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Homology
BLAST of mRNA_P-wetherbeei_contig1825.1.2 vs. uniprot
Match: A0A6H5JBS2_9PHAE (SAM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JBS2_9PHAE) HSP 1 Score: 171 bits (433), Expect = 5.800e-40 Identity = 119/276 (43.12%), Postives = 152/276 (55.07%), Query Frame = 1
Query: 1 GQAARLVEALPPAVRKSFEGIFDPETDRAVMEDRALMELLAKVPEDQALASLGKYRTAMNNRGPESIKNKQGYLISFLKQYQDTSATSALALAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTAAANASGRGPWRPISVLRPAVRMQLEKVFDPVKDRVVLEDVGLMKQLARLEEGRALTAIQNYKEQAAKDRGGHEIKNKSAYLMGILRGFIEGTTPISRS---GGGS 819
G A RL+E L P V ++ +G+FDP DR V EDRALMELLAKVPE+QALA+L KYR + RG ++I+N+ GYLI FLKQYQD + + + XXXXX N+SG RPI+ L+ VR +LEK+F+ KD+ VLEDVGL+KQL+RL E +AL A++NYKE A+K R +I NKSAYLMGILRG+IEGTTPIS++ GGG+
Sbjct: 118 GSAQRLLERLSPPVSQAVQGVFDPVLDRCVYEDRALMELLAKVPEEQALAALKKYRATVQRRGRDAIENRCGYLIGFLKQYQD--GVAIVGVPGNAVHQARNALESSSNGYGQHLTNGSAGQSSSSATNGHNPNANGARNGAMNGAGGGPSATATSSSQGTGAXXXXXXXXXXNSSGV---RPITYLQAPVRKELEKLFESGKDKTVLEDVGLIKQLSRLGEEQALAALKNYKE-ASKHR--RDIHNKSAYLMGILRGYIEGTTPISKAPWEGGGN 385
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 1 |
| Model size | 3482 |
| Hectar predicted targeting category | other localisation |
| Exons | 6 |
| Cds size | 2286 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1683186140.7886794-UTR-P-wetherbeei_contig1825:93..183 | 1683186140.7886794-UTR-P-wetherbeei_contig1825:93..183 | Phaeothamnion wetherbeei SAG_119_79 | UTR | P-wetherbeei_contig1825 94..183 + |
| 1683186140.844282-UTR-P-wetherbeei_contig1825:3755..4861 | 1683186140.844282-UTR-P-wetherbeei_contig1825:3755..4861 | Phaeothamnion wetherbeei SAG_119_79 | UTR | P-wetherbeei_contig1825 3756..4861 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1683186140.7989101-CDS-P-wetherbeei_contig1825:183..234 | 1683186140.7989101-CDS-P-wetherbeei_contig1825:183..234 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig1825 184..234 + |
