mRNA_P-wetherbeei_contig1822.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1822.2.1
Unique NamemRNA_P-wetherbeei_contig1822.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1822.2.1 vs. uniprot
Match: W7TRR7_9STRA (Tf1-like protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TRR7_9STRA)

HSP 1 Score: 127 bits (318), Expect = 3.630e-30
Identity = 69/159 (43.40%), Postives = 90/159 (56.60%), Query Frame = 3
Query:  291 AALVPDVIDKVHDKVALRVRFDKHFTVADGTELDQNMTAIEPDVLLEGTKKKALYTLIMSDPDAPTPQNPTHREYLHWLVTNIPASRAKAAAGDLVVGYVGPAPPEGRHRYGLTVWLQHKDRPVMVETSPLRPGFKTRAFAAAHELEGPVGALVFYVPH 767
            A ++PDVID    +V +R+ +D        T L +    + P V LEG++   LYTL MSDPDAP+P++P+HREYLHW+V+NIP      A G  VV Y  P PP+G HRY LTV  Q    P+ V     R GF+TR F     ++  VGA  F   H
Sbjct:   44 AGVIPDVIDNFDPQVQIRITYDSLLITPGATILPRQGVHM-PQVTLEGSQPGHLYTLFMSDPDAPSPEHPSHREYLHWIVSNIPGGANDIAEGTEVVPYAPPTPPQGTHRYVLTVMEQPGTNPMTVRPPAQRGGFRTRTFGKEAGMDV-VGATFFKAAH 200          
BLAST of mRNA_P-wetherbeei_contig1822.2.1 vs. uniprot
Match: I1HBB0_BRADI (Uncharacterized protein n=1 Tax=Brachypodium distachyon TaxID=15368 RepID=I1HBB0_BRADI)

HSP 1 Score: 117 bits (293), Expect = 5.040e-27
Identity = 69/155 (44.52%), Postives = 94/155 (60.65%), Query Frame = 3
Query:  297 LVPDVIDKVHDKVALRVRFDKHFTVADGTELDQNMTAIEPDVLLEGTKKKALYTLIMSDPDAPTPQNPTHREYLHWLVTNIPASRAKAAAGDLVVGYVGPAPPEGRHRYGLTVWLQHKDRPV--MVETSPLRPGFKTRAFAAAHELEGPVGALVF 755
            ++ +V+D     VA+ V +     +++G  +  +M A +P V + G ++  LYTL+M+DPDAP+P +PT REYLHW+V NIP     A  GD VV Y+GPAPP G HRY L ++ Q K R V  M      R  F TRAFAAAH+L  PV  + F
Sbjct:   13 VIGEVVDLFVPSVAMAVAYGPK-DISNGCHIKPSMAAAQPLVRISG-RRNDLYTLVMTDPDAPSPSDPTMREYLHWIVVNIPGG-TDATKGDTVVPYMGPAPPVGIHRYVLVLFEQ-KTRAVDGMTAAPADRAYFSTRAFAAAHDLGLPVAVVYF 163          
BLAST of mRNA_P-wetherbeei_contig1822.2.1 vs. uniprot
Match: K3XS03_SETIT (Uncharacterized protein n=20 Tax=Panicoideae TaxID=147369 RepID=K3XS03_SETIT)

HSP 1 Score: 113 bits (283), Expect = 1.090e-25
Identity = 68/153 (44.44%), Postives = 92/153 (60.13%), Query Frame = 3
Query:  297 LVPDVIDKVHDKVALRVRFDKHFTVADGTELDQNMTAIEPDVLLEGTKKKALYTLIMSDPDAPTPQNPTHREYLHWLVTNIPASRAKAAAGDLVVGYVGPAPPEGRHRYGLTVWLQHKDRPVMVETSPLRPGFKTRAFAAAHELEGPVGALVF 755
            ++ +V+D     +++ V +     +++G  L  + TA  P V + G ++  LYTLIM+DPDAP+P +PT REYLHW+VTNIP     A  G+ VV Y+GP PP G HRY L ++ Q K R V  E    R  F TRAFAAAHEL  P   + F
Sbjct:   13 VIGEVVDLFVPSISMTVAYGPK-DISNGRLLKPSATAAPPLVRISG-RRNDLYTLIMTDPDAPSPSDPTMREYLHWIVTNIPGG-TDATKGEEVVEYMGPRPPVGIHRYVLVLFEQ-KTR-VNAEAPGERANFNTRAFAAAHELGLPTAVVYF 160          
BLAST of mRNA_P-wetherbeei_contig1822.2.1 vs. uniprot
Match: A0A8J5W3G2_ZIZPA (Uncharacterized protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5W3G2_ZIZPA)

