mRNA_P-wetherbeei_contig1823.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1823.2.1
Unique NamemRNA_P-wetherbeei_contig1823.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1823.2.1 vs. uniprot
Match: A0A7S3H022_9STRA (Hypothetical protein n=5 Tax=Eukaryota TaxID=2759 RepID=A0A7S3H022_9STRA)

HSP 1 Score: 243 bits (621), Expect = 4.110e-81
Identity = 121/128 (94.53%), Postives = 127/128 (99.22%), Query Frame = 1 
Query:    1 MQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRSLSDYNIQKESTLHLVLRLRGGVYDPSLAALAKTFNCEKMVCRKCYARLPPRAQNCRKKKCGHTNQLRPKKKLK 384
            MQIFVKTLTGKTITL+VEPSD+IDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGR+LSDYNIQKESTLHLVLRLRGGV+DPSLAALAKTFNCEKM+CRKCYARLPPRA+NCRKKKCGHTNQLR KKKLK
Sbjct:   19 MQIFVKTLTGKTITLEVEPSDSIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVFDPSLAALAKTFNCEKMICRKCYARLPPRAKNCRKKKCGHTNQLRIKKKLK 146
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BLAST of mRNA_P-wetherbeei_contig1823.2.1 vs. uniprot
Match: W7TN89_9STRA (Ubiquitin n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TN89_9STRA)

HSP 1 Score: 244 bits (624), Expect = 6.720e-81
Identity = 122/128 (95.31%), Postives = 126/128 (98.44%), Query Frame = 1 
Query:    1 MQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRSLSDYNIQKESTLHLVLRLRGGVYDPSLAALAKTFNCEKMVCRKCYARLPPRAQNCRKKKCGHTNQLRPKKKLK 384
            MQIFVKTLTGKTITLDVEPSDTI+NVKQKIQDKEGIPPDQQRLIFAGKQLEDGR+LSDYNIQKESTLHLVLRLRGGVYDPSLAALAKTFNCEKM+CRKCYARLPPRA+NCRKKKCGHTN LR KKKLK
Sbjct:    1 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLAALAKTFNCEKMICRKCYARLPPRAKNCRKKKCGHTNHLRIKKKLK 128
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BLAST of mRNA_P-wetherbeei_contig1823.2.1 vs. uniprot
Match: B7G5H7_PHATC (Ubiquitin extension protein 1/2 n=9 Tax=Bacillariophyta TaxID=2836 RepID=B7G5H7_PHATC)

HSP 1 Score: 239 bits (610), Expect = 1.070e-79
Identity = 120/128 (93.75%), Postives = 123/128 (96.09%), Query Frame = 1 
Query:    1 MQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRSLSDYNIQKESTLHLVLRLRGGVYDPSLAALAKTFNCEKMVCRKCYARLPPRAQNCRKKKCGHTNQLRPKKKLK 384
            MQIFVKTLTGKTITLDVEPSDTIDNVK KIQDKEGIPPDQQRLIFAGKQLEDGR+LSDYNIQKESTLHLVLRLRGGVYDPSLA LAK FNC+K VCRKCYARLPPRA NCRKKKCGHT+QLRPKKKLK
Sbjct:    1 MQIFVKTLTGKTITLDVEPSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLALLAKGFNCDKAVCRKCYARLPPRATNCRKKKCGHTSQLRPKKKLK 128
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BLAST of mRNA_P-wetherbeei_contig1823.2.1 vs. uniprot
Match: A0A1Z5JFA3_FISSO (Large subunit ribosomal protein L40e n=4 Tax=Stramenopiles TaxID=33634 RepID=A0A1Z5JFA3_FISSO)

HSP 1 Score: 238 bits (608), Expect = 2.160e-79
Identity = 119/128 (92.97%), Postives = 123/128 (96.09%), Query Frame = 1 
Query:    1 MQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRSLSDYNIQKESTLHLVLRLRGGVYDPSLAALAKTFNCEKMVCRKCYARLPPRAQNCRKKKCGHTNQLRPKKKLK 384
            MQIFVKTLTGKTITLDVEPSDTIDNVK KIQDKEGIPPDQQRLIFAGKQLEDGR+LSDYNIQKESTLHLVLRLRGGVYDP+LA LAK FNC+K VCRKCYARLPPRA NCRKKKCGHT+QLRPKKKLK
Sbjct:    1 MQIFVKTLTGKTITLDVEPSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPTLAMLAKKFNCDKAVCRKCYARLPPRATNCRKKKCGHTSQLRPKKKLK 128
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BLAST of mRNA_P-wetherbeei_contig1823.2.1 vs. uniprot
Match: A0A448YZG3_9STRA (Ubiquitin-like domain-containing protein n=6 Tax=Bacillariophyta TaxID=2836 RepID=A0A448YZG3_9STRA)

HSP 1 Score: 236 bits (602), Expect = 1.780e-78
Identity = 117/128 (91.41%), Postives = 122/128 (95.31%), Query Frame = 1 
Query:    1 MQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRSLSDYNIQKESTLHLVLRLRGGVYDPSLAALAKTFNCEKMVCRKCYARLPPRAQNCRKKKCGHTNQLRPKKKLK 384
            MQIFVKTLTGKTITLDVEPSDTIDNVK KIQDKEGIPPDQQRLIFAGKQLEDGR+LSDYNIQKESTLHLVLRLRGGVYDPSLA LA+ +NCEK +CRKCYARLPP+A NCRKKKCGHT QLRPKKKLK
Sbjct:    1 MQIFVKTLTGKTITLDVEPSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLAMLARKYNCEKAICRKCYARLPPKASNCRKKKCGHTAQLRPKKKLK 128
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BLAST of mRNA_P-wetherbeei_contig1823.2.1 vs. uniprot
Match: A0A0G4EN71_VITBC (Ubiquitin-like domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EN71_VITBC)

HSP 1 Score: 236 bits (602), Expect = 8.550e-78
Identity = 117/128 (91.41%), Postives = 123/128 (96.09%), Query Frame = 1 
Query:    1 MQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRSLSDYNIQKESTLHLVLRLRGGVYDPSLAALAKTFNCEKMVCRKCYARLPPRAQNCRKKKCGHTNQLRPKKKLK 384
            MQIFVKTLTGKTITLDVEPSDTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGR+LSDYNIQKESTLHLVLRLRGGV +PSLA LA+ +NCEKM+CRKCYARLPPRA NCRKKKCGHTNQLRPKKKLK
Sbjct:   48 MQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVIEPSLAVLARKYNCEKMICRKCYARLPPRAVNCRKKKCGHTNQLRPKKKLK 175
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BLAST of mRNA_P-wetherbeei_contig1823.2.1 vs. uniprot
Match: K0RS17_THAOC (Ubiquitin-like domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RS17_THAOC)

HSP 1 Score: 236 bits (601), Expect = 1.640e-77
Identity = 117/128 (91.41%), Postives = 122/128 (95.31%), Query Frame = 1 
Query:    1 MQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRSLSDYNIQKESTLHLVLRLRGGVYDPSLAALAKTFNCEKMVCRKCYARLPPRAQNCRKKKCGHTNQLRPKKKLK 384
            M IFVKTLTGKTITLDVEPSDTIDNVK KIQDKEGIPPDQQRLIFAGKQLEDGR+LSDYNIQKESTLHLVLRLRGGVYDPSLA LAK FNCEK +CRKCYARLPP+A NCRKKKCGH++QLRPKKKLK
Sbjct:   57 MAIFVKTLTGKTITLDVEPSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLALLAKKFNCEKQICRKCYARLPPKATNCRKKKCGHSSQLRPKKKLK 184
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BLAST of mRNA_P-wetherbeei_contig1823.2.1 vs. uniprot
Match: RL40_NEUCR (Ubiquitin-60S ribosomal protein L40 n=7 Tax=Eukaryota TaxID=2759 RepID=RL40_NEUCR)

HSP 1 Score: 233 bits (594), Expect = 2.960e-77
Identity = 115/128 (89.84%), Postives = 122/128 (95.31%), Query Frame = 1 
Query:    1 MQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRSLSDYNIQKESTLHLVLRLRGGVYDPSLAALAKTFNCEKMVCRKCYARLPPRAQNCRKKKCGHTNQLRPKKKLK 384
            MQIFVKTLTGKTITL+VE SDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGR+LSDYNIQKESTLHLVLRLRGG+ +PSL ALA  FNC+KM+CRKCYARLPPRA NCRK+KCGHTNQLRPKKKLK
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLKALASKFNCDKMICRKCYARLPPRATNCRKRKCGHTNQLRPKKKLK 128
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BLAST of mRNA_P-wetherbeei_contig1823.2.1 vs. uniprot
Match: B6K0H2_SCHJY (Ribosomal-ubiquitin fusion protein Ubi1 n=8 Tax=Ascomycota TaxID=4890 RepID=B6K0H2_SCHJY)

HSP 1 Score: 232 bits (592), Expect = 5.960e-77
Identity = 115/128 (89.84%), Postives = 121/128 (94.53%), Query Frame = 1 
Query:    1 MQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRSLSDYNIQKESTLHLVLRLRGGVYDPSLAALAKTFNCEKMVCRKCYARLPPRAQNCRKKKCGHTNQLRPKKKLK 384
            MQIFVKTLTGKTITL+VE SDTIDNVK KIQDKEGIPPDQQRLIFAGKQLEDGR+LSDYNIQKESTLHLVLRLRGG+ +PSL ALA  +NCEKM+CRKCYARLPPRA NCRKKKCGHTNQLRPKKKLK
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLKALASKYNCEKMICRKCYARLPPRATNCRKKKCGHTNQLRPKKKLK 128
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BLAST of mRNA_P-wetherbeei_contig1823.2.1 vs. uniprot
Match: A0A1E1M444_RHYSE (Probable ubiquitin fusion protein (Ubiquitin / ribosomal protein) n=2 Tax=leotiomyceta TaxID=716546 RepID=A0A1E1M444_RHYSE)

HSP 1 Score: 232 bits (592), Expect = 5.960e-77
Identity = 115/128 (89.84%), Postives = 121/128 (94.53%), Query Frame = 1 
Query:    1 MQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRSLSDYNIQKESTLHLVLRLRGGVYDPSLAALAKTFNCEKMVCRKCYARLPPRAQNCRKKKCGHTNQLRPKKKLK 384
            MQIFVKTLTGKTITL+VE SDTIDNVK KIQDKEGIPPDQQRLIFAGKQLEDGR+LSDYNIQKESTLHLVLRLRGG+ +PSL ALA  FNC+KM+CRKCYARLPPRA NCRKKKCGHTNQLRPKKKLK
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLKALASKFNCDKMICRKCYARLPPRAANCRKKKCGHTNQLRPKKKLK 128
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1823.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3H022_9STRA4.110e-8194.53Hypothetical protein n=5 Tax=Eukaryota TaxID=2759 ... [more]
W7TN89_9STRA6.720e-8195.31Ubiquitin n=2 Tax=Monodopsidaceae TaxID=425072 Rep... [more]
B7G5H7_PHATC1.070e-7993.75Ubiquitin extension protein 1/2 n=9 Tax=Bacillario... [more]
A0A1Z5JFA3_FISSO2.160e-7992.97Large subunit ribosomal protein L40e n=4 Tax=Stram... [more]
A0A448YZG3_9STRA1.780e-7891.41Ubiquitin-like domain-containing protein n=6 Tax=B... [more]
A0A0G4EN71_VITBC8.550e-7891.41Ubiquitin-like domain-containing protein n=1 Tax=V... [more]
K0RS17_THAOC1.640e-7791.41Ubiquitin-like domain-containing protein n=1 Tax=T... [more]
RL40_NEUCR2.960e-7789.84Ubiquitin-60S ribosomal protein L40 n=7 Tax=Eukary... [more]
B6K0H2_SCHJY5.960e-7789.84Ribosomal-ubiquitin fusion protein Ubi1 n=8 Tax=As... [more]
A0A1E1M444_RHYSE5.960e-7789.84Probable ubiquitin fusion protein (Ubiquitin / rib... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1823contigP-wetherbeei_contig1823:5078..5854 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog159749.K0RS17
PFAMsRibosomal_L40e,ubiquitin
Model size387
Max annot lvl2759|Eukaryota
KEGG koko:K02927
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022613,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0042254,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Exons3
Evalue2.69e-78
EggNOG OGsCOG1552@1|root,KOG0003@2759|Eukaryota
Ec32 ortholog descriptionubiquitin UbiA
Ec32 orthologEc-16_000210.1
Descriptionstructural constituent of ribosome
Cds size387
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186140.2783182-CDS-P-wetherbeei_contig1823:5077..51041683186140.2783182-CDS-P-wetherbeei_contig1823:5077..5104Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1823 5078..5104 +
1683186140.2870107-CDS-P-wetherbeei_contig1823:5245..53211683186140.2870107-CDS-P-wetherbeei_contig1823:5245..5321Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1823 5246..5321 +
1683186140.294547-CDS-P-wetherbeei_contig1823:5570..58541683186140.294547-CDS-P-wetherbeei_contig1823:5570..5854Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1823 5571..5854 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1823.2.1prot_P-wetherbeei_contig1823.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1823 5078..5854 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1823.2.1

>prot_P-wetherbeei_contig1823.2.1 ID=prot_P-wetherbeei_contig1823.2.1|Name=mRNA_P-wetherbeei_contig1823.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=129bp
MQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQL
EDGRSLSDYNIQKESTLHLVLRLRGGVYDPSLAALAKTFNCEKMVCRKCY
ARLPPRAQNCRKKKCGHTNQLRPKKKLK*
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mRNA from alignment at P-wetherbeei_contig1823:5078..5854+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1823.2.1 ID=mRNA_P-wetherbeei_contig1823.2.1|Name=mRNA_P-wetherbeei_contig1823.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=777bp|location=Sequence derived from alignment at P-wetherbeei_contig1823:5078..5854+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGATCTTCGTGAAGACCCTCACGGTGCGCGAGTCTGGGAGCGGCGG
TGGCTACGTTATTCTCTCTTTCTCAGCCTCCATCCATTGAAAGGTCCTCT
GCGGCCTCCCTGAAAGCTTCTCAAATTTGACACGATTCCGCCCGCGCCGG
CTTTCGCTTCCCTCGCAGGGCAAGACTATCACGCTCGATGTCGAGCCGTC
AGACACTATCGACAATGTGAAGCAGAAGATTCAGGACAAGGAGGGTGCGT
CCTTCCGCGTGATGGCGCGTCCGCTCGGCTGCCGCTGGATGATTTGTCTC
ATCCTTCATTTTTAATGGATTATGCTTCGCATTACGCTGGGCGTTCCCAT
TATATAGCAATGGGATTAATTCTCTTTGAGTTTGCCTCTATTCTCTGATC
GCCTCCAAGAAATGAAGTAGCCCCGCCTCCCGAACGCATAGCAGGGATTG
ACTGCCGACGGTCGTTCCTTCGTCTTTCCCACCTCTCGCACAGGCATCCC
GCCGGACCAGCAGCGCCTGATCTTCGCCGGAAAGCAGCTGGAGGACGGAC
GCTCCCTTTCGGACTACAACATCCAGAAGGAGTCGACGCTCCATCTGGTG
CTGCGCCTCCGCGGCGGCGTTTACGACCCGTCGCTGGCGGCACTCGCCAA
GACGTTCAACTGCGAGAAGATGGTCTGCCGCAAGTGCTACGCCCGGCTGC
CGCCCCGCGCCCAGAACTGCCGGAAGAAAAAGTGCGGCCACACCAACCAG
CTGCGGCCCAAGAAGAAGTTGAAGTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1823:5078..5854+

>mRNA_P-wetherbeei_contig1823.2.1 ID=mRNA_P-wetherbeei_contig1823.2.1|Name=mRNA_P-wetherbeei_contig1823.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=387bp|location=Sequence derived from alignment at P-wetherbeei_contig1823:5078..5854+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACTATCACGCTCGATGT
CGAGCCGTCAGACACTATCGACAATGTGAAGCAGAAGATTCAGGACAAGG
AGGGCATCCCGCCGGACCAGCAGCGCCTGATCTTCGCCGGAAAGCAGCTG
GAGGACGGACGCTCCCTTTCGGACTACAACATCCAGAAGGAGTCGACGCT
CCATCTGGTGCTGCGCCTCCGCGGCGGCGTTTACGACCCGTCGCTGGCGG
CACTCGCCAAGACGTTCAACTGCGAGAAGATGGTCTGCCGCAAGTGCTAC
GCCCGGCTGCCGCCCCGCGCCCAGAACTGCCGGAAGAAAAAGTGCGGCCA
CACCAACCAGCTGCGGCCCAAGAAGAAGTTGAAGTAA
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