mRNA_P-wetherbeei_contig18212.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18212.3.1
Unique NamemRNA_P-wetherbeei_contig18212.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig18212.3.1 vs. uniprot
Match: A0A348XEU0_9BACT (Uncharacterized protein n=1 Tax=Lentisphaeria bacterium TaxID=2053569 RepID=A0A348XEU0_9BACT)

HSP 1 Score: 151 bits (381), Expect = 1.490e-40
Identity = 79/229 (34.50%), Postives = 132/229 (57.64%), Query Frame = 1
Query:    1 IPGGVGGDLVKMYKLKDQAAHRFPEAVMTTLFDRILGLLGLFIVALAAVGANWDFLSHTKDAHIQYTVSFVASVAVVGATATILAMYHELLFKLSLVYGLAMKIKAITPPKVWRLLGRVVRSISLFRHHLLEVLLALTVSVLIHSLTAGSMWAIGQSVHAPTLQLRDYFLATQIANTISAVPLTPGGLGARDAVLLLFFKAAGEGP-KAGVIPPIYSILVILWSLIGSL 684
            IPG V GDLVKM  ++D A  +   AV+T + DR++GLLGL ++AL +   +WD++  ++D  I+  V ++A+++  G    +   +H  L +L  +  L    + + P  V  + GR+V ++ L+R     +   + +SVL+H   A S  AIGQ +H   +    YFL TQ+AN I+++P+ PGGLG RDAV    F      P K+ ++P + +  +++WS+IG +
Sbjct:   90 IPGSVSGDLVKMVYIRDHAGSKQAAAVLTIMLDRVMGLLGLLLIALVSTAISWDYVQASQDPRIRVAVYWIAALSGCGVVGLLALEFHVALERLPGIRSLINLAQRLLPDSVCAVFGRLVAALDLYRERRSAIAAVIALSVLVHGSLAISYMAIGQGLHIENVGANLYFLTTQVANAIASIPVVPGGLGIRDAVFNAIFTDCNVEPAKSALLPLLGTGAMVIWSVIGGI 318          
BLAST of mRNA_P-wetherbeei_contig18212.3.1 vs. uniprot
Match: A0A3D3JVD4_9BACT (Uncharacterized protein n=1 Tax=Lentisphaeria bacterium TaxID=2053569 RepID=A0A3D3JVD4_9BACT)

HSP 1 Score: 139 bits (349), Expect = 1.030e-35
Identity = 80/237 (33.76%), Postives = 133/237 (56.12%), Query Frame = 1
Query:    1 IPGGVGGDLVKMYKLKDQAAHRFPEAVMTTLFDRILGLLGLFIVALAAVGANWDFLSHTKDAHIQYTVSFVASVAVVGATATILAMYHELLFKLSLVYGLAMKIKAITPPKVWRLLGRVVRSISLFRHHLLEVLLALTVSVLIHSLTAGSMWAIGQSVHAPTLQLRDYFLATQIANTISAVPLTPGGLGARDAVLLLFFKAAG-EGPKAGVIPPIYSILVILWSLIGSLFYFFERQH 708
            IPG + GD VKMY +   A  +   AV+T + DR++GL+GLF+VA  +V A  DF+    D H+Q  V  +   ++ G  + I   + E L +L  V  L      + P K   ++ R+  ++ L+R     V+LAL  SV+ HS  A +++ IG++     + +  YF+  Q+AN ++++PLTP GLG+RD V+  FF   G +G KA ++    S++++ W+ I  +F+   R+H
Sbjct:   98 IPGTITGDFVKMYYIAQHAGEKTSAAVLTIVLDRLVGLMGLFVVASISVLAALDFIRTAPD-HLQVAVGIITGGSICGLASVIAIAFREQLQRLPGVRHLIEFGARVLPDKFTGIIERMSEALDLYRTKPRAVVLALLFSVIGHSAFAMAVYCIGKAFGEEIISVAMYFVTVQVANCVASIPLTPAGLGSRDLVISHFFTELGADGAKAAIVALGLSLVIVTWTAIACVFWILSRRH 333          
BLAST of mRNA_P-wetherbeei_contig18212.3.1 vs. uniprot
Match: A0A401FVD4_9DELT (Uncharacterized protein n=2 Tax=Desulfonema ishimotonii TaxID=45657 RepID=A0A401FVD4_9DELT)