HSP 1 Score: 112 bits (281), Expect = 2.360e-25
Identity = 68/155 (43.87%), Postives = 91/155 (58.71%), Query Frame = 3
Query:  297 LVPDVIDKVHDKVALRVRFDKHFTVADGTELDQNMTAIEPDVLLEGTKKKALYTLIMSDPDAPTPQNPTHREYLHWLVTNIPASRAKAAAGDLVVGYVGPAPPEGRHRYGLTVWLQHKDRPVMV--ETSPLRPGFKTRAFAAAHELEGPVGALVF 755
            +V DV+D      A+ VRF     + +G E+  ++TA  P V + G +  AL+TL+M+DPDAP+P  PT RE+LHWLV NIP  +   + G++VV Y+GP PP G HRY L V  Q K R      +    R  F TRAFA  H+L  PV A+ F
Sbjct:   13 VVGDVVDLFVPTTAMSVRFGTR-DLTNGCEIKPSVTAAAPAVQIAG-RANALFTLVMTDPDAPSPSEPTMREWLHWLVVNIPGGK-DPSQGEVVVPYMGPKPPVGIHRYVL-VLFQQKARVAAPAPDAEAARGRFSTRAFAERHDLGLPVAAMYF 163          
BLAST of mRNA_P-wetherbeei_contig1822.2.1 vs. uniprot
Match: A0A1B1LTF7_CYCRE (MFT-like protein n=1 Tax=Cycas revoluta TaxID=3396 RepID=A0A1B1LTF7_CYCRE)

HSP 1 Score: 112 bits (280), Expect = 2.990e-25
Identity = 68/155 (43.87%), Postives = 89/155 (57.42%), Query Frame = 3
Query:  297 LVPDVIDKVHDKVALRVRFDKHFTVADGTELDQNMTAIEPDVLLEGTKKKALYTLIMSDPDAPTPQNPTHREYLHWLVTNIPASRAKAAAGDLVVGYVGPAPPEGRHRYGLTVWLQHKDRPVMVETSPLRP--GFKTRAFAAAHELEGPVGALVF 755
            +V +VID     V   V +     V +G E+  + T   P V +  T  K LYTL+M+DPDAP+P  P+ REY+HW+VT+IP     A  G  V+ YVGP PP G HRY   V++  K R  M+ T+P +P   F TRAFAA H L  PV A+ F
Sbjct:   13 VVGEVIDMFVPSVEAAVYYGSK-QVTNGCEIKPSATVQRPTVQIRRTYDKTLYTLVMTDPDAPSPSEPSMREYVHWVVTDIPGG-TDACQGKEVLPYVGPRPPIGIHRY---VFVLFKQRGPMIMTTPPQPRNNFSTRAFAAHHGLGLPVAAVYF 162          
BLAST of mRNA_P-wetherbeei_contig1822.2.1 vs. uniprot
Match: G1UE17_WHEAT (MFT n=24 Tax=Triticeae TaxID=147389 RepID=G1UE17_WHEAT)

HSP 1 Score: 112 bits (280), Expect = 3.160e-25
Identity = 64/154 (41.56%), Postives = 92/154 (59.74%), Query Frame = 3
Query:  297 LVPDVIDKVHDKVALRVRFDKHFTVADGTELDQNMTAIEPDVLLEGTKKKALYTLIMSDPDAPTPQNPTHREYLHWLVTNIPASRAKAAAGDLVVGYVGPAPPEGRHRYGLTVWLQHKDRPVMVETSPL-RPGFKTRAFAAAHELEGPVGALVF 755
            ++ +V+D     VA+ V +     +++G  +  ++ A +P V + G ++  LYTL+M+DPDAP+P  PT +EYLHW+V NIP     A  G++VV Y+GP PP G HRY L ++ Q    P +   SP  R  F TRAFAA HEL  PV  + F
Sbjct:   13 VIGEVVDMFVPSVAMAVAYGAR-DLSNGCHVKPSLAADQPLVRISG-RRNDLYTLVMTDPDAPSPSEPTMKEYLHWIVVNIPGG-TDATKGEVVVPYMGPRPPVGIHRYVLVLFEQKTRFPYVPAASPDDRAYFNTRAFAANHELGLPVAVVYF 163          
BLAST of mRNA_P-wetherbeei_contig1822.2.1 vs. uniprot
Match: A0A804I7P6_MUSAM (Uncharacterized protein n=4 Tax=Musa TaxID=4640 RepID=A0A804I7P6_MUSAM)

