KDDADKHHPLGGADAVDGSKEQQKLYDTIIKKSKEGVKVQTILDASKWPEDGFGRKEKFYNNLNMVKRLIDAG-----VDVAIYPRSTQGGTKIQHVKLLAIHSKSTG----NKVMIGGENWGNHSPVNHD 258
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BLAST of mRNA_P-wetherbeei_contig18252.1.1 vs. uniprot
Match: A0A1F6SCC0_9BACT (Uncharacterized protein n=2 Tax=unclassified Candidatus Melainabacteria TaxID=1897007 RepID=A0A1F6SCC0_9BACT)

HSP 1 Score: 60.5 bits (145), Expect = 1.140e-7
Identity = 54/174 (31.03%), Postives = 83/174 (47.70%), Query Frame = 1 
Query:    1 IAGQLKSPVFLGTEQEYFHSARQLIENAKSGDRIALQMYEFENGATNGD---KDAAKAAPGYADQQALLGDLTDAAKRG---VDVDVVLDG------SKHPKTKQLLNGPIVDALRQAAQQTGHITLDIYPANTVNIDHAKELLYMTPANGGYAVQTALVGGSNWGNHTPANDD 486
            I G  K    +G++Q  F     LI+NA++ D I ++M+EF+N   +GD    + A+   G+  QQ +L DL    K+G   + + V+LD       SK    +   N  +++ LR          +D  PA   +   +K       A GG  V   ++GG NWGNH+PAN D
Sbjct:   98 IVGNTKVTTLIGSKQ-IFDETINLIKNARNNDDIQIKMFEFQNLKIDGDIWASNGAETVAGWKKQQEIL-DLLVKKKKGNPNLKIQVILDDHKWYEDSKGKPLRHYNNQKMIEHLRDN-------NIDAVPAPMSHQGGSKLQHDKLIAVGGRKV---IIGGMNWGNHSPANHD 259
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BLAST of mRNA_P-wetherbeei_contig18252.1.1 vs. uniprot
Match: A0A1F6Q063_9BACT (Uncharacterized protein n=1 Tax=Candidatus Melainabacteria bacterium GWF2_32_7 TaxID=1801605 RepID=A0A1F6Q063_9BACT)

HSP 1 Score: 52.0 bits (123), Expect = 9.560e-5
Identity = 54/178 (30.34%), Postives = 81/178 (45.51%), Query Frame = 1 
Query:    1 IAGQLKSPVFLGTEQEYFHSARQLIENAKSGDRIALQMYEFENGATNGD---KDAAKAAPGYADQQALLGDLTDAAKRG---VDVDVVLDGSKHPKTKQLLNGPIVDALRQAAQQT-------GHITLDIYPA---NTVNIDHAKELLYMTPANGGYAVQTALVGGSNWGNHTPANDD 486
            I G  K    +G++Q  F     LIENAK+   I ++M+EF+N   +G+    + A+   G+  QQ +L DL    K+G   + + V+LD  K  +  Q       +ALR    Q         +I +  YP       N+ H K L   +        +  L+GG NWG H+PAN D
Sbjct:   98 IVGNTKVTTLIGSKQ-IFDKTINLIENAKNN--IQIEMFEFQNLKIDGNVWASNGAETVAGWKKQQEIL-DLLVKKKKGKPNLKIQVILDVHKWYEDSQ------GNALRHYNNQRMIKYLKDNNIDVVPYPKAHQGGTNLQHVKFLAVDS--------KKVLLGGMNWGTHSPANHD 257
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18252.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A1F6PJL1_9BACT2.440e-1033.13Uncharacterized protein n=1 Tax=Candidatus Melaina... [more]
A0A1F6SCC0_9BACT1.140e-731.03Uncharacterized protein n=2 Tax=unclassified Candi... [more]
A0A1F6Q063_9BACT9.560e-530.34Uncharacterized protein n=1 Tax=Candidatus Melaina... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18252contigP-wetherbeei_contig18252:162..647 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size486
Hectar predicted targeting categoryother localisation
Exons1
Cds size486
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186140.989225-CDS-P-wetherbeei_contig18252:161..6471683186140.989225-CDS-P-wetherbeei_contig18252:161..647Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18252 162..647 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18252.1.1prot_P-wetherbeei_contig18252.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18252 162..647 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18252.1.1

>prot_P-wetherbeei_contig18252.1.1 ID=prot_P-wetherbeei_contig18252.1.1|Name=mRNA_P-wetherbeei_contig18252.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=162bp
IAGQLKSPVFLGTEQEYFHSARQLIENAKSGDRIALQMYEFENGATNGDK
DAAKAAPGYADQQALLGDLTDAAKRGVDVDVVLDGSKHPKTKQLLNGPIV
DALRQAAQQTGHITLDIYPANTVNIDHAKELLYMTPANGGYAVQTALVGG
SNWGNHTPANDD
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mRNA from alignment at P-wetherbeei_contig18252:162..647-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18252.1.1 ID=mRNA_P-wetherbeei_contig18252.1.1|Name=mRNA_P-wetherbeei_contig18252.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=486bp|location=Sequence derived from alignment at P-wetherbeei_contig18252:162..647- (Phaeothamnion wetherbeei SAG_119_79)
ATCGCCGGACAGCTCAAGAGCCCGGTATTTCTGGGCACCGAACAGGAGTA
TTTCCACAGCGCCCGCCAACTCATCGAGAATGCCAAAAGCGGCGACCGCA
TCGCGCTCCAGATGTATGAATTCGAAAACGGCGCCACCAACGGTGACAAA
GATGCGGCCAAGGCCGCTCCCGGATACGCGGACCAGCAGGCGCTTCTCGG
CGACCTCACCGATGCAGCCAAACGTGGCGTAGACGTCGATGTCGTTTTGG
ACGGCTCCAAGCATCCCAAAACCAAACAGCTGCTCAACGGCCCCATCGTC
GATGCTCTTAGGCAGGCGGCTCAACAGACCGGTCACATCACGCTCGACAT
CTATCCCGCCAACACTGTGAACATCGATCACGCCAAAGAACTTCTTTATA
TGACTCCCGCCAACGGCGGATACGCTGTCCAAACAGCTCTTGTGGGTGGC
AGCAATTGGGGCAATCACACGCCCGCTAACGACGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18252:162..647-

>mRNA_P-wetherbeei_contig18252.1.1 ID=mRNA_P-wetherbeei_contig18252.1.1|Name=mRNA_P-wetherbeei_contig18252.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=486bp|location=Sequence derived from alignment at P-wetherbeei_contig18252:162..647- (Phaeothamnion wetherbeei SAG_119_79)
ATCGCCGGACAGCTCAAGAGCCCGGTATTTCTGGGCACCGAACAGGAGTA
TTTCCACAGCGCCCGCCAACTCATCGAGAATGCCAAAAGCGGCGACCGCA
TCGCGCTCCAGATGTATGAATTCGAAAACGGCGCCACCAACGGTGACAAA
GATGCGGCCAAGGCCGCTCCCGGATACGCGGACCAGCAGGCGCTTCTCGG
CGACCTCACCGATGCAGCCAAACGTGGCGTAGACGTCGATGTCGTTTTGG
ACGGCTCCAAGCATCCCAAAACCAAACAGCTGCTCAACGGCCCCATCGTC
GATGCTCTTAGGCAGGCGGCTCAACAGACCGGTCACATCACGCTCGACAT
CTATCCCGCCAACACTGTGAACATCGATCACGCCAAAGAACTTCTTTATA
TGACTCCCGCCAACGGCGGATACGCTGTCCAAACAGCTCTTGTGGGTGGC
AGCAATTGGGGCAATCACACGCCCGCTAACGACGAC
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