mRNA_P-wetherbeei_contig18238.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18238.4.1
Unique NamemRNA_P-wetherbeei_contig18238.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig18238.4.1 vs. uniprot
Match: A0A841HEB5_9GAMM (HipA_C domain-containing protein n=1 Tax=Povalibacter uvarum TaxID=732238 RepID=A0A841HEB5_9GAMM)

HSP 1 Score: 343 bits (879), Expect = 3.240e-113
Identity = 165/279 (59.14%), Postives = 208/279 (74.55%), Query Frame = 1
Query:    1 LLGDVALDQYLAGLRQRSTVTSEERAVRYPQFVTEVLQGDLPGSSAHGEHPKFATLLQDQNVSTPVIVKFSPTLDTQVGQRWGDLLVAEHLAHAQLCAANVPACTSQIHTIANRRFLEVVRFDRSGREGRIGVSSLSAIDTGFYGRLDSWIESAARLHASGFITAETLEQIRLVATFGTLIANTDQHFGNLAFLDRYDGSFALAPIYDMLPMLFAPQHDQIVARTFDPPHPTANTLRAWGRARDMAERYWATLADNTLISEQFRAIAAACFRTLQETAR 837
            +LGD ALDQYL   R R  +   ER  RYPQ  T+VL+G LPGSSAHGEHPKF+TL++D +    VIVKFSP + T VG+RW DLL+AEH+AH  L  A +PA  S++   A+R +LEV RFDR G EGR GV+SL ++D   YG++D+WI SA RL A G I+  TLEQ+RL ATFG LIANTD+HFGNLAF+DRYDG FALAPIYDMLPML+ P+HDQIV R F+PP PT +T++++GRAR++AERYW   A ++ IS +F+AI+ AC   L+   R
Sbjct:  168 ILGDAALDQYLGQQRHRLPIADAERLARYPQLATQVLEGGLPGSSAHGEHPKFSTLIEDASGPKHVIVKFSPIVTTAVGRRWSDLLIAEHIAHEVLGEAGLPAARSRMLQAADRTYLEVDRFDRHGPEGRTGVTSLLSVDASLYGKIDNWISSATRLRADGRISEGTLEQVRLAATFGELIANTDRHFGNLAFIDRYDGEFALAPIYDMLPMLYKPEHDQIVERVFEPPTPTTSTMQSYGRARELAERYWGRCARDSQISAEFQAISTACLGALRALPR 446          
BLAST of mRNA_P-wetherbeei_contig18238.4.1 vs. uniprot
Match: A0A829YF01_9GAMM (Transcriptional regulator n=2 Tax=Steroidobacter agaridevorans TaxID=2695856 RepID=A0A829YF01_9GAMM)

HSP 1 Score: 317 bits (811), Expect = 6.430e-103
Identity = 155/279 (55.56%), Postives = 197/279 (70.61%), Query Frame = 1
Query:    1 LLGDVALDQYLAGLRQRSTVTSEERAVRYPQFVTEVLQGDLPGSSAHGEHPKFATLLQDQNVSTPVIVKFSPTLDTQVGQRWGDLLVAEHLAHAQLCAANVPACTSQIHTIANRRFLEVVRFDRSGREGRIGVSSLSAIDTGFYGRLDSWIESAARLHASGFITAETLEQIRLVATFGTLIANTDQHFGNLAFLDRYDGSFALAPIYDMLPMLFAPQHDQIVARTFDPPHPTANTLRAWGRARDMAERYWATLADNTLISEQFRAIAAACFRTLQETAR 837
            +LG+ AL +YLA + QR  + +  RA  +P+ + + ++G LPGSSAHGEHPKFA  + D      V+VKFSP L   +GQRW DLLVAEHLAH  L +  + AC SQIH   +  +L V RFDR G +GR+GV+SL AID   YG+LD+WI +AARL     I A TLEQ+RL+ATFG LI NTD+HFGNL+F D YDG+F L P YDMLPMLFAP+H+QI+ RTF+P HPTANT+  + RAR +AE+YW T+A +T ISE FR I+A C   L+   R
Sbjct:  167 VLGEPALTEYLATIAQRQPIRN--RAQEFPKLLRDAIEGGLPGSSAHGEHPKFAAFVDDGRGPRHVLVKFSPPLTHPIGQRWSDLLVAEHLAHVVLASDGIAACRSQIHRFDDHTYLVVDRFDRLGNDGRLGVTSLFAIDLDHYGQLDNWIAAAARLLNDRMIDAATLEQVRLLATFGALIGNTDRHFGNLSFFDTYDGTFTLTPSYDMLPMLFAPEHNQIIGRTFEPAHPTANTMVCYARARRLAEQYWRTVASDTRISEDFRGISAQCLAALEALPR 443          