HSP 1 Score: 112 bits (280), Expect = 3.420e-25
Identity = 62/153 (40.52%), Postives = 87/153 (56.86%), Query Frame = 3
Query:  297 LVPDVIDKVHDKVALRVRFDKHFTVADGTELDQNMTAIEPDVLLEGTKKKALYTLIMSDPDAPTPQNPTHREYLHWLVTNIPASRAKAAAGDLVVGYVGPAPPEGRHRYGLTVWLQHKDRPVMVETSPLRPGFKTRAFAAAHELEGPVGALVF 755
            +V DV+D       +++ ++K  T  +G+EL  +M A EP V + G   + LYTL+M DPDAP+P NPT REYLHWLVT+IP +   A  G+ +V Y  P P  G HR+   ++ Q   + +       R  F TR FAA + L  PV A+ F
Sbjct:   11 VVGDVLDPFVKSATMKITYNKELT--NGSELKPSMVATEPRVEMRGHNTRNLYTLVMVDPDAPSPSNPTKREYLHWLVTDIPET-TNATYGNEIVSYESPRPTAGIHRFVFVLFRQSVRQTIYAPG--WRQNFSTRDFAAVYNLGDPVAAMFF 158          
BLAST of mRNA_P-wetherbeei_contig1822.2.1 vs. uniprot
Match: A0A3S6CWA1_LOLPR (FT18 n=2 Tax=Lolium TaxID=4520 RepID=A0A3S6CWA1_LOLPR)

HSP 1 Score: 112 bits (279), Expect = 4.450e-25
Identity = 68/155 (43.87%), Postives = 93/155 (60.00%), Query Frame = 3
Query:  297 LVPDVIDKVHDKVALRVRFDKHFTVADGTELDQNMTAIEPDVLLEGTKKKALYTLIMSDPDAPTPQNPTHREYLHWLVTNIPASRAKAAAGDLVVGYVGPAPPEGRHRYGLTVWLQHKDRPVMVETSPL--RPGFKTRAFAAAHELEGPVGALVF 755
            ++ +V+D     VA+ V +     V++G  +  ++ A +P V + G ++  LYTL+M+DPDAP+P +PT REYLHW+V NIP     A  GD+V+ Y+GP PP G HRY L V  Q K R V    +P   RP F TRAFA  HEL  PV  + F
Sbjct:   13 VIGEVVDLFVPSVAMAVSYGAK-DVSNGCHVKPSIAADQPLVRISG-RRNDLYTLLMTDPDAPSPSDPTMREYLHWIVMNIPGG-TDATKGDVVMPYLGPQPPVGIHRYVL-VLFQQKSRIVDGYAAPPADRPYFNTRAFAFNHELGLPVAVVYF 163          
BLAST of mRNA_P-wetherbeei_contig1822.2.1 vs. uniprot
Match: A0A843UXD7_COLES (Uncharacterized protein n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843UXD7_COLES)

HSP 1 Score: 112 bits (281), Expect = 5.790e-25
Identity = 66/158 (41.77%), Postives = 88/158 (55.70%), Query Frame = 3
Query:  291 AALVPDVIDKVHDKVALRVRFDKHFTVADGTELDQNMTAIEPDVLLEGT---KKKALYTLIMSDPDAPTPQNPTHREYLHWLVTNIPASRAKAAAGDLVVGYVGPAPPEGRHRYGLTVWLQHKDRPVMVETSPLRPGFKTRAFAAAHELEGPVGALVF 755
            A ++PDVID+      + VR+     V DG ++  ++ A  PDV + G        LY L+MSDPDAP+P NP+ RE+LHW+V ++P   +    G  +V Y GP PP G HRY   ++ Q K     + T   R  FKTRAFAA H L  PV AL F
Sbjct:   45 ARVIPDVIDEFRPSAEVAVRYGGT-QVVDGHDIRPSIAAKPPDVRIRGAGCGSSGDLYALVMSDPDAPSPSNPSKREWLHWIVVDVPGG-SDITKGKELVPYAGPTPPIGVHRYVFAIFKQ-KGTLQGITTPSSRASFKTRAFAAEHGLGLPVAALYF 199          
BLAST of mRNA_P-wetherbeei_contig1822.2.1 vs. uniprot
Match: UPI00098E5668 (protein FLOWERING LOCUS T-like n=1 Tax=Asparagus officinalis TaxID=4686 RepID=UPI00098E5668)