HSP 1 Score: 135 bits (340), Expect = 1.590e-34
Identity = 86/243 (35.39%), Postives = 134/243 (55.14%), Query Frame = 1
Query:    1 IPGGVGGDLVKMYKLKDQAAHRFPEAVMTTLFDRILGLLGLFIVALAAVGANWDFL-SHTKDAHIQYTVSFVASVAVVGAT-ATILAMYHELLFKLSLVYGLAMKIKAITPPKVWRLLGRVVRSISLFRHHLLEVLLALTVSVLIHSLTAGSMWAIGQSVHAPTLQLRDYFLATQIANTISAVPLTPGGLGARDAVLLLFFKAAG-EGPKAGVIPPIYSILVILWSLIGSLFYFFERQHLHVP 720
            +PG V GD++KM  +  +   R  EA MT + DRI G+ GLF V+   V  +  FL S  ++  +    +F+A    +G   A +L  +HE L ++S    L   +    P  V     R+  +I L+      VL AL +SVL+HS  A +++ IG+ +    L +RDYFLATQ+AN ++A+PLTPGG+G RDA + LFF A      + GVIP + +++++ W  IG + +    Q+  +P
Sbjct:   82 LPGTVSGDVMKMAFVTRRTETRKAEAAMTVMLDRIFGVFGLFTVSAVVVMLSLPFLLSLGQEYRLVRISAFLAGSGSLGVIIAFLLLWFHESLLRISYARRLIGFLARRLPEPVVEKFSRLACAIVLYAGKPGIVLSALGLSVLVHSCLALNLFCIGRVIGENILGVRDYFLATQVANAVAAIPLTPGGIGTRDATIALFFNAMNASSDQIGVIPVVMTVILVCWGGIGGIIFTLAGQNTEIP 324          
BLAST of mRNA_P-wetherbeei_contig18212.3.1 vs. uniprot
Match: A0A7V1URC7_9DELT (Flippase-like domain-containing protein n=1 Tax=Desulfobacteraceae bacterium TaxID=2049433 RepID=A0A7V1URC7_9DELT)

HSP 1 Score: 132 bits (332), Expect = 2.370e-33
Identity = 80/237 (33.76%), Postives = 132/237 (55.70%), Query Frame = 1
Query:    1 IPGGVGGDLVKMYKLKDQAAHRFPEAVMTTLFDRILGLLGLFIVALAAVGANWDFLSHTKDAH--IQYTVSFVASVAVVGATATILAMYHELLFKLSLVYGLAMKIKAITPPKVWRLLGRVVRSISLFRHHLLEVLLALTVSVLIHSLTAGSMWAIGQSVHAPTLQLRDYFLATQIANTISAVPLTPGGLGARDAVLLLFFKAAGEG-PKAGVIPPIYSILVILWSLIGSLFYFFER 702
            +PG V GD +K+  L   A  +  +A +T L DR++GL GLFIVA+  +     FL    + +  ++     V + +V+ A A  L +    L     + GL  + K   P  +   L R+  ++ ++      V  A+ +SVL+H+  A +M+ IG +V+   L+L DYFLATQ++N I+ +P+TP G+GARDA + +F  A G    KAGV+P I +++++ W L+G + + F R
Sbjct:   97 LPGAVSGDFLKIAFLSQHAKDKKLKAALTVLLDRVIGLFGLFIVAVVMLLIYMPFLYSLGNTYRPVKIAALTVGTGSVIMALAIALVICGGALMHHPRIGGLIRRGKGRLPDFITSRLERLFEALQMYNRTRGTVFKAVLLSVLVHASLAINMFVIGAAVNENGLRLSDYFLATQVSNAIAGIPVTPAGIGARDATMSMFLIALGAPLEKAGVVPVILTLIILFWGLVGGIVFLFTR 333          
BLAST of mRNA_P-wetherbeei_contig18212.3.1 vs. uniprot
Match: A0A7X7KNW6_9BACT (Flippase-like domain-containing protein n=1 Tax=Lentisphaerae bacterium TaxID=1932692 RepID=A0A7X7KNW6_9BACT)