BLAST of mRNA_P-wetherbeei_contig18238.4.1 vs. uniprot
Match: A0A534BB43_9GAMM (HipA_C domain-containing protein n=3 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A534BB43_9GAMM)

HSP 1 Score: 314 bits (804), Expect = 3.870e-102
Identity = 156/279 (55.91%), Postives = 192/279 (68.82%), Query Frame = 1
Query:    1 LLGDVALDQYLAGLRQRSTVTSEERAVRYPQFVTEVLQGDLPGSSAHGEHPKFATLLQDQNVSTPVIVKFSPTLDTQVGQRWGDLLVAEHLAHAQLCAANVPACTSQIHTIANRRFLEVVRFDRSGREGRIGVSSLSAIDTGFYGRLDSWIESAARLHASGFITAETLEQIRLVATFGTLIANTDQHFGNLAFLDRYDGSFALAPIYDMLPMLFAPQHDQIVARTFDPPHPTANTLRAWGRARDMAERYWATLADNTLISEQFRAIAAACFRTLQETAR 837
            +LG  A D YLA  R R+ + ++ER+ ++PQ V +V+ G LPGSSAHGEHPKFA ++QD   +  V+VKFSP++ T VGQRW DLL+AEH AH  L AA + A  S+I  I +R +LEV RFDR G EGR+GVSSL AID   YG LD+WI +  RL     I  + LE+I+LV TFG LIANTD+HFGNLAF D Y G F LAP+YDMLPMLFAP+HDQI+A  F PP PT++TL  W RAR +AE YW  L  +  I   FR IA AC   L+   R
Sbjct:  138 ILGSAAFDDYLALQRARNIIPADERSSQFPQLVDQVMAGGLPGSSAHGEHPKFAIVVQDPGGARHVLVKFSPSIGTAVGQRWSDLLIAEHQAHQVLRAAGIAAADSRIFRIDDRTYLEVDRFDRDGLEGRVGVSSLMAIDANLYGNLDNWIAAGQRLRTDRRIDDKALERIQLVTTFGALIANTDRHFGNLAFYDSYTGRFELAPVYDMLPMLFAPEHDQIIAHMFQPPGPTSDTLLMWPRARALAEGYWRALTGDPRIGADFREIAGACLLALEALPR 416          
BLAST of mRNA_P-wetherbeei_contig18238.4.1 vs. uniprot
Match: UPI000E32101C (type II toxin-antitoxin system HipA family toxin YjjJ n=1 Tax=Steroidobacter cummioxidans TaxID=1803913 RepID=UPI000E32101C)

HSP 1 Score: 313 bits (802), Expect = 1.260e-101
Identity = 151/279 (54.12%), Postives = 196/279 (70.25%), Query Frame = 1
Query:    1 LLGDVALDQYLAGLRQRSTVTSEERAVRYPQFVTEVLQGDLPGSSAHGEHPKFATLLQDQNVSTPVIVKFSPTLDTQVGQRWGDLLVAEHLAHAQLCAANVPACTSQIHTIANRRFLEVVRFDRSGREGRIGVSSLSAIDTGFYGRLDSWIESAARLHASGFITAETLEQIRLVATFGTLIANTDQHFGNLAFLDRYDGSFALAPIYDMLPMLFAPQHDQIVARTFDPPHPTANTLRAWGRARDMAERYWATLADNTLISEQFRAIAAACFRTLQETAR 837
            +LGD AL  YLA L QR  + +  RA+ +P+ +   ++G LPGSSAHGEHPKFA  ++D   +   ++KFSP L   +GQRW DLLVAEH+AH  L +  + AC SQIH   +  +L V RFDR GR+GRIGV+SL AID   YG+LD WI +A RL +   I A TLE +RL+ATFG LI NTD+HFGNLAF D YDG+FAL P YDMLPMLFAP+H+QI+AR F+P  PTA+T+  + RAR +AE+YW T+A +T +S+ FR ++A C   L+   R
Sbjct:  167 VLGDAALTAYLAALAQRQPIRN--RALEFPKLLRVAIEGGLPGSSAHGEHPKFAAFVEDARGARHALIKFSPPLTNPIGQRWSDLLVAEHIAHVVLSSDGIDACRSQIHCFDDHTYLVVDRFDRIGRDGRIGVTSLFAIDLNHYGQLDHWIAAATRLLSDRMIDAATLEHVRLLATFGALIGNTDRHFGNLAFFDTYDGTFALTPSYDMLPMLFAPEHNQIIARRFEPAPPTADTMACYARARRLAEQYWRTIAGDTRVSDDFRRVSAECLAALEALPR 443          