| 1683186140.806964-CDS-P-wetherbeei_contig1825:606..832 | 1683186140.806964-CDS-P-wetherbeei_contig1825:606..832 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig1825 607..832 + |
| 1683186140.814603-CDS-P-wetherbeei_contig1825:871..1095 | 1683186140.814603-CDS-P-wetherbeei_contig1825:871..1095 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig1825 872..1095 + |
| 1683186140.821994-CDS-P-wetherbeei_contig1825:1428..1539 | 1683186140.821994-CDS-P-wetherbeei_contig1825:1428..1539 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig1825 1429..1539 + |
| 1683186140.8295019-CDS-P-wetherbeei_contig1825:1875..3402 | 1683186140.8295019-CDS-P-wetherbeei_contig1825:1875..3402 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig1825 1876..3402 + |
| 1683186140.8370063-CDS-P-wetherbeei_contig1825:3608..3755 | 1683186140.8370063-CDS-P-wetherbeei_contig1825:3608..3755 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig1825 3609..3755 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig1825.1.2 >prot_P-wetherbeei_contig1825.1.2 ID=prot_P-wetherbeei_contig1825.1.2|Name=mRNA_P-wetherbeei_contig1825.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=762bp
MEDRALMELLAKVPEDQALASLGKYRTAMNNRGPESIKNKQGYLISFLKQ
YQDTSATSALALAAAAHAAATAAAAAGGGMTNDAKAAAAGGGGAAASNGH
AVGSGAHNGGSSHGGTSGTHHRKTGSGGGGGGGGGGGAGTAAANASGRGP
WRPISVLRPAVRMQLEKVFDPVKDRVVLEDVGLMKQLARLEEGRALTAIQ
NYKEQAAKDRGGHEIKNKSAYLMGILRGFIEGTTPISRSGGGSGGEDGGG
SDGGGGEANDESAPAGDKPALATSDCCVGGAGASSGKGKGTHAEKPGLSR
SGGKAVAAAGSTAAPPNQPTNAGTASGEANAPASNGGASNGAMMNGRCGS
SGGGRSGAGTGSSAANGADSSAGMDVHFAPAVSGSSATAAATTPPPLLRP
HAPPAMAAASALSTFGGWSPFQAPASVGAGAVGAASAAAPHSPLDVLGNG
FAGGIGSGGGVASATPPPGDDALGPFHLEHIGFESGSGAGRQSPMMPEYA
AAVATTTAAPTPVRLSPVESLFGSNGFSKGSGGGGDGGGSGGGSGMVGPG
LLGGDIVLSPPMASPSPLPPLSSFGLAPGAATCGAPSSLLGGGGGMASAG
AVGSPPSPNDPASISLLAAATGLPGIEALGQAAMAAPPRAQSEYGCSPGL
FAMAPVATAMGMDGSGGGENGSLGGVGGGGGAAGGGGCLVLPEESMLQLL
QRMSLQRYQGVMEAIPLCFAHSLFRAPSYGPAAGRRGGHGGAAPHERRGP