HSP 1 Score: 132 bits (332), Expect = 1.680e-32
Identity = 82/237 (34.60%), Postives = 127/237 (53.59%), Query Frame = 1
Query:    1 IPGGVGGDLVKMYKLKDQAAHRFPEAVMTTLFDRILGLLGLFIVALAAVGANWDFLSHT-------KDAHIQYTVSFVASVAVVGATATILAMYHELLFKLSLVYGLAMKIKAITPPKVWRLLGRVVRSISLFRHHLLEVLLALTVSVLIHSLTAGSMWAIGQSVHAPTLQLRDYFLATQIANTISAVPLTPGGLGARDAVLLLFFKAAGEGP--KAGVIPPIYSILVILWSLIGSL 684
            IPG V GDLVKM  L   +  R  E V+T L DRI+G+LGLF+VA  +V A    L          + A +   +  +A V  VG      A+         + +G       + PP +  L+GR+V ++ LFR + L +  A+ +++ +H L A ++WA+G+++    L+   Y +   +AN ++A+P+TPGGLG RD    +F  A    P  KAG IP   S+++ LW+LIG+L
Sbjct:  193 IPGAVSGDLVKMGYLSQWSGARRAEGVLTILVDRIIGMLGLFVVASVSVLAALPMLLRLGPECRPLQMAAVTVGLGSLAGVIGVGLVECRAALVRHPWIAALVAWG-----ARVLPPALTALIGRLVSALELFRGNRLAIARAMLMAIAVHGLLAVNLWALGRALGEHALRPSHYVITASVANAVAAIPVTPGGLGTRDKTTAIFLSAFQAAPPEKAGSIPVALSLVIALWALIGAL 424          
BLAST of mRNA_P-wetherbeei_contig18212.3.1 vs. uniprot
Match: A0A1G1BUQ0_9BACT (Uncharacterized protein n=1 Tax=Lentisphaerae bacterium RIFOXYB12_FULL_65_16 TaxID=1798581 RepID=A0A1G1BUQ0_9BACT)

HSP 1 Score: 122 bits (305), Expect = 3.140e-29
Identity = 78/230 (33.91%), Postives = 124/230 (53.91%), Query Frame = 1
Query:    1 IPGGVGGDLVKMYKLKDQAAHRFPEAVMTTLFDRILGLLGLFIVALAAVGANWDFL-SHTKDAHIQYTVSFVASVAVVGATATILAM-YHELLFKLSLVYGLAMKIKAITPPKVWRLLGRVVRSISLFRHHLLEVLLALTVSVLIHSLTAGSMWAIGQSVHAPTLQLRDYFLATQIANTISAVPLTPGGLGARDAVLLLFFKAAGEGP-KAGVIPPIYSILVILWSLIGS 681
            IPG V GDLVKM  +   A  +  EA++T + DR+LGL+GLF++A   +  +   L S   +  +    +FV  +  VG    + A+ + E    L  V G+        P  V R++ R V ++ L+R+  L VL A+ +SVL+H      ++ I ++   P L+  DY L  Q+AN++ A+P+TPGG G RDA    F +A G    K G+IP   +++ + W L+G+
Sbjct:  100 IPGAVSGDLVKMGYVAKYAKSKAAEAILTIMLDRVLGLVGLFVLASVVLVLSLPVLASLPPEFRMLRWAAFVIGLGSVGGILFLAAVEWREKWIGLPGVAGVLEWCGRTAPAAVTRVVLRFVNALELYRNARLTVLKAILLSVLVHFSMGMCLFTIARAEGEPHLRAMDYVLVMQVANSVGAIPITPGGFGMRDATTAKFLEALGAAQEKRGIIPVTLTMVFVAWGLVGA 329          
BLAST of mRNA_P-wetherbeei_contig18212.3.1 vs. uniprot
Match: A0A7X7RCX6_9BACT (Flippase-like domain-containing protein n=3 Tax=unclassified Lentisphaerae TaxID=641407 RepID=A0A7X7RCX6_9BACT)