BLAST of mRNA_P-wetherbeei_contig18238.4.1 vs. uniprot
Match: UPI0019C2329B (Type II toxin-antitoxin system HipA family toxin YjjJ n=1 Tax=Steroidobacteraceae bacterium TaxID=2689616 RepID=UPI0019C2329B)

HSP 1 Score: 310 bits (793), Expect = 3.550e-100
Identity = 160/281 (56.94%), Postives = 197/281 (70.11%), Query Frame = 1
Query:    1 LLGDVALDQYLAGLRQRST--VTSEERAVRYPQFVTEVLQGDLPGSSAHGEHPKFATLLQDQNVSTPVIVKFSPTLDTQVGQRWGDLLVAEHLAHAQLCAANVPACTSQIHTIANRRFLEVVRFDRSGREGRIGVSSLSAIDTGFYGRLDSWIESAARLHASGFITAETLEQIRLVATFGTLIANTDQHFGNLAFLDRYDGSFALAPIYDMLPMLFAPQHDQIVARTFDPPHPTANTLRAWGRARDMAERYWATLADNTLISEQFRAIAAACFRTLQETAR 837
            +LGD AL+ +LA  RQ +T  +   ER+ RYPQ   +V+ G  PGSSAHGEHPKF  +L+  +    V+VKFSP   T+VGQRW DLL AEHLAH  L  A V A  S+I   + R FLEV RFDR    GRIGV+SL AID+  YG+LD+WIE+A RL     I A TLE +RL +TFG LIANTD+HFGNLAF DRYDG F+LAPIYDMLPML AP+HDQ++AR F PP P ++TLRA+GRAR++AE YW T A++  IS QFR+I       L++  R
Sbjct:  168 ILGDAALNIHLASHRQDATRALDHAERSERYPQLANDVMTGGFPGSSAHGEHPKFTAVLKQADGFKHVLVKFSPLDSTEVGQRWSDLLTAEHLAHEVLKTAGVNAAESRILKCSGRTFLEVDRFDRKNIAGRIGVTSLFAIDSALYGKLDNWIEAATRLCRDSQIDAATLETVRLGSTFGALIANTDRHFGNLAFYDRYDGKFSLAPIYDMLPMLLAPEHDQVMARVFVPPDPASDTLRAYGRARELAELYWHTCAEDERISMQFRSICQTFLNALEKLPR 448          
BLAST of mRNA_P-wetherbeei_contig18238.4.1 vs. uniprot
Match: A0A534D1W6_9GAMM (Type II toxin-antitoxin system HipA family toxin YjjJ n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A534D1W6_9GAMM)

HSP 1 Score: 261 bits (666), Expect = 4.020e-81
Identity = 132/275 (48.00%), Postives = 167/275 (60.73%), Query Frame = 1
Query:    1 LLGDVALDQYLAGLRQRSTVTSEERAVRYPQFVTEVLQGDLPGSSAHGEHPKFATLLQDQNVSTPVIVKFSPTLDTQVGQRWGDLLVAEHLAHAQLCAANVPACTSQIHTIANRRFLEVVRFDRSGREGRIGVSSLSAIDTGFYGRLDSWIESAARLHASGFITAETLEQIRLVATFGTLIANTDQHFGNLAFLDRYDGSFALAPIYDMLPMLFAPQHDQIVARTFDPPHPTANTLRAWGRARDMAERYWATLADNTLISEQFRAIAAACFRTLQ 825
            ++G  ALD+YLA     + +    R+  YPQ     ++G   GSSAHGE PKF   +   ++ T V+VKFSP  +  +G RW DLL+AEHLAH  L A  + AC S+I     R FLE  RFDR G EGR G  SL A+DT  YGRLD W  SA RL A G ++ E  E IRL+  FG LI NTD+HFGN+   D Y G   LAP+YDMLPMLFAP  +Q++ R F+P  PTA  L  W RA  +AERYW  +A +  I+  FR  +A C  +L+
Sbjct:  166 IVGTEALDRYLATANAPAPIDEGTRSRTYPQLANAAMEGRAGGSSAHGEQPKFTACVASADLRTHVLVKFSPPRNGPLGARWADLLIAEHLAHETLTAEGILACRSEILEAGERIFLETKRFDRIGAEGRRGAVSLFAVDTARYGRLDDWTSSAERLRADGLLSREDAEHIRLIDAFGALIGNTDRHFGNITLFDSYVGYLQLAPVYDMLPMLFAPADEQLIQRVFEPAPPTAAWLSIWPRAYAIAERYWNNVAQDARITAAFREQSARCLESLR 440          