HSP 1 Score: 111 bits (277), Expect = 9.610e-25
Identity = 67/154 (43.51%), Postives = 86/154 (55.84%), Query Frame = 3
Query:  297 LVPDVIDKVHDKVALRVRF-DKHFTVADGTELDQNMTAIEPDVLLEGTKKKALYTLIMSDPDAPTPQNPTHREYLHWLVTNIPASRAKAAAGDLVVGYVGPAPPEGRHRYGLTVWLQHKDRPVMVETSPLRPGFKTRAFAAAHELEGPVGALVF 755
            ++ DV+D      ++RV F DK  T  +GT L Q   A  P V +EG     LYT++M +PDAPTP NPTHREYLHWLVT+IP +   A+ G+ +V Y  P  P G HR    ++ Q   + V       R  F TR FAA H+L  P  AL F
Sbjct:   16 IIGDVVDPFVKSASMRVVFGDKEVT--NGTRLRQIDVASPPRVTIEGRDASTLYTVVMVNPDAPTPTNPTHREYLHWLVTDIPET-VDASHGNEIVPYESPQTPTGIHRIVFVLFRQEVQQTVYAPG--WRQNFNTRDFAAIHDLGQPAAALYF 164          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1822.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W7TRR7_9STRA3.630e-3043.40Tf1-like protein n=2 Tax=Monodopsidaceae TaxID=425... [more]
I1HBB0_BRADI5.040e-2744.52Uncharacterized protein n=1 Tax=Brachypodium dista... [more]
K3XS03_SETIT1.090e-2544.44Uncharacterized protein n=20 Tax=Panicoideae TaxID... [more]
A0A8J5W3G2_ZIZPA2.360e-2543.87Uncharacterized protein n=1 Tax=Zizania palustris ... [more]
A0A1B1LTF7_CYCRE2.990e-2543.87MFT-like protein n=1 Tax=Cycas revoluta TaxID=3396... [more]
G1UE17_WHEAT3.160e-2541.56MFT n=24 Tax=Triticeae TaxID=147389 RepID=G1UE17_W... [more]
A0A804I7P6_MUSAM3.420e-2540.52Uncharacterized protein n=4 Tax=Musa TaxID=4640 Re... [more]
A0A3S6CWA1_LOLPR4.450e-2543.87FT18 n=2 Tax=Lolium TaxID=4520 RepID=A0A3S6CWA1_LO... [more]
A0A843UXD7_COLES5.790e-2541.77Uncharacterized protein n=1 Tax=Colocasia esculent... [more]
UPI00098E56689.610e-2543.51protein FLOWERING LOCUS T-like n=1 Tax=Asparagus o... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1822contigP-wetherbeei_contig1822:1279..3278 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog15368.BRADI2G01020.1
PFAMsPBP
Model size1646
Max annot lvl35493|Streptophyta
Hectar predicted targeting categorysignal anchor
GOsGO:0001101,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0008150,GO:0009719,GO:0009725,GO:0009737,GO:0010029,GO:0010030,GO:0010033,GO:0033993,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0048518,GO:0048580,GO:0048582,GO:0050789,GO:0050793,GO:0050896,GO:0051094,GO:0051239,GO:0051240,GO:0065007,GO:0097305,GO:1900140,GO:1901700,GO:2000026
Exons3
Evalue2.99e-29
EggNOG OGsCOG1881@1|root,KOG3346@2759|Eukaryota,37QUE@33090|Viridiplantae,3GBS2@35493|Streptophyta,3KWJN@4447|Liliopsida,3IER2@38820|Poales
DescriptionPhosphatidylethanolamine-binding protein
Cds size945
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186139.8414488-UTR-P-wetherbeei_contig1822:1278..13671683186139.8414488-UTR-P-wetherbeei_contig1822:1278..1367Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1822 1279..1367 +
1683186139.877634-UTR-P-wetherbeei_contig1822:2666..32781683186139.877634-UTR-P-wetherbeei_contig1822:2666..3278Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1822 2667..3278 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186139.8502276-CDS-P-wetherbeei_contig1822:1367..16101683186139.8502276-CDS-P-wetherbeei_contig1822:1367..1610Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1822 1368..1610 +
1683186139.8578916-CDS-P-wetherbeei_contig1822:1692..18161683186139.8578916-CDS-P-wetherbeei_contig1822:1692..1816Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1822 1693..1816 +
1683186139.8680305-CDS-P-wetherbeei_contig1822:2088..26661683186139.8680305-CDS-P-wetherbeei_contig1822:2088..2666Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1822 2089..2666 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1822.2.1prot_P-wetherbeei_contig1822.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1822 1368..2666 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1822.2.1