HSP 1 Score: 108 bits (270), Expect = 4.010e-24
Identity = 72/241 (29.88%), Postives = 119/241 (49.38%), Query Frame = 1
Query:    1 IPGGVG-GDLVKMYKLKDQAAHRFPEAVMTTLFDRILGLLGLFIVALAAVGANWDFLSHTKDAHIQYTVSFVASVAVVGATATILAMYHELL-----FKLSLVYGLAMKIKAITPPKVWRLLGRVVRSISLFRHHLLEVLLALTVSVLIHSLTAGSMWAIGQSVHAPTLQLRDYFLATQIANTISAVPLTPGGLGARDAVLLLFFKAAGEGPKAGV--IPPIYSILVILWSLIGSLFYFFE 699
            IPGG   GD++KM      A H+  EA  T   DR++GL GLF VA+ A  A    L    D   Q  V  +   AV          Y  +L      +  +    A  +    PPK+  L+ +++ ++ L++ +   +L  L  S+ +H++   +++ +G++ H  T+ +  Y LATQI N    +PLTPGG+G R+AV    F A    P   V  IP + +++  +W+L+G+  + F+
Sbjct:  127 IPGGAASGDVIKMAYATRAAPHKRTEAACTVAIDRLIGLAGLFAVAVLATPA---LLWQCPDLPFQQPVIGLGLAAVWAGALAFACAYVAILARAWAMRRKVFQAAAHWLAQRLPPKILGLILKIIAAVDLYKSNQAVLLTTLLHSMFVHAMLGLAVFLVGRAFHEQTMTMLQYMLATQIGNATGVIPLTPGGVGLREAVTAALFTAFKAHPATVVATIPIVNTLIATVWALVGAAAWLFQ 364          
BLAST of mRNA_P-wetherbeei_contig18212.3.1 vs. uniprot
Match: A0A7X8VR10_9BACT (Flippase-like domain-containing protein n=1 Tax=Lentisphaerae bacterium TaxID=1932692 RepID=A0A7X8VR10_9BACT)

HSP 1 Score: 105 bits (261), Expect = 6.080e-23
Identity = 76/234 (32.48%), Postives = 118/234 (50.43%), Query Frame = 1
Query:    1 IPGGVGGDLVKMYKLKDQAAHRFPEAVMTTLFDRILGLLGLFIVALAAVGANWDFL-SHTKDAHIQYTVSFVASVAVVGATATILAMYHELLFKLSLVYGLAMKIKAITPPKVWR-LLGRVVRSISLFRHHLLEVLLALTVSVLIHSLTAGSMWAIGQSVHAPTLQLRDYFLATQIANTISAVPLTPGGLGARDAVLLLFFKAAGEGPK--AGVIPPIYSILVILWSLIGSLFY 690
            IPG V GDL+K+       + R  E  +T L DR+LGL  +FI AL A       L +  ++  +        ++A +G       +     F     +   ++I +   P   R LL R+  +  L+R     +   +T S L+H L A  ++ +G+++    +   +Y LATQ+ANT   +PLTPGG+G RDAV   FFKA    P   AG IP + S L+I+ +L+G+LF+
Sbjct:  111 IPGAVSGDLLKVAYAGRLFSGRKTEIFLTVLLDRVLGLFAMFIAALLASLLYLPRLPAFCREQPLLGLALLAVNLACLGMLLGYFLIVSRRRFSERGFFAFGLRILSFLTPGFLRGLLARLQAAFQLYRQDSRVLSKHITYSTLVHILNALVLFCLGKALGEKVMSFLEYCLATQVANTTGLLPLTPGGIGVRDAVSSAFFKAFAAEPASVAGSIPVMASALMIITALLGALFF 344          
BLAST of mRNA_P-wetherbeei_contig18212.3.1 vs. uniprot
Match: A0A7X7MJ34_9BACT (Flippase-like domain-containing protein n=1 Tax=Oligosphaeraceae bacterium TaxID=2699751 RepID=A0A7X7MJ34_9BACT)