BLAST of mRNA_P-wetherbeei_contig18238.4.1 vs. uniprot
Match: A0A550J3Z1_9DELT (Type II toxin-antitoxin system HipA family toxin YjjJ n=2 Tax=Desulfuromonas acetexigens TaxID=38815 RepID=A0A550J3Z1_9DELT)

HSP 1 Score: 233 bits (593), Expect = 6.090e-70
Identity = 125/278 (44.96%), Postives = 168/278 (60.43%), Query Frame = 1
Query:    1 LLGDVALDQYLAGLRQR-STVTSEERAVRYPQFVTEVLQGDLPGSSAHGEHPKFATLLQDQNVSTPVIVKFSPTLDTQVGQRWGDLLVAEHLAHAQLCAANVPACTSQIHTIANRRFLEVVRFDRSGREGRIGVSSLSAIDTGFYGRLDSWIESAARLHASGFITAETLEQIRLVATFGTLIANTDQHFGNLAFLDRYDGS-FALAPIYDMLPMLFAPQHDQIVARTFDPPHPTANTLRAWGRARDMAERYWATLADNTLISEQFRAIAAACFRTLQE 828
            +LG+++L +Y    R++ + V   E   RY  F    L GD PGSSA GE PKFA LL +      V+VKFSPT DT  G+RW DLL+ E LA  +L +  + A +++IH    R FLEV RFDR GR GR+ + SL+A+D  F+G LD+W  +A RL  SG ++AE  + +RL + F TLIANTDQHFGN++ ++      F+LAP YD+LPML+ P   ++ AR F P  P A     W  AR  A R+WAT A +  IS  FR I +     +QE
Sbjct:  187 ILGELSLQRYFQSAREQPAPVLPPELPARYEAFARAALAGDPPGSSAGGEQPKFAALLAEGEEFRHVLVKFSPTTDTPSGRRWADLLICEQLALEELRSQGLRAASTRIHVTETRTFLEVTRFDRQGRFGRLPLVSLAAVDNEFFGHLDNWPAAAGRLEKSGMLSAEDADALRLFSAFSTLIANTDQHFGNISLVETDSKPRFSLAPAYDVLPMLYRPHQGEVPARAFAPGLPDAAVAGQWESARQAALRFWATAAADARISPDFREICSCNQGMIQE 464          
BLAST of mRNA_P-wetherbeei_contig18238.4.1 vs. uniprot
Match: A0A661PNK2_9DELT (Type II toxin-antitoxin system HipA family toxinoxin YjjJ n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A661PNK2_9DELT)

HSP 1 Score: 219 bits (559), Expect = 3.780e-65
Identity = 122/284 (42.96%), Postives = 169/284 (59.51%), Query Frame = 1
Query:    1 LLGDVALDQYLAGLRQRS-TVTSEERAVRYPQFVTEVLQGDLPGSSAHGEHPKFATLLQDQNVSTPVIVKFSPTLDTQVGQRWGDLLVAEHLAHAQLCAANVPACTSQIHTIANRRFLEVVRFDRSGREGRIGVSSLSAIDTGFYGRLDSWIESAARLHASGFITAETLEQIRLVATFGTLIANTDQHFGNLAFLDRYDGSFALAPIYDMLPMLFAPQHDQIVARTFDPPHPTANTLRAWGRARDMAERYWATLADNTLISEQFRAI---AAACFRTLQETARL 840
            ++GD +L +YL   R+    V S ER   YPQ     ++GD  GSSA GE PKFA +LQ+  ++  V+VKFSP  +T  G+RW DLLV EHLA   +  A + A T++I     R FLEV RFDR GR GR+ + SL+AID  F G LD W  +A RL     I+++   Q+R + +FG LIANTD HFGN++ + R + SF LAP YDMLPMLF P +  +  + F PP P  + ++ W  A + A  +W   A++  +S  FR I   ++A  + +Q   RL
Sbjct:  164 IIGDESLQRYLDASREEQLVVNSGERDSLYPQLAKAAIEGDPAGSSAGGEQPKFAVMLQN-GINQHVLVKFSPQTNTPEGERWADLLVCEHLAIETIREAGLRAPTTRIVETTERVFLEVSRFDRIGRNGRLPLVSLTAIDNEFLGHLDDWAATAGRLEERKMISSDDANQLRWLYSFGALIANTDMHFGNISLIYRRNKSFELAPAYDMLPMLFRPVNGTVPKKDFIPPGPKRDIMQQWDSALESALTFWQKAANDERLSNAFREICQESSAKLQAIQSGPRL 446          