GAARHPQRPAR* back to topmRNA from alignment at P-wetherbeei_contig1825:94..4861+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-wetherbeei_contig1825.1.2 ID=mRNA_P-wetherbeei_contig1825.1.2|Name=mRNA_P-wetherbeei_contig1825.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=4768bp|location=Sequence derived from alignment at P-wetherbeei_contig1825:94..4861+ (Phaeothamnion wetherbeei SAG_119_79)
GGGCAGGCGGCGCGGCTGGTGGAGGCGCTGCCGCCAGCCGTCCGCAAGAG
CTTCGAAGGGATCTTCGACCCAGAGACAGACCGCGCGGTGATGGAGGACC
GTGCACTGATGGAGCTTCTGGCCAAGGTGCCCGAAGACCAGGTCTGTCCA
ATTAAGCTCGAACCCCAGGCGTATCATCGGCGCGCGCAGTACAATCGCCG
TTTCTTTCCTCCTGTCGGCGGCTTGTTCTCTTTTCCCATTGCCTCTGCCG
GTGCCAGAGGCAGGAGGCCACATATCTTTTCGTGTGGCAACAGTTCTGAC
AGGCGTTGCATTCAAGCATGCAAGTCTCACGACGCTCTCAGGAATTTAAG
GGCCGCGCTGCGGTGGCAGCGCACGCGAATCCTGAAACACATTTGACGGC
GCCCCAGGCGCGTGGCTCTCTCTCTCTTCTCTTCTGTGCTGCTGCTTCCT
GCTGCCGCCTGCTGCCTTCTGCTGACTCCACCGTTTCCTGCCTGCCTCGC
TGCCCGCCTTCAGGCGCTGGCGTCGCTGGGCAAGTACCGCACAGCGATGA
ACAACCGTGGTCCCGAGTCCATCAAGAACAAGCAGGGCTACCTCATCTCC
TTCCTGAAGCAGTACCAGGACACCAGCGCCACGAGCGCCCTGGCCCTCGC
CGCCGCCGCCCACGCGGCCGCGACCGCCGCCGCGGCGGCGGGCGGCGGGA
TGACGAACGATGCGAAAGCGGCGGCGGCTGGCGGCGGTGGTGGCGGCGGC
GCCGGTTGCAGCGGCAGCGGGGGCGGAGGCGCGGCCGCCAGCAACGGCCA
CGCTGTCGGAAGCGGTGCTCACAATGGCGGTAGCAGCCATGGTGGAACGA
GTGGCACACACCACCGTAAGACCGGCAGCGGCGGCGGCGGCGGCGGCGGC
GGCGGCGGCGGTGCTGGCACTGCCGCAGCGAACGCGTCGGGGCGCGGCCC
GTGGCGGCCGATCTCGGTGCTGCGACCGGCCGTGCGAATGCAACTCGAAA
AGGTAAGATCCGTGGCGGGATTTTGGTCTCCTTACTCGTTGCAGTGGCAG
TAACTGGCGGCATATTGACCTCGCTCGGCTTTGCTTCTGAAGTGCATCTC
TTTTGCCTGTGCTGTTCTGCTTTTGGAGTCGCCATTACGTGAATTGCGCT
GACCTTTTCTCGTATTTGGTCCGTTGTAGGCGTTCGCGAGGGTTTCCTAT
TCTCACCGTCGTGTGCCATCTATGACCGGTGACGATCTCGCGCTGTTCTT
TTCCCGTTCCCGCGGGTCGTGTTCTGCTTCTTTCTATTTTGCCTTTCGGT
CGTCGCACTGTGTTTGATGTGTTGGTTGGGTTCAGGTGTTTGACCCGGTG
AAGGACCGGGTGGTGCTCGAGGATGTGGGGCTGATGAAGCAGCTGGCGCG
CCTCGAGGAGGGGCGCGCTCTCACCGCCATCCAGAACTACAAGGAGGTGA
GGGGGCGAGGATGGCGATTCTGGGCGGCTGGGTTCATTTCAGTCCAGATT
TTTTATGCAGAGGTTCCAACTCTAGAAGTTGCGTCCTGTGGGCTCGCTCT
GCCATATCCGCGCGCTCGTTGCGCCGTCCGTGACCGCGGGGCTGCTGTGG
TGCATCGAATACTGTTGGACGGACTGCAAGCTGCAGCCATTGTCGGTCAC