HSP 1 Score: 104 bits (259), Expect = 1.190e-22
Identity = 75/233 (32.19%), Postives = 115/233 (49.36%), Query Frame = 1
Query:    1 IPGGVGGDLVKMYKLKDQAAHRFPEAVMTTLFDRILGLLGLFIVALAAVGANWDFLSHTKDAHIQYTVSFVASVAVVGATATILA--MYH--ELLFKLSLVYGLAMKIKAITPPKVWRLLGRVVRSISLFRHHLLEVLLALTVSVLIHSLTAGSMWAIGQSVHAPTLQLRDYFLATQIANTISAVPLTPGGLGARDAVLLLFFKAAGEGPK--AGVIPPIYSILVILWSLIGS 681
            IPG V GD++K+         R     +T L DRI+GL  +F  AL A  +N D L     +H   T+     V   G  A +LA  +Y   E L  L L+   +  I    P  +  +L R+   + +++     +     +SVLIH       + IG+++    +  R+Y L+TQ+A +   +PLTPGG+G RDAV   FF+A    P   AG IP +YS +++LW +I +
Sbjct:  100 IPGSVSGDVLKIAYAGRCFPGRKTGIALTVLLDRIIGLAAIFFAALLATVSNLDRLRELFTSHP--TLGLAIIVVNAGCIACLLAYALYRCQEHLLALPLLQSGSSAIMRRLPHFLSGILSRLRLGLDMYKKRQTVLGAHALISVLIHVCNGACFYTIGKALGEHAMTAREYLLSTQVAVSTGIIPLTPGGIGTRDAVSAAFFQAFAADPAEVAGSIPVVYSFILLLWGVIAA 330          
BLAST of mRNA_P-wetherbeei_contig18212.3.1 vs. uniprot
Match: A0A7X8XB95_9BACT (Flippase-like domain-containing protein n=1 Tax=Lentisphaerae bacterium TaxID=1932692 RepID=A0A7X8XB95_9BACT)

HSP 1 Score: 103 bits (256), Expect = 2.920e-22
Identity = 76/240 (31.67%), Postives = 118/240 (49.17%), Query Frame = 1
Query:    1 IPGGVGGDLVKMYKLKDQAAHRFPEAVMTTLFDRILGLLGLFIVALAAVGANWDFLSHTKDAHIQYTVSFVASVAVVGATATILAMY-----HELLFKLSLVYGLAMKIKAITPPKVWRLLGRVVRSISLFRHHLLEVLLALTVSVLIHSLTAGSMWAIGQSVHAPTLQLRDYFLATQIANTISAVPLTPGGLGARDAVLLLFFKAAGEGPK--AGVIPPIYSILVILWSLIGSLFYFFE 699
            IPG V GDL+K+         R  E ++T + DRILGL  +F    AA  A   +L    +    + +  +A + V       + +Y      +   K  LV      +    P  +  +L R+  + +L+ +    +   +  S+L+H + A  ++AIG+++    + +  Y L+ QIAN    +PLTPGGLG RDAV   FFKA    P   AG IP +YSI+V+ WSLIG+  + F 
Sbjct:   98 IPGAVSGDLLKIGYAGQYFTGRKTEILLTIMLDRILGLFAMFF---AATLATLLYLPQLPELWRTHRLLGLAVLTVNAGCLVCILVYGLYRKKDFFLKSRLVRTGFSALYRRLPRFLANILERLQAAFALYENQQAILGKHVFYSILVHLINAFCLFAIGKALGEKAMSVTQYTLSMQIANATGLLPLTPGGLGMRDAVSAAFFKAFEANPPEVAGSIPVVYSIIVVSWSLIGAAIFIFS 334          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18212.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A348XEU0_9BACT1.490e-4034.50Uncharacterized protein n=1 Tax=Lentisphaeria bact... [more]
A0A3D3JVD4_9BACT1.030e-3533.76Uncharacterized protein n=1 Tax=Lentisphaeria bact... [more]
A0A401FVD4_9DELT1.590e-3435.39Uncharacterized protein n=2 Tax=Desulfonema ishimo... [more]
A0A7V1URC7_9DELT2.370e-3333.76Flippase-like domain-containing protein n=1 Tax=De... [more]
A0A7X7KNW6_9BACT1.680e-3234.60Flippase-like domain-containing protein n=1 Tax=Le... [more]
A0A1G1BUQ0_9BACT3.140e-2933.91Uncharacterized protein n=1 Tax=Lentisphaerae bact... [more]
A0A7X7RCX6_9BACT4.010e-2429.88Flippase-like domain-containing protein n=3 Tax=un... [more]
A0A7X8VR10_9BACT6.080e-2332.48Flippase-like domain-containing protein n=1 Tax=Le... [more]
A0A7X7MJ34_9BACT1.190e-2232.19Flippase-like domain-containing protein n=1 Tax=Ol... [more]
A0A7X8XB95_9BACT2.920e-2231.67Flippase-like domain-containing protein n=1 Tax=Le... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18212contigP-wetherbeei_contig18212:647..1369 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1210884.HG799462_gene8373
PFAMsLPG_synthase_TM
Model size723
Max annot lvl203682|Planctomycetes
KEGG koko:K07027
KEGG TC4.D.2
Hectar predicted targeting categorysignal anchor
Exons1
Evalue2.17e-11
EggNOG OGsCOG0392@1|root,COG0392@2|Bacteria,2IZNF@203682|Planctomycetes
DescriptionPFAM Uncharacterised protein family (UPF0104)
Cds size723
COG categoryS
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186139.6177094-CDS-P-wetherbeei_contig18212:646..13691683186139.6177094-CDS-P-wetherbeei_contig18212:646..1369Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18212 647..1369 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18212.3.1prot_P-wetherbeei_contig18212.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18212 647..1369 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18212.3.1

>prot_P-wetherbeei_contig18212.3.1 ID=prot_P-wetherbeei_contig18212.3.1|Name=mRNA_P-wetherbeei_contig18212.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=241bp
IPGGVGGDLVKMYKLKDQAAHRFPEAVMTTLFDRILGLLGLFIVALAAVG
ANWDFLSHTKDAHIQYTVSFVASVAVVGATATILAMYHELLFKLSLVYGL
AMKIKAITPPKVWRLLGRVVRSISLFRHHLLEVLLALTVSVLIHSLTAGS
MWAIGQSVHAPTLQLRDYFLATQIANTISAVPLTPGGLGARDAVLLLFFK
AAGEGPKAGVIPPIYSILVILWSLIGSLFYFFERQHLHVPL
back to top

mRNA from alignment at P-wetherbeei_contig18212:647..1369-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18212.3.1 ID=mRNA_P-wetherbeei_contig18212.3.1|Name=mRNA_P-wetherbeei_contig18212.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=723bp|location=Sequence derived from alignment at P-wetherbeei_contig18212:647..1369- (Phaeothamnion wetherbeei SAG_119_79)
ATCCCTGGCGGGGTAGGCGGTGACCTGGTCAAGATGTATAAGCTCAAAGA TCAGGCAGCGCATCGTTTTCCCGAGGCGGTCATGACGACTCTCTTCGACC GTATCCTGGGGTTGCTGGGGCTATTCATCGTCGCCCTCGCGGCCGTTGGG GCCAACTGGGACTTTCTGTCTCATACGAAGGACGCCCATATTCAGTATAC GGTATCCTTCGTCGCCAGCGTGGCCGTCGTGGGCGCTACGGCGACGATTT TAGCGATGTATCACGAGCTGCTCTTCAAGCTCTCTCTGGTTTATGGCCTG GCCATGAAGATCAAGGCCATCACGCCTCCCAAAGTCTGGCGCCTGCTAGG TCGCGTGGTTCGCTCCATCTCTTTGTTTCGCCATCATCTCCTGGAGGTGC TGCTCGCTCTCACCGTTTCCGTGCTCATCCACTCACTGACGGCGGGATCG ATGTGGGCCATCGGCCAGTCCGTGCACGCGCCTACGCTGCAGCTTCGCGA TTACTTCCTGGCCACCCAGATTGCCAACACCATTTCGGCCGTGCCTCTCA CGCCCGGCGGCCTGGGCGCTCGCGACGCGGTCCTGCTGCTTTTCTTCAAG GCGGCCGGTGAGGGCCCCAAGGCGGGCGTCATTCCTCCGATTTACAGTAT CCTGGTCATCCTCTGGAGCTTGATCGGAAGTCTTTTCTATTTCTTCGAGC GCCAGCATCTGCACGTGCCGCTG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig18212:647..1369-

>mRNA_P-wetherbeei_contig18212.3.1 ID=mRNA_P-wetherbeei_contig18212.3.1|Name=mRNA_P-wetherbeei_contig18212.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=723bp|location=Sequence derived from alignment at P-wetherbeei_contig18212:647..1369- (Phaeothamnion wetherbeei SAG_119_79)
ATCCCTGGCGGGGTAGGCGGTGACCTGGTCAAGATGTATAAGCTCAAAGA
TCAGGCAGCGCATCGTTTTCCCGAGGCGGTCATGACGACTCTCTTCGACC
GTATCCTGGGGTTGCTGGGGCTATTCATCGTCGCCCTCGCGGCCGTTGGG
GCCAACTGGGACTTTCTGTCTCATACGAAGGACGCCCATATTCAGTATAC
GGTATCCTTCGTCGCCAGCGTGGCCGTCGTGGGCGCTACGGCGACGATTT
TAGCGATGTATCACGAGCTGCTCTTCAAGCTCTCTCTGGTTTATGGCCTG
GCCATGAAGATCAAGGCCATCACGCCTCCCAAAGTCTGGCGCCTGCTAGG
TCGCGTGGTTCGCTCCATCTCTTTGTTTCGCCATCATCTCCTGGAGGTGC
TGCTCGCTCTCACCGTTTCCGTGCTCATCCACTCACTGACGGCGGGATCG
ATGTGGGCCATCGGCCAGTCCGTGCACGCGCCTACGCTGCAGCTTCGCGA
TTACTTCCTGGCCACCCAGATTGCCAACACCATTTCGGCCGTGCCTCTCA
CGCCCGGCGGCCTGGGCGCTCGCGACGCGGTCCTGCTGCTTTTCTTCAAG
GCGGCCGGTGAGGGCCCCAAGGCGGGCGTCATTCCTCCGATTTACAGTAT
CCTGGTCATCCTCTGGAGCTTGATCGGAAGTCTTTTCTATTTCTTCGAGC
GCCAGCATCTGCACGTGCCGCTG
back to top