BLAST of mRNA_P-wetherbeei_contig18238.4.1 vs. uniprot
Match: A0A7V0WEW0_9BACT (Type II toxin-antitoxin system HipA family toxin YjjJ n=3 Tax=Bacteria TaxID=2 RepID=A0A7V0WEW0_9BACT)

HSP 1 Score: 217 bits (552), Expect = 7.810e-64
Identity = 115/269 (42.75%), Postives = 166/269 (61.71%), Query Frame = 1
Query:    1 LLGDVALDQYLAGLRQR-STVTSEERAVRYPQFVTEVLQGDLPGSSAHGEHPKFATLLQDQNVSTPVIVKFSPTLDTQVGQRWGDLLVAEHLAHAQLCAANVPACTSQIHTIANRRFLEVVRFDRSGREGRIGVSSLSAIDTGFYGRLDSWIESAARLHASGFITAETLEQIRLVATFGTLIANTDQHFGNLAFLDRYDGS-FALAPIYDMLPMLFAPQHDQIVARTFDPPHPTAN-TLRAWGRARDMAERYWATLADNTLISEQFRAI 798
            ++G+ +L +YL   RQ   T+   ER   YP+FV   L+G+  GSSA GE PKFA L+++ +    V+VKFSP + T  G+RW DLL+ EH+A   +    + +  S++     R  LEV RFDR GR GR+ + SL  ID+ F+GRLD WI +A+R   +G ++ E  + +R ++ FG+LIAN DQHFGN++ +   +   F+LAP YDMLPML+ PQ D++ ARTF+P   T +  L     A + A R+W T A +  I+E FR I
Sbjct:  182 IVGNESLGRYLEMARQPFETINVNERLTEYPRFVKSALEGNPAGSSAAGEQPKFAALVEENSELRHVLVKFSPMVTTPGGRRWADLLICEHIALNLIQGRGIDSANSRVLEAGGRYLLEVTRFDRQGRSGRLPMLSLFTIDSEFFGRLDDWISAASRFENNGMLSREDADNLRWLSVFGSLIANNDQHFGNISLITTDEKKRFSLAPAYDMLPMLYRPQEDEVPARTFEPKFGTVSQALALLPDAINWAVRFWDTAAGDHRITEDFREI 450          
BLAST of mRNA_P-wetherbeei_contig18238.4.1 vs. uniprot
Match: A0A1W7QVP5_9DELT (Transcriptional regulator n=3 Tax=Geobacteraceae TaxID=213422 RepID=A0A1W7QVP5_9DELT)

HSP 1 Score: 216 bits (549), Expect = 1.250e-63
Identity = 110/279 (39.43%), Postives = 165/279 (59.14%), Query Frame = 1
Query:    1 LLGDVALDQYLAGLRQ-RSTVTSEERAVRYPQFVTEVLQGDLPGSSAHGEHPKFATLLQDQNVSTPVIVKFSPTLDTQVGQRWGDLLVAEHLAHAQLCAANVPACTSQIHTIANRRFLEVVRFDRSGREGRIGVSSLSAIDTGFYGRLDSWIESAARLHASGFITAETLEQIRLVATFGTLIANTDQHFGNLAFLDRYDGSFALAPIYDMLPMLFAPQHDQIVARTFDPPHPTANTLRAWGRARDMAERYWATLADNTLISEQFRAIAAACFRTLQETA 834
            ++G+ +L++Y   +R+ ++ +  +E    YP+     ++G  PGSSA GEHPKF  +++    +  V+VKFSP LD+  G+RW DLLV EHLA   +  A + A  + +    NR FLEV RFDR+GR GR+ + SL A+D  FYG  D+W+++A R+   G +  E    +R ++ FG LIANTDQHFGN++ +    G+F LAP+YDMLPML+ P    ++ RTF PP        A+  A   A  +W    ++  IS +FR+I  +    L+  A
Sbjct:  167 VIGEESLERYFRSVREPQAPLGPDELPAAYPRMAHLAMEGQPPGSSAGGEHPKFTAIIERDGTARHVLVKFSPPLDSLEGRRWADLLVCEHLALEVVSEAGITAARTALLEAENRVFLEVERFDRTGRFGRLPMVSLRAVDNEFYGHQDNWVQAARRMEEQGQLPREDAASLRWLSVFGDLIANTDQHFGNVSLVPADKGTFRLAPVYDMLPMLYRPLDGVLLTRTFSPPAFAPGAPEAYASALAQALNFWERAGEDGRISVEFRSICRSNLEKLKALA 445          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18238.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A841HEB5_9GAMM3.240e-11359.14HipA_C domain-containing protein n=1 Tax=Povalibac... [more]
A0A829YF01_9GAMM6.430e-10355.56Transcriptional regulator n=2 Tax=Steroidobacter a... [more]
A0A534BB43_9GAMM3.870e-10255.91HipA_C domain-containing protein n=3 Tax=Gammaprot... [more]
UPI000E32101C1.260e-10154.12type II toxin-antitoxin system HipA family toxin Y... [more]
UPI0019C2329B3.550e-10056.94Type II toxin-antitoxin system HipA family toxin Y... [more]
A0A534D1W6_9GAMM4.020e-8148.00Type II toxin-antitoxin system HipA family toxin Y... [more]
A0A550J3Z1_9DELT6.090e-7044.96Type II toxin-antitoxin system HipA family toxin Y... [more]
A0A661PNK2_9DELT3.780e-6542.96Type II toxin-antitoxin system HipA family toxinox... [more]
A0A7V0WEW0_9BACT7.810e-6442.75Type II toxin-antitoxin system HipA family toxin Y... [more]
A0A1W7QVP5_9DELT1.250e-6339.43Transcriptional regulator n=3 Tax=Geobacteraceae T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18238contigP-wetherbeei_contig18238:501..1367 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1100721.ALKO01000032_gene171
PFAMsHTH_24,HipA_C
Model size867
Max annot lvl28216|Betaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.54e-63
EggNOG OGsCOG2512@1|root,COG3550@1|root,COG2512@2|Bacteria,COG3550@2|Bacteria,1QJ5P@1224|Proteobacteria,2VNBA@28216|Betaproteobacteria,4ABPY@80864|Comamonadaceae
DescriptionHipA-like C-terminal domain
Cds size867
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186140.3522294-CDS-P-wetherbeei_contig18238:500..13671683186140.3522294-CDS-P-wetherbeei_contig18238:500..1367Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18238 501..1367 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18238.4.1prot_P-wetherbeei_contig18238.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18238 501..1367 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18238.4.1

>prot_P-wetherbeei_contig18238.4.1 ID=prot_P-wetherbeei_contig18238.4.1|Name=mRNA_P-wetherbeei_contig18238.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=289bp
LLGDVALDQYLAGLRQRSTVTSEERAVRYPQFVTEVLQGDLPGSSAHGEH
PKFATLLQDQNVSTPVIVKFSPTLDTQVGQRWGDLLVAEHLAHAQLCAAN
VPACTSQIHTIANRRFLEVVRFDRSGREGRIGVSSLSAIDTGFYGRLDSW
IESAARLHASGFITAETLEQIRLVATFGTLIANTDQHFGNLAFLDRYDGS
FALAPIYDMLPMLFAPQHDQIVARTFDPPHPTANTLRAWGRARDMAERYW
ATLADNTLISEQFRAIAAACFRTLQETARLRSPTPVSG*
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mRNA from alignment at P-wetherbeei_contig18238:501..1367-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18238.4.1 ID=mRNA_P-wetherbeei_contig18238.4.1|Name=mRNA_P-wetherbeei_contig18238.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=867bp|location=Sequence derived from alignment at P-wetherbeei_contig18238:501..1367- (Phaeothamnion wetherbeei SAG_119_79)
CTGCTGGGCGATGTGGCTCTCGACCAGTATCTGGCAGGCCTTCGACAACG CTCGACCGTCACGAGCGAAGAGCGAGCCGTCCGCTATCCGCAGTTCGTCA CTGAAGTGCTGCAGGGCGATCTGCCCGGATCGTCCGCGCACGGTGAGCAT CCCAAATTCGCAACCCTGCTGCAGGATCAGAATGTCAGCACGCCGGTGAT CGTAAAGTTCTCACCCACGCTCGATACCCAGGTGGGTCAGCGCTGGGGCG ATCTGCTAGTAGCGGAGCACCTTGCCCATGCGCAACTATGTGCCGCGAAC GTACCCGCATGCACTTCGCAGATTCATACGATTGCCAATCGACGCTTTCT CGAAGTCGTTCGCTTCGACCGCTCGGGACGCGAAGGTCGTATCGGCGTGA GCTCTCTGTCCGCCATCGACACGGGCTTCTATGGCCGGCTCGACAGCTGG ATCGAATCCGCTGCACGCCTACACGCGAGCGGATTCATCACAGCAGAGAC ATTGGAACAGATCCGCCTGGTGGCGACCTTTGGCACATTGATCGCCAATA CGGATCAGCATTTCGGGAATCTGGCTTTTCTTGATCGTTACGACGGCAGC TTCGCGCTCGCTCCGATTTACGACATGCTCCCCATGCTCTTTGCACCTCA GCACGACCAGATTGTCGCGCGAACTTTCGATCCACCCCATCCCACCGCAA ATACCCTGCGAGCCTGGGGTCGCGCACGAGACATGGCAGAAAGATATTGG GCTACTTTGGCGGACAACACGCTCATCAGCGAACAGTTCCGAGCCATTGC CGCAGCGTGCTTTCGCACGCTTCAGGAAACCGCAAGGCTCAGATCCCCCA CTCCCGTTTCAGGGTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18238:501..1367-

>mRNA_P-wetherbeei_contig18238.4.1 ID=mRNA_P-wetherbeei_contig18238.4.1|Name=mRNA_P-wetherbeei_contig18238.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=867bp|location=Sequence derived from alignment at P-wetherbeei_contig18238:501..1367- (Phaeothamnion wetherbeei SAG_119_79)
CTGCTGGGCGATGTGGCTCTCGACCAGTATCTGGCAGGCCTTCGACAACG
CTCGACCGTCACGAGCGAAGAGCGAGCCGTCCGCTATCCGCAGTTCGTCA
CTGAAGTGCTGCAGGGCGATCTGCCCGGATCGTCCGCGCACGGTGAGCAT
CCCAAATTCGCAACCCTGCTGCAGGATCAGAATGTCAGCACGCCGGTGAT
CGTAAAGTTCTCACCCACGCTCGATACCCAGGTGGGTCAGCGCTGGGGCG
ATCTGCTAGTAGCGGAGCACCTTGCCCATGCGCAACTATGTGCCGCGAAC
GTACCCGCATGCACTTCGCAGATTCATACGATTGCCAATCGACGCTTTCT
CGAAGTCGTTCGCTTCGACCGCTCGGGACGCGAAGGTCGTATCGGCGTGA
GCTCTCTGTCCGCCATCGACACGGGCTTCTATGGCCGGCTCGACAGCTGG
ATCGAATCCGCTGCACGCCTACACGCGAGCGGATTCATCACAGCAGAGAC
ATTGGAACAGATCCGCCTGGTGGCGACCTTTGGCACATTGATCGCCAATA
CGGATCAGCATTTCGGGAATCTGGCTTTTCTTGATCGTTACGACGGCAGC
TTCGCGCTCGCTCCGATTTACGACATGCTCCCCATGCTCTTTGCACCTCA
GCACGACCAGATTGTCGCGCGAACTTTCGATCCACCCCATCCCACCGCAA
ATACCCTGCGAGCCTGGGGTCGCGCACGAGACATGGCAGAAAGATATTGG
GCTACTTTGGCGGACAACACGCTCATCAGCGAACAGTTCCGAGCCATTGC
CGCAGCGTGCTTTCGCACGCTTCAGGAAACCGCAAGGCTCAGATCCCCCA
CTCCCGTTTCAGGGTAA
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