AGTCAGAGCATGTTGGCATATGCATGGGGGTCGGCAGTGTGGCAACATCG
TCGTCGTTACCAAATCGGGTCAGTTCTGACCTGGCTTTTTCGGCCGGCTG
CTCTTCCTGCTATCTGCTCCGGGTCCTTGCAGCAAGCGGCCAAGGACCGC
GGCGGGCACGAGATCAAGAACAAGAGCGCTTATTTGATGGGAATTTTGCG
CGGGTTCATTGAGGGGACGACGCCCATTTCGCGCAGTGGCGGCGGTAGCG
GCGGCGAAGACGGTGGCGGCAGCGATGGCGGCGGTGGCGAAGCGAACGAT
GAAAGCGCCCCTGCTGGGGACAAGCCCGCGCTCGCCACGAGCGATTGCTG
CGTCGGCGGTGCTGGCGCCAGCAGCGGCAAGGGCAAGGGCACCCATGCCG
AAAAGCCGGGGTTGAGCAGAAGCGGCGGCAAGGCCGTTGCTGCCGCCGGT
AGCACTGCTGCACCGCCGAACCAACCAACAAACGCCGGCACTGCAAGCGG
CGAAGCGAACGCCCCTGCGAGCAATGGAGGCGCGAGCAACGGCGCCATGA
TGAACGGCCGATGCGGCAGTAGCGGCGGCGGTAGAAGCGGTGCTGGCACC
GGCAGCAGTGCTGCCAACGGCGCTGATTCTTCGGCGGGAATGGACGTTCA
TTTTGCGCCGGCGGTGTCGGGGTCGTCGGCGACGGCCGCGGCCACCACGC
CGCCGCCGCTGCTGCGACCGCACGCGCCGCCGGCGATGGCAGCCGCGTCA
GCCCTTTCGACCTTCGGCGGTTGGTCGCCGTTCCAAGCGCCGGCCTCGGT
CGGGGCAGGAGCCGTAGGTGCGGCGTCAGCGGCGGCACCCCACTCGCCGT
TGGATGTGCTCGGGAACGGCTTCGCGGGCGGGATCGGAAGCGGCGGCGGC
GTCGCGTCGGCAACGCCGCCGCCGGGCGACGACGCGCTCGGGCCGTTCCA
TCTGGAGCACATCGGCTTCGAATCGGGCAGCGGGGCGGGGCGGCAGTCAC
CGATGATGCCGGAGTATGCAGCTGCCGTCGCCACCACCACAGCCGCGCCG
ACGCCGGTGCGTCTGTCGCCCGTCGAGTCGCTCTTCGGGTCGAACGGCTT
TTCGAAGGGCAGCGGCGGCGGCGGCGATGGCGGCGGGAGCGGCGGCGGCA
GTGGCATGGTCGGGCCAGGACTGCTCGGAGGAGACATTGTTCTCTCCCCT
CCGATGGCGTCGCCGTCTCCGCTGCCGCCGTTGTCGTCTTTCGGGCTCGC
TCCGGGCGCTGCCACTTGCGGCGCGCCGTCGTCGCTGCTCGGCGGGGGCG
GCGGGATGGCATCGGCGGGCGCCGTCGGCTCGCCGCCATCGCCGAACGAT
CCCGCGTCCATCTCGCTGCTGGCGGCGGCGACGGGCCTCCCGGGCATCGA
GGCGCTCGGCCAGGCGGCGATGGCGGCGCCACCGCGCGCCCAGAGCGAGT
ACGGATGCTCTCCCGGGCTCTTTGCCATGGCGCCGGTGGCCACGGCCATG
GGGATGGATGGCAGCGGCGGAGGCGAAAACGGCAGCCTGGGCGGCGTCGG
CGGCGGTGGTGGTGCTGCCGGCGGCGGCGGATGCCTGGTGCTCCCGGAGG
AATCGATGCTTCAGCTGCTGCAGCGGATGAGCCTCCAGCGCTACCAAGGG
GTCATGGAGGTGCGTTTCCCTTTTTTTCTGCTCGTTGTCTTATTTGCAGA
GTGAAAAAGCTTAGCGAAACCGGTGTATCAGTATTGACGGCGCAGCAGCT
ACCAATGCCATAGGGTCAAAAGGAACTGGGGCTTGATGAGAACCAAGAGC
TGTGGAGCCAACCTCGCGCTCTGTTTTTGTACCCTTCCCGGCCACTGCTC
CTCCCTCTCTGACAGGCCATCCCGTTGTGTTTCGCTCATTCTCTGTTCCG
CGCACCATCATATGGTCCTGCCGCAGGCCGCCGAGGTGGACATGGAGGCG
