mRNA_P-wetherbeei_contig1822.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1822.1.1
Unique NamemRNA_P-wetherbeei_contig1822.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1822.1.1 vs. uniprot
Match: D7FQR5_ECTSI (FAD binding / catalytic/ tRNA dihydrouridine synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQR5_ECTSI)

HSP 1 Score: 130 bits (327), Expect = 7.300e-34
Identity = 59/99 (59.60%), Postives = 77/99 (77.78%), Query Frame = 1 
Query:    1 QIFSVAPMLEYTDRHMRFFMRLLTQRSVMWTEMAVSNALVHAEHDALATELGF-DGTEHPIVLQIGGSDVEAVRESCRIARPFGYDGFNLNCGCPSDKV 294
            ++FS+APM+EYTDRHMR+ +RLLT R+V+WTEM  S+ ++H   D L   L + +  EHP+VLQIGGSD   VRE+CR+ARP+ YD  NLNCGCPS+KV
Sbjct:   80 EVFSLAPMMEYTDRHMRYLLRLLTTRTVLWTEMVPSSTIIHNPDD-LGRFLDYNEEVEHPVVLQIGGSDTTDVREACRLARPYKYDAINLNCGCPSEKV 177
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BLAST of mRNA_P-wetherbeei_contig1822.1.1 vs. uniprot
Match: A0A526YMD8_9HYPH (tRNA dihydrouridine(20/20a) synthase DusA (Fragment) n=1 Tax=Mesorhizobium sp. TaxID=1871066 RepID=A0A526YMD8_9HYPH)

HSP 1 Score: 120 bits (302), Expect = 1.230e-33
Identity = 53/96 (55.21%), Postives = 74/96 (77.08%), Query Frame = 1 
Query:    7 FSVAPMLEYTDRHMRFFMRLLTQRSVMWTEMAVSNALVHAEHDALATELGFDGTEHPIVLQIGGSDVEAVRESCRIARPFGYDGFNLNCGCPSDKV 294
            F++APM+++TDRH RF  R LT+R++++TEM V++A++H E + L   LGFDGTEHP+ LQ+GGSD + + E+ RI   FGYD  NLN GCPSD+V
Sbjct:    8 FAIAPMMDWTDRHCRFLHRQLTRRALLYTEMVVADAVIHGEPERL---LGFDGTEHPVALQLGGSDPQKLAEAARIGEAFGYDEINLNVGCPSDRV 100
[Close]
BLAST of mRNA_P-wetherbeei_contig1822.1.1 vs. uniprot
Match: A0A659YPC8_9HYPH (tRNA dihydrouridine(20/20a) synthase DusA (Fragment) n=1 Tax=Mesorhizobium sp. TaxID=1871066 RepID=A0A659YPC8_9HYPH)

HSP 1 Score: 119 bits (298), Expect = 1.660e-32
Identity = 52/96 (54.17%), Postives = 73/96 (76.04%), Query Frame = 1 
Query:    7 FSVAPMLEYTDRHMRFFMRLLTQRSVMWTEMAVSNALVHAEHDALATELGFDGTEHPIVLQIGGSDVEAVRESCRIARPFGYDGFNLNCGCPSDKV 294
            F++APM+++TDRH RF  R LT+R++++TEM V++A++H E + L   LGFD TEHP+ LQ+GGSD + + E+ RI   FGYD  NLN GCPSD+V
Sbjct:    7 FAIAPMMDWTDRHCRFLHRQLTRRALLYTEMVVADAVIHGERERL---LGFDATEHPVALQLGGSDPQKLAEAARIGEAFGYDEINLNVGCPSDRV 99
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BLAST of mRNA_P-wetherbeei_contig1822.1.1 vs. uniprot
Match: A0A3Q8XQZ9_9HYPH (tRNA-dihydrouridine(20/20a) synthase n=1 Tax=Georhizobium profundi TaxID=2341112 RepID=A0A3Q8XQZ9_9HYPH)

HSP 1 Score: 123 bits (309), Expect = 3.520e-32
Identity = 55/96 (57.29%), Postives = 74/96 (77.08%), Query Frame = 1 
Query:    7 FSVAPMLEYTDRHMRFFMRLLTQRSVMWTEMAVSNALVHAEHDALATELGFDGTEHPIVLQIGGSDVEAVRESCRIARPFGYDGFNLNCGCPSDKV 294
            F+VAPM+++TDRH RF  RLLT++S+++TEM V++A++H + D L   LGFD  EHP+ LQIGGSD + + E+ RI   FGYD  NLNCGCPSD+V
Sbjct:    8 FAVAPMMDWTDRHCRFLHRLLTKQSLLYTEMVVADAVIHGDRDRL---LGFDPVEHPVALQIGGSDPDKLAEAARIGADFGYDEINLNCGCPSDRV 100
[Close]
BLAST of mRNA_P-wetherbeei_contig1822.1.1 vs. uniprot
Match: A0A399RS06_9PROT (tRNA-dihydrouridine(20/20a) synthase n=3 Tax=Henriciella mobilis TaxID=2305467 RepID=A0A399RS06_9PROT)

HSP 1 Score: 121 bits (304), Expect = 2.040e-31
Identity = 52/96 (54.17%), Postives = 72/96 (75.00%), Query Frame = 1 
Query:    7 FSVAPMLEYTDRHMRFFMRLLTQRSVMWTEMAVSNALVHAEHDALATELGFDGTEHPIVLQIGGSDVEAVRESCRIARPFGYDGFNLNCGCPSDKV 294
            FSVAPM+++TDRH R F R L++R+++WTEM  ++A++H + D L   +GF   EHP+VLQ+GGSD   + E+ RIA  FGYD  N+NCGCPSD+V
Sbjct:    9 FSVAPMMDWTDRHCRMFHRALSKRALLWTEMVTADAVIHGDRDRL---IGFSADEHPVVLQLGGSDPHKLAEAARIAESFGYDEVNINCGCPSDRV 101
[Close]
BLAST of mRNA_P-wetherbeei_contig1822.1.1 vs. uniprot
Match: A0A4V3WCS4_9DEIO (tRNA-dihydrouridine(20/20a) synthase n=2 Tax=Deinococcus TaxID=1298 RepID=A0A4V3WCS4_9DEIO)

HSP 1 Score: 121 bits (304), Expect = 2.730e-31
Identity = 54/95 (56.84%), Postives = 72/95 (75.79%), Query Frame = 1 
Query:   10 SVAPMLEYTDRHMRFFMRLLTQRSVMWTEMAVSNALVHAEHDALATELGFDGTEHPIVLQIGGSDVEAVRESCRIARPFGYDGFNLNCGCPSDKV 294
            SVAPM+++TDRH R F R LT+R++++TEM  + A++H + +     LGFDGTEHP+ LQ+GGSD  A+ E  RIA+ FGYD  NLNCGCPSD+V
Sbjct:   13 SVAPMMDWTDRHCRVFHRTLTRRTLLYTEMVTTGAILHGDRER---HLGFDGTEHPVALQLGGSDPAALAECARIAQDFGYDEVNLNCGCPSDRV 104
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BLAST of mRNA_P-wetherbeei_contig1822.1.1 vs. uniprot
Match: UPI0016615537 (tRNA dihydrouridine(20/20a) synthase DusA n=1 Tax=Pseudaminobacter soli TaxID=2831468 RepID=UPI0016615537)

HSP 1 Score: 121 bits (303), Expect = 2.920e-31
Identity = 55/97 (56.70%), Postives = 72/97 (74.23%), Query Frame = 1 
Query:    4 IFSVAPMLEYTDRHMRFFMRLLTQRSVMWTEMAVSNALVHAEHDALATELGFDGTEHPIVLQIGGSDVEAVRESCRIARPFGYDGFNLNCGCPSDKV 294
            I +VAPM+++TDRH RFF R LTQR++++TEM V++A +H + D L   LGFD  EHP+ LQ+GGSD   + E+ RI   FGYD  NLNCGCPSD+V
Sbjct:   12 ILAVAPMMDWTDRHCRFFHRQLTQRALLYTEMIVADAAMHGDRDRL---LGFDPVEHPVALQLGGSDPAKLAEAARIGEAFGYDEINLNCGCPSDRV 105
[Close]
BLAST of mRNA_P-wetherbeei_contig1822.1.1 vs. uniprot
Match: UPI001E2C3CBB (tRNA dihydrouridine(20/20a) synthase DusA n=1 Tax=Aurantimonas sp. VKM B-3413 TaxID=2779401 RepID=UPI001E2C3CBB)

HSP 1 Score: 121 bits (303), Expect = 3.200e-31
Identity = 55/98 (56.12%), Postives = 73/98 (74.49%), Query Frame = 1 
Query:    1 QIFSVAPMLEYTDRHMRFFMRLLTQRSVMWTEMAVSNALVHAEHDALATELGFDGTEHPIVLQIGGSDVEAVRESCRIARPFGYDGFNLNCGCPSDKV 294
            +IF+VAPM+++TDRH RFF R LT+R++++TEM V  A++H + D L   LGFD  EHP+ LQIGGSD E +  +C IA  +GYD  NLN GCPSD+V
Sbjct:   11 RIFAVAPMIDWTDRHCRFFHRQLTRRALLYTEMIVDQAIIHGDADRL---LGFDAAEHPVALQIGGSDPEKLARACAIAGGYGYDEINLNVGCPSDRV 105
[Close]
BLAST of mRNA_P-wetherbeei_contig1822.1.1 vs. uniprot
Match: UPI001E48B015 (tRNA dihydrouridine(20/20a) synthase DusA n=1 Tax=Rhizobium sp. C4 TaxID=1349800 RepID=UPI001E48B015)

HSP 1 Score: 120 bits (302), Expect = 4.260e-31
Identity = 53/98 (54.08%), Postives = 77/98 (78.57%), Query Frame = 1 
Query:    1 QIFSVAPMLEYTDRHMRFFMRLLTQRSVMWTEMAVSNALVHAEHDALATELGFDGTEHPIVLQIGGSDVEAVRESCRIARPFGYDGFNLNCGCPSDKV 294
            +IFS+APML++TDRH R+  RLL++R++++TEM V++A++H + + L   LGFD +EHP+ LQ+GGSD + + E+ RIA  FGYD  NLN GCPSD+V
Sbjct:   14 KIFSIAPMLDWTDRHYRYLARLLSKRALLYTEMVVADAIIHGDRERL---LGFDPSEHPVALQLGGSDPDKLTEAVRIASDFGYDEINLNVGCPSDRV 108
[Close]
BLAST of mRNA_P-wetherbeei_contig1822.1.1 vs. uniprot
Match: A0A436GU44_9HYPH (tRNA dihydrouridine(20/20a) synthase DusA (Fragment) n=1 Tax=Mesorhizobium sp. M7A.F.Ca.CA.004.05.1.1 TaxID=2496694 RepID=A0A436GU44_9HYPH)

HSP 1 Score: 115 bits (288), Expect = 4.350e-31
Identity = 52/95 (54.74%), Postives = 69/95 (72.63%), Query Frame = 1 
Query:   10 SVAPMLEYTDRHMRFFMRLLTQRSVMWTEMAVSNALVHAEHDALATELGFDGTEHPIVLQIGGSDVEAVRESCRIARPFGYDGFNLNCGCPSDKV 294
            SVAPM+++TDRH RFF R LT  ++++TEM V++A++H   + L   LGFD  EHP+ LQ+GGSD E + E+ RI   FGYD  NLN GCPSD+V
Sbjct:   10 SVAPMMDWTDRHCRFFHRQLTSHALLYTEMVVADAVIHGARERL---LGFDAVEHPVALQLGGSDREKLAEAARIGEAFGYDEINLNVGCPSDRV 101
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1822.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQR5_ECTSI7.300e-3459.60FAD binding / catalytic/ tRNA dihydrouridine synth... [more]
A0A526YMD8_9HYPH1.230e-3355.21tRNA dihydrouridine(20/20a) synthase DusA (Fragmen... [more]
A0A659YPC8_9HYPH1.660e-3254.17tRNA dihydrouridine(20/20a) synthase DusA (Fragmen... [more]
A0A3Q8XQZ9_9HYPH3.520e-3257.29tRNA-dihydrouridine(20/20a) synthase n=1 Tax=Georh... [more]
A0A399RS06_9PROT2.040e-3154.17tRNA-dihydrouridine(20/20a) synthase n=3 Tax=Henri... [more]
A0A4V3WCS4_9DEIO2.730e-3156.84tRNA-dihydrouridine(20/20a) synthase n=2 Tax=Deino... [more]
UPI00166155372.920e-3156.70tRNA dihydrouridine(20/20a) synthase DusA n=1 Tax=... [more]
UPI001E2C3CBB3.200e-3156.12tRNA dihydrouridine(20/20a) synthase DusA n=1 Tax=... [more]
UPI001E48B0154.260e-3154.08tRNA dihydrouridine(20/20a) synthase DusA n=1 Tax=... [more]
A0A436GU44_9HYPH4.350e-3154.74tRNA dihydrouridine(20/20a) synthase DusA (Fragmen... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1822contigP-wetherbeei_contig1822:141..754 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FQR5
PFAMsDus
Model size294
Max annot lvl2759|Eukaryota
KEGG koko:K05539,ko:K05542
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.3e-30
EggNOG OGsCOG0042@1|root,KOG2335@2759|Eukaryota
EC1.3.1.88
DescriptiontRNA dihydrouridine synthase activity
Cds size273
COG categoryJ
BRITEko00000,ko01000,ko03016
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186139.794458-CDS-P-wetherbeei_contig1822:140..2451683186139.794458-CDS-P-wetherbeei_contig1822:140..245Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1822 141..245 -
1683186139.8037505-CDS-P-wetherbeei_contig1822:460..6081683186139.8037505-CDS-P-wetherbeei_contig1822:460..608Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1822 461..608 -
1683186139.8111856-CDS-P-wetherbeei_contig1822:713..7331683186139.8111856-CDS-P-wetherbeei_contig1822:713..733Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1822 714..733 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186139.8185787-UTR-P-wetherbeei_contig1822:733..7541683186139.8185787-UTR-P-wetherbeei_contig1822:733..754Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1822 734..754 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1822.1.1prot_P-wetherbeei_contig1822.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1822 141..733 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1822.1.1

>prot_P-wetherbeei_contig1822.1.1 ID=prot_P-wetherbeei_contig1822.1.1|Name=mRNA_P-wetherbeei_contig1822.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=91bp
MLEYTDRHMRFFMRLLTQRSVMWTEMAVSNALVHAEHDALATELGFDGTE
HPIVLQIGGSDVEAVRESCRIARPFGYDGFNLNCGCPSDKV
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mRNA from alignment at P-wetherbeei_contig1822:141..754-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1822.1.1 ID=mRNA_P-wetherbeei_contig1822.1.1|Name=mRNA_P-wetherbeei_contig1822.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=614bp|location=Sequence derived from alignment at P-wetherbeei_contig1822:141..754- (Phaeothamnion wetherbeei SAG_119_79)
CAGATCTTTTCCGTGGCGCCAATGTTGGAATACACTGACCGGTGAGTGAG
GGAACGACGTTTTACGTCTCGTCTTGCTTTTTCTTTGCGTTACTCACACT
TCCCTGTTTCTTACACTTCTTCACCTTTAACCCTACAAAACCCCAGCCAT
ATGCGGTTCTTCATGCGGCTGCTGACGCAACGGAGCGTCATGTGGACAGA
GATGGCGGTTTCGAACGCCCTCGTCCATGCCGAGCACGATGCATTGGCTA
CGGAGCTCGGCTTTGATGGTACGGAGCATCCAATCGTCCTTCAGGTACGC
GCTTCTTGTGTCGCTGCATTCCTTGCGTAAACTTCTACTCCGTTCTCGCG
ACGTACACAGAGTCAAAGTCGCCGACCCTGATCAATGAAGATCATGCTGT
TGTTTCTAGCTGTGAATGCTGATGCTTGCGGGAATGAAAGATCCTGCTGC
TCGTGCTGCCGTTTTTGCCGCTCCCCTGGGTTATGCTTATATTCGGATTC
TGTCCACAGATCGGGGGCTCGGACGTGGAGGCAGTGCGGGAGTCGTGTCG
GATCGCGCGGCCGTTCGGGTACGACGGCTTCAACTTGAATTGCGGCTGCC
CTTCTGACAAGGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1822:141..754-

>mRNA_P-wetherbeei_contig1822.1.1 ID=mRNA_P-wetherbeei_contig1822.1.1|Name=mRNA_P-wetherbeei_contig1822.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=273bp|location=Sequence derived from alignment at P-wetherbeei_contig1822:141..754- (Phaeothamnion wetherbeei SAG_119_79)
ATGTTGGAATACACTGACCGCCATATGCGGTTCTTCATGCGGCTGCTGAC
GCAACGGAGCGTCATGTGGACAGAGATGGCGGTTTCGAACGCCCTCGTCC
ATGCCGAGCACGATGCATTGGCTACGGAGCTCGGCTTTGATGGTACGGAG
CATCCAATCGTCCTTCAGATCGGGGGCTCGGACGTGGAGGCAGTGCGGGA
GTCGTGTCGGATCGCGCGGCCGTTCGGGTACGACGGCTTCAACTTGAATT
GCGGCTGCCCTTCTGACAAGGTG
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