mRNA_P-wetherbeei_contig18212.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18212.2.1
Unique NamemRNA_P-wetherbeei_contig18212.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig18212.2.1 vs. uniprot
Match: A0A3D1AXB6_9BACT (BON domain-containing protein n=1 Tax=Bryobacterales bacterium TaxID=2026791 RepID=A0A3D1AXB6_9BACT)

HSP 1 Score: 48.1 bits (113), Expect = 8.460e-5
Identity = 25/66 (37.88%), Postives = 39/66 (59.09%), Query Frame = 1 
Query:  115 DSAKVQAALANIKTDPELAGCDIHCKAENALLVIDGKVNSQGAKDRAETLAKKVQGIKDVANHLVV 312
            D A V +    + TD  + G  +   A++ ++V+ GKV +Q  KD+AE +A+KV G+K V N L V
Sbjct:   32 DDAIVDSVKRKLATDATVKGGALDVDAKDGVVVLKGKVTAQKQKDKAERIARKVNGVKSVDNQLQV 97
[Close]
BLAST of mRNA_P-wetherbeei_contig18212.2.1 vs. uniprot
Match: A0A5C8J2F2_9BURK (BON domain-containing protein n=1 Tax=Ottowia sp. GY511 TaxID=2603274 RepID=A0A5C8J2F2_9BURK)

HSP 1 Score: 49.7 bits (117), Expect = 9.060e-5
Identity = 25/71 (35.21%), Postives = 47/71 (66.20%), Query Frame = 1 
Query:  106 APIDSAKVQAAL-ANIKTDPELAGCDIHCKAENALLVIDGKVNSQGAKDRAETLAKKVQGIKDVANHLVVE 315
            A +D A + A++  ++  DP+L+   I+   ++ ++ ++G   +  AKDRAET+AK V+G+K V+N+L V+
Sbjct:  121 AVMDDAGITASVKTDLAKDPDLSALAINVDTKDGVVTLNGPAPNAAAKDRAETIAKGVKGVKSVSNNLAVK 191
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18212.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A3D1AXB6_9BACT8.460e-537.88BON domain-containing protein n=1 Tax=Bryobacteral... [more]
A0A5C8J2F2_9BURK9.060e-535.21BON domain-containing protein n=1 Tax=Ottowia sp. ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18212contigP-wetherbeei_contig18212:245..598 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1041159.AZUW01000018_gene782
PFAMsBON
Model size354
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue0.00026
EggNOG OGsCOG2823@1|root,COG2823@2|Bacteria,1N1R4@1224|Proteobacteria,2UDII@28211|Alphaproteobacteria
Descriptionperiplasmic or secreted lipoprotein
Cds size342
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186139.5692868-CDS-P-wetherbeei_contig18212:244..5861683186139.5692868-CDS-P-wetherbeei_contig18212:244..586Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18212 245..586 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186139.5801349-UTR-P-wetherbeei_contig18212:586..5981683186139.5801349-UTR-P-wetherbeei_contig18212:586..598Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig18212 587..598 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18212.2.1prot_P-wetherbeei_contig18212.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18212 245..586 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18212.2.1

>prot_P-wetherbeei_contig18212.2.1 ID=prot_P-wetherbeei_contig18212.2.1|Name=mRNA_P-wetherbeei_contig18212.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=114bp
MLKLLARLLVIALLGFTYGCSGPTEPPPTSIAPIDSAKVQAALANIKTDP
ELAGCDIHCKAENALLVIDGKVNSQGAKDRAETLAKKVQGIKDVANHLVV
EQKAPVPGETVAP*
back to top

mRNA from alignment at P-wetherbeei_contig18212:245..598-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18212.2.1 ID=mRNA_P-wetherbeei_contig18212.2.1|Name=mRNA_P-wetherbeei_contig18212.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=354bp|location=Sequence derived from alignment at P-wetherbeei_contig18212:245..598- (Phaeothamnion wetherbeei SAG_119_79)
GAAAGCTGGGCGATGCTGAAACTTCTCGCTCGCCTTCTCGTTATCGCTCT
GCTCGGGTTCACGTATGGCTGCTCCGGGCCCACGGAGCCGCCGCCGACCA
GCATCGCGCCCATCGACTCTGCCAAAGTCCAGGCGGCCCTCGCCAATATC
AAGACCGATCCCGAGCTGGCGGGCTGCGATATTCACTGCAAAGCTGAGAA
TGCGCTGCTGGTGATCGATGGCAAGGTCAATAGCCAGGGCGCCAAAGATC
GCGCCGAGACCCTGGCCAAGAAGGTCCAGGGGATCAAGGACGTCGCCAAT
CATCTTGTCGTCGAACAGAAAGCCCCTGTGCCGGGAGAGACGGTTGCTCC
TTAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig18212:245..598-

>mRNA_P-wetherbeei_contig18212.2.1 ID=mRNA_P-wetherbeei_contig18212.2.1|Name=mRNA_P-wetherbeei_contig18212.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=342bp|location=Sequence derived from alignment at P-wetherbeei_contig18212:245..598- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGAAACTTCTCGCTCGCCTTCTCGTTATCGCTCTGCTCGGGTTCAC
GTATGGCTGCTCCGGGCCCACGGAGCCGCCGCCGACCAGCATCGCGCCCA
TCGACTCTGCCAAAGTCCAGGCGGCCCTCGCCAATATCAAGACCGATCCC
GAGCTGGCGGGCTGCGATATTCACTGCAAAGCTGAGAATGCGCTGCTGGT
GATCGATGGCAAGGTCAATAGCCAGGGCGCCAAAGATCGCGCCGAGACCC
TGGCCAAGAAGGTCCAGGGGATCAAGGACGTCGCCAATCATCTTGTCGTC
GAACAGAAAGCCCCTGTGCCGGGAGAGACGGTTGCTCCTTAG
back to top