CTGCGCCTCATGAACGAAGAGGACCTGGCGCAGCTCGGCATCCCCAAAGG
CCCGCGCGTTAAAATGCTCCGCGGCGCCGGCGCCATTTGAACGGGGAAAA
GAGCGCGGATGGGAGACCTGGCTGCTCGACAGAGCTGAGGCGGCGCGGCG
GGGAAGAGCTGCGCTGCGGGCGGCGGTGGTGGCCACCGGCATGGGACGTA
GCAATCGGGGTCGCCGCGGCCGTCCGGCTTGGCGGTTGGGCTTGGGGGCT
TGCACAGGAATCCCGCCTCGTCTCGGCGCTGCAGCGCTTTTGCGAAACAC
TTCTTTGACCCACCCCGTAATGCTGGATCGACGCGCCGCGTCCGGAGGTG
CCGAGATCGCCGCCGCTGCCGGCGTTTTGGCGTCCGGCGGCGGTGTGTGC
AGTCAGTCGGGGCTTTCCATGAAGCGACCGCTTGCGACGCCAGCATGGTG
CACTGGCAAGGAAGCCAGGCCGCGGGAACGACATACCGTTAGGTAATTTT
GCGTGGCGGCAAGGCGAACGCCGTAAGGAAAATAGCACCTTACGTGTCTA
ACAGCTGATGGCGTCAGCCAGGGATGGCAGCGGTGACGGCGGCCGCAGCA
TCAGCAAGAATGTGGCTCACACTTCGGCGTTGTGTCGGCATCACTCGTTG
GTGTTGCGGTTGCATGGTGGCACTCTTGCCGTGGCACCGGTTAGTGCCGC
GCTAGCGGCGCCGCTCAAGCGGTGGCCGTCCGGCGCCCCTGCAGCGCGTC
GATGCCTACTCACGGCGGCGGCAGCTGCAACGATGGAAAAGCGCAGGAGA
GATGGGGGCGGAGGCTGGCTGAGCCGGGACGGGGCGGTCGGCCCAGACCG
GACCGGGCTGGGACAAAGCCGCGGTACGACTGTGGCCGGGGTTCGCCCGG
CCTGCCGGAGGAAAAACCGGAACGGGTGGCCACGGGGACCATTTGCACTG
CGTTCACATCGAGAGGGGGAAAAAGAGAATCTCACCAACACACTTGCTGG
GGGCGGGAGACGGAGGAAGCTATCGGCTGGGCCCACGCCGGCCGCGCGCT
GCGCGGCTGGAACGCGCCAGGCGGCCGGCGGCGGCAGGGGCTGCCACTCC
GTCTCGAGTGTGGGAGTGAGTCACATTAAAAAATCAGAAACCCCCATGCC
AACGGAAAGAAACTGCGG back to topCoding sequence (CDS) from alignment at P-wetherbeei_contig1825:94..4861+ >mRNA_P-wetherbeei_contig1825.1.2 ID=mRNA_P-wetherbeei_contig1825.1.2|Name=mRNA_P-wetherbeei_contig1825.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2286bp|location=Sequence derived from alignment at P-wetherbeei_contig1825:94..4861+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGGACCGTGCACTGATGGAGCTTCTGGCCAAGGTGCCCGAAGACCA
GGCGCTGGCGTCGCTGGGCAAGTACCGCACAGCGATGAACAACCGTGGTC
CCGAGTCCATCAAGAACAAGCAGGGCTACCTCATCTCCTTCCTGAAGCAG
TACCAGGACACCAGCGCCACGAGCGCCCTGGCCCTCGCCGCCGCCGCCCA
CGCGGCCGCGACCGCCGCCGCGGCGGCGGGCGGCGGGATGACGAACGATG
CGAAAGCGGCGGCGGCTGGCGGCGGTGGCGCGGCCGCCAGCAACGGCCAC
GCTGTCGGAAGCGGTGCTCACAATGGCGGTAGCAGCCATGGTGGAACGAG
TGGCACACACCACCGTAAGACCGGCAGCGGCGGCGGCGGCGGCGGCGGCG
GCGGCGGCGGTGCTGGCACTGCCGCAGCGAACGCGTCGGGGCGCGGCCCG
TGGCGGCCGATCTCGGTGCTGCGACCGGCCGTGCGAATGCAACTCGAAAA
GGTGTTTGACCCGGTGAAGGACCGGGTGGTGCTCGAGGATGTGGGGCTGA
TGAAGCAGCTGGCGCGCCTCGAGGAGGGGCGCGCTCTCACCGCCATCCAG
AACTACAAGGAGCAAGCGGCCAAGGACCGCGGCGGGCACGAGATCAAGAA
CAAGAGCGCTTATTTGATGGGAATTTTGCGCGGGTTCATTGAGGGGACGA
CGCCCATTTCGCGCAGTGGCGGCGGTAGCGGCGGCGAAGACGGTGGCGGC
AGCGATGGCGGCGGTGGCGAAGCGAACGATGAAAGCGCCCCTGCTGGGGA
CAAGCCCGCGCTCGCCACGAGCGATTGCTGCGTCGGCGGTGCTGGCGCCA
GCAGCGGCAAGGGCAAGGGCACCCATGCCGAAAAGCCGGGGTTGAGCAGA
AGCGGCGGCAAGGCCGTTGCTGCCGCCGGTAGCACTGCTGCACCGCCGAA
CCAACCAACAAACGCCGGCACTGCAAGCGGCGAAGCGAACGCCCCTGCGA
GCAATGGAGGCGCGAGCAACGGCGCCATGATGAACGGCCGATGCGGCAGT
AGCGGCGGCGGTAGAAGCGGTGCTGGCACCGGCAGCAGTGCTGCCAACGG
CGCTGATTCTTCGGCGGGAATGGACGTTCATTTTGCGCCGGCGGTGTCGG
GGTCGTCGGCGACGGCCGCGGCCACCACGCCGCCGCCGCTGCTGCGACCG
CACGCGCCGCCGGCGATGGCAGCCGCGTCAGCCCTTTCGACCTTCGGCGG
TTGGTCGCCGTTCCAAGCGCCGGCCTCGGTCGGGGCAGGAGCCGTAGGTG
CGGCGTCAGCGGCGGCACCCCACTCGCCGTTGGATGTGCTCGGGAACGGC
TTCGCGGGCGGGATCGGAAGCGGCGGCGGCGTCGCGTCGGCAACGCCGCC
GCCGGGCGACGACGCGCTCGGGCCGTTCCATCTGGAGCACATCGGCTTCG
AATCGGGCAGCGGGGCGGGGCGGCAGTCACCGATGATGCCGGAGTATGCA
GCTGCCGTCGCCACCACCACAGCCGCGCCGACGCCGGTGCGTCTGTCGCC
CGTCGAGTCGCTCTTCGGGTCGAACGGCTTTTCGAAGGGCAGCGGCGGCG
GCGGCGATGGCGGCGGGAGCGGCGGCGGCAGTGGCATGGTCGGGCCAGGA
CTGCTCGGAGGAGACATTGTTCTCTCCCCTCCGATGGCGTCGCCGTCTCC
GCTGCCGCCGTTGTCGTCTTTCGGGCTCGCTCCGGGCGCTGCCACTTGCG
GCGCGCCGTCGTCGCTGCTCGGCGGGGGCGGCGGGATGGCATCGGCGGGC
GCCGTCGGCTCGCCGCCATCGCCGAACGATCCCGCGTCCATCTCGCTGCT
GGCGGCGGCGACGGGCCTCCCGGGCATCGAGGCGCTCGGCCAGGCGGCGA
TGGCGGCGCCACCGCGCGCCCAGAGCGAGTACGGATGCTCTCCCGGGCTC
TTTGCCATGGCGCCGGTGGCCACGGCCATGGGGATGGATGGCAGCGGCGG
AGGCGAAAACGGCAGCCTGGGCGGCGTCGGCGGCGGTGGTGGTGCTGCCG
GCGGCGGCGGATGCCTGGTGCTCCCGGAGGAATCGATGCTTCAGCTGCTG
CAGCGGATGAGCCTCCAGCGCTACCAAGGGGTCATGGAGGCCATCCCGTT
GTGTTTCGCTCATTCTCTGTTCCGCGCACCATCATATGGTCCTGCCGCAG
GCCGCCGAGGTGGACATGGAGGCGCTGCGCCTCATGAACGAAGAGGACCT
GGCGCAGCTCGGCATCCCCAAAGGCCCGCGCGTTAA back to top
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