>prot_P-wetherbeei_contig1822.2.1 ID=prot_P-wetherbeei_contig1822.2.1|Name=mRNA_P-wetherbeei_contig1822.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=315bp
MADADGERITLLHRDGHGIGSTHFRRLTAALSLLAFSAIALTGYMYMQAQ
AVANDMNFKGAKKGKPGAALVPDVIDKVHDKVALRVRFDKHFTVADGTEL
DQNMTAIEPDVLLEGTKKKALYTLIMSDPDAPTPQNPTHREYLHWLVTNI
PASRAKAAAGDLVVGYVGPAPPEGRHRYGLTVWLQHKDRPVMVETSPLRP
GFKTRAFAAAHELEGPVGALVFYVPHTEEAGEEEEAAPPEVGGEDEATAA
EAEAAAAGAEAAAAEAPAATVDAGEAAAAPEAGETAAASEAEEAGPSEPE
EAGPSETQEATPEQ*
back to top

mRNA from alignment at P-wetherbeei_contig1822:1279..3278+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1822.2.1 ID=mRNA_P-wetherbeei_contig1822.2.1|Name=mRNA_P-wetherbeei_contig1822.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2000bp|location=Sequence derived from alignment at P-wetherbeei_contig1822:1279..3278+ (Phaeothamnion wetherbeei SAG_119_79)
TTGTCGCTTCCCGTGCTCTTCTGGATCTAGAAGGCAGGAGAGCCGAGAAG GAGGGAGAAGAGCGACGCACAAATTACCTGGGTGAAGCCATGGCCGACGC CGACGGCGAACGCATCACGCTGTTGCACAGGGACGGGCATGGCATCGGGA GCACACACTTCCGCCGTCTGACGGCCGCGCTGTCTCTCTTGGCCTTTAGC GCGATCGCCCTCACTGGCTACATGTACATGCAAGCGCAAGCGGTAGCCAA TGACATGAACTTCAAGGGGGCCAAGAAGGGGAAACCTGGCGCCGCCTTGG TTCCGGACGTCATCGACAAGGTTCATGACAAGGTGATTGGCATGAACTGG TGCATAGTCACACGTGATTCGCAATGCGCGCTGACATTCCTTTGAAAACG GTATGGAAAGACAGGTGGCGCTCCGCGTGCGCTTTGACAAGCACTTCACT GTGGCCGACGGCACTGAGCTCGACCAGAACATGACCGCAATCGAGCCGGA CGTCCTGCTCGAGGGCACGAAGAAGAAGGCGCTCTATAGTAAGTTTTGTT CCTGGCCACAAACAGCTTTACAGTACACTAGCCTATTTTAAAAAGTCGAA ATTCGGGCTTGTCATTCTTTTGTTGCACATCATGGTTTCCAAATCGCTGT ACGTACTATTTCTCTTCGCACCCCTCTCATTCCAAATCTATTTTGGCAAA GCTCGCTCTGCAAACCTCTCTTTGCAAACGTCTGTTTGCGAACCTGTTCT AAATCCACACTCACCCTTCTCTACGCAAACCTCTCATTGCATCTTCACTC GCTGCTGCAGCACTCATCATGTCGGACCCGGACGCGCCGACCCCCCAAAA CCCCACACACCGCGAGTACCTCCACTGGCTCGTCACCAACATTCCGGCTT CGCGGGCCAAGGCCGCCGCGGGCGACCTCGTCGTTGGCTACGTTGGCCCG GCGCCCCCGGAGGGCCGCCACCGCTACGGCCTGACGGTGTGGCTGCAGCA CAAGGACCGGCCGGTCATGGTCGAGACATCGCCGCTCCGCCCGGGGTTCA AGACGCGCGCCTTCGCGGCCGCCCACGAGCTAGAGGGGCCCGTCGGCGCA CTCGTCTTTTACGTCCCGCACACGGAAGAGGCTGGGGAAGAGGAAGAGGC GGCGCCGCCGGAGGTGGGAGGGGAAGATGAGGCGACGGCGGCGGAGGCGG AGGCGGCAGCAGCCGGCGCCGAGGCGGCGGCCGCGGAGGCGCCGGCTGCC ACGGTGGACGCGGGTGAGGCTGCGGCGGCTCCGGAGGCGGGGGAGACAGC AGCGGCTTCGGAGGCGGAAGAAGCGGGGCCGTCAGAGCCGGAAGAGGCGG GGCCGTCAGAGACGCAAGAGGCTACGCCGGAGCAGTAGGATGGAGCGACA GTAGCTCAGGACGAGAGACTGCTTTGGAGCTACCATGGTGGCAAAGACGC TTCTTTAGGAGGAAGCGGCCAGCGCGGAAGTGGGCCAGGCGTCTTCCGTG GTCGTGAAGACGCTCCCGCAGGAGCAAATAAATGGCTGGCTCGGTGGGTA CAAGGGGCGCGTCGCACACGATGACGGAGAATAAGGGGGTGAATGGAGTC CACGAACAAGATTCTGTGTCGGAAATGGACTTTGATTTGGGCGAACAGGG GGGGCATAGTTCAGAGATACGAGCGACGTTGGTGGGTTACCAAAAAAGGC ACCTGTAGGTAGAGGTAAGGGGTGGAAAAGCCTAGAGAGGTTGTGAATAA GGTGGAAGAGGGCATAGCATCCCTGCAGGGGTAGTCTCCGACCGCTACGC TAGGAGGAAGAAATACAACGGCGATCCACAAATGCTCGCCCGGCTTCACG TGGCTCGTCTTTGCGTCGTCGATGACCCGGAAGCCGCCGAGCGAATCGCT AAGAGGAAGAGGGATCGGACCGCAACATGCCCTGGAGGCATCCTGAAGAG CCTTCAAGCAGCGCTCCCAACTGTGCGGCACTCCTCGACGGCGGCGGCGG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1822:1279..3278+

>mRNA_P-wetherbeei_contig1822.2.1 ID=mRNA_P-wetherbeei_contig1822.2.1|Name=mRNA_P-wetherbeei_contig1822.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=945bp|location=Sequence derived from alignment at P-wetherbeei_contig1822:1279..3278+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCGACGCCGACGGCGAACGCATCACGCTGTTGCACAGGGACGGGCA
TGGCATCGGGAGCACACACTTCCGCCGTCTGACGGCCGCGCTGTCTCTCT
TGGCCTTTAGCGCGATCGCCCTCACTGGCTACATGTACATGCAAGCGCAA
GCGGTAGCCAATGACATGAACTTCAAGGGGGCCAAGAAGGGGAAACCTGG
CGCCGCCTTGGTTCCGGACGTCATCGACAAGGTTCATGACAAGGTGGCGC
TCCGCGTGCGCTTTGACAAGCACTTCACTGTGGCCGACGGCACTGAGCTC
GACCAGAACATGACCGCAATCGAGCCGGACGTCCTGCTCGAGGGCACGAA
GAAGAAGGCGCTCTATACACTCATCATGTCGGACCCGGACGCGCCGACCC
CCCAAAACCCCACACACCGCGAGTACCTCCACTGGCTCGTCACCAACATT
CCGGCTTCGCGGGCCAAGGCCGCCGCGGGCGACCTCGTCGTTGGCTACGT
TGGCCCGGCGCCCCCGGAGGGCCGCCACCGCTACGGCCTGACGGTGTGGC
TGCAGCACAAGGACCGGCCGGTCATGGTCGAGACATCGCCGCTCCGCCCG
GGGTTCAAGACGCGCGCCTTCGCGGCCGCCCACGAGCTAGAGGGGCCCGT
CGGCGCACTCGTCTTTTACGTCCCGCACACGGAAGAGGCTGGGGAAGAGG
AAGAGGCGGCGCCGCCGGAGGTGGGAGGGGAAGATGAGGCGACGGCGGCG
GAGGCGGAGGCGGCAGCAGCCGGCGCCGAGGCGGCGGCCGCGGAGGCGCC
GGCTGCCACGGTGGACGCGGGTGAGGCTGCGGCGGCTCCGGAGGCGGGGG
AGACAGCAGCGGCTTCGGAGGCGGAAGAAGCGGGGCCGTCAGAGCCGGAA
GAGGCGGGGCCGTCAGAGACGCAAGAGGCTACGCCGGAGCAGTAG